New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4557241 =	49 (1.160)	3 (0.070)	3/250	NT	5.7%	coding (236/984 nt)	gntZ	6‑phosphogluconate dehydrogenase
	?	NC_002947	4557288 =	52 (1.270)					coding (189/984 nt)	gntZ	6‑phosphogluconate dehydrogenase

GGCCCCACACGCCGCCGGAAGTCCCGACGTCCAGATAATGCAGGCCGCGCTTGGCCAGTTCTGCAGCGCGGCGCATGTCGTCCTTGTAGAAGGTGTTGCCGCCGTCGATGATCGCATCGCCCGGCTCCAGCATTTCGGCCAGCTGGGCGATGGTCTGCTCGGTGGCGTCACCAGCCGGCAGCATCACCCATACCGCGCGCGGCGCTTTCAGCTTTTGTACCAGTGCACCGAGGTCATGCGCACCCTGGGCGCCTTCGCCCTCCAGGCCGGTGATGGCAT  >  NC_002947/4557098‑4557376                                                                                                                                                |                                                                                                                                        caaggcgcctgatgcgcgccggtcaccgcaccgtggtgcacgaccgcaaccgtgatgccctcaccggcctggagggcgaaggcgcccagggtgcgcctgaccgcggtgcactggtacaaacgctgaacgcgccgcgcgcgggatggggg                                                                                                                                    <  1:153657‑M1/6‑3 (MQ=255)    cccACACGCCGCCGGAAGTCCCGACGTCCAGATAATGCAGGCCGCGCTTGGCCAGTTCTGCAGCGCGGCGCATGTCGTCCTTGTAGAAGGTGTTGCCGCCGTCGATGATCGCATCGCCCGGCTCCAGCATTTCGGCCAGCTGGGCGATg                                                                                                                                 <  1:243499/149‑1 (MQ=255)                 ggAAGTCCCGACGTCCAGATAATGCAGGCCGCGCTTGGCCAGTTCTGCAGCGCGGCGCATGTCGTCCTTGTAGAAGGTGTTGCCGCCGTCGATGATCGCATCGCCCGGCTCCAGCATTTCGGCCAGCTGGGCGATGGTCTGCTCGGTgg                                                                                                                    >  7:202042/1‑149 (MQ=255)                        ccGACGTCCAGATAATGCAGGCCGCGCTTGGCCAGTTCTGCAGCGCGGCGCATGTCGTCCTTGTAGAAGGTGTTGCCGCCGTCGATGATCGCATCGCCCGGCTCCAGCATTTCGGCCAGCTGGGCGATGGTCTGCTCGGTGGCGTCAc                                                                                                              <  3:29446/148‑1 (MQ=255)                        ccGACGTCCAGATAATGCAGGCCGCGCTTGGCCAGTTCTGCAGCGCGGCGCATGTCGTCCTTGTAGAAGGTGTTGCCGCCGTCGATGATCGCATCGCCCGGCTCCAGCATTTCGGCCAGCTGGGCGATGGTCTGCTCGGTGGCGTCAc                                                                                                              >  4:29446/1‑148 (MQ=255)                          gACGTCCAGATAATGCAGGCCGCGCTTGGCCAGTTCTGCAGCGCGGCGCATGTCGTCCTTGTAGAAGGTGTTGCCGCCGTCGATGATCGCATCGCCCGGCTCCAGCATTTCGGCCAGCTGGGCGATGGTCTGCTCGGTGGCGTCACCAg                                                                                                           >  6:2500/1‑149 (MQ=255)                               ccAGATAATGCAGGCCGCGCTTGGCCAGTTCTGCAGCGCGGCGCATGTCGTCCTTGTAGAAGGTGTTGCCGCCGTCGATGATCGCATCGCCCGGCTCCAGCATTTCGGCCAGCTGGGCGATGGTCTGCTCGGTGGCGTCACCAGCCgg                                                                                                       >  4:100813/1‑148 (MQ=255)                                cAGATAATGCAGGCCGCGCTTGGCCAGTTCTGCAGCGCGGCGCATGTCGTCCTTGTAGAAGGTGTTGCCGCCGTCGATGATCGCATCGCCCGGCTCCAGCATTTCGGCCAGCTGGGCGATGGTCTGCTCGGTGGCGTCACCAGCCgg                                                                                                       >  3:137267/1‑147 (MQ=255)                                       cacgaccgcaaccgtgatgccatcaccggcctggagggcgaaggcgcccagggtgcgcatgacctcggtgcactggtacaaaagctgaaagcgccgcgcgcggtaTGGGCGATGGTCTGCTCGGTGGCGTCACCAGCCGGCAGCATCAc                                                                                              <  8:54268‑M1/44‑1 (MQ=255)                                          gaccgcaaccgtgatgccatcaccggcctggagggcgaaggcgcccagggtgcgcatgacctcggtgcactggtacaaaagctgaaagcgccgcgcgcggtaTGGGCGATGGTCTGCTCGGTGGCGTCACCAGCCGGCAGCATCACCCa                                                                                           >  7:54268‑M1/103‑149 (MQ=255)                                            ccgcaaccgtgatgccatcaccggcctggacggcgaaggcgcccagggtgcgcatgacctcggtgcactggtacaaaagctgaaagcgccgcccgcggtaTGGGCGATGGTCTGCTCGGTGGCGTCACCAGCCGGCAGCATCACCCATa                                                                                         >  1:26723‑M1/101‑149 (MQ=255)                                              cgcgCTTGGCCAGTTCTGCAGCGCGGCGCATGTCGTCCTTGTAGAAGGTGTTGCCGCCGTCGATGATCGCATCGCCCGGCTCCAGCATTTCGGCCAGCTGGGCGATGGTCTGCTCGGTGGCGTCCCCAGCCGGCAGCATCACCCATAcc                                                                                       >  6:6591/1‑149 (MQ=255)                                                      gCCAGTTCTGCAGCGCGGCGCATGTCGTCCTTGTAGAAGGTGTTGCCGCCGTCGATGATCGCATCGCCCGGCTCCAGCATTTCGGCCAGCTGGGCGATGGTCTGCTCGGTGGCGTCACCAGCCGGCAGCATCACCCATACCGCGCgcgg                                                                               <  4:137267/149‑1 (MQ=255)                                                       ccAGTTCTGCAGCGCGGCGCATGTCGTCCTTGTAGAAGGTGTTGCCGCCGTCGATGATCGCATCGCCCGGCTCCAGCATTTCGGCCAGCTGGGCGATGGTCTGCTCGGTGGCGTCACCAGCCGGCAGCATCa                                                                                               >  7:133310/1‑132 (MQ=255)                                                       ccAGTTCTGCAGCGCGGCGCATGTCGTCCTTGTAGAAGGTGTTGCCGCCGTCGATGATCGCATCGCCCGGCTCCAGCATTTCGGCCAGCTGGGCGATGGTCTGCTCGGTGGCGTCACCAGCCGGCAGCATCa                                                                                               <  8:133310/132‑1 (MQ=255)                                                        cAGTTCTGCAGCGCGGCGCATGTCGTCCTTGTAGAAGGTGTTGCCGCCGTCGATGATCGCATCGCCCGGCTCCAGCATTTCGGCCAGCTGGGCGATGGTCTGCTCGGTGGCGTCACCAGCCGGCAGCATCACCCATACCGCGCgcggcg                                                                             >  5:122008/1‑149 (MQ=255)                                                             cTGCAGCGCGGCGCATGTCGTCCTTGTAGAAGGTGTTGCCGCCGTCGATGATCGCATCGCCCGGCTCCAGCATTTCGGCCAGCTGGGCGATGGTCTGCTCGGTGGCGTCACCAGCCGGCAGCATCACCCATACCGCGCGCGGCGCttt                                                                         >  5:56408/1‑148 (MQ=255)                                                               gCAGCGCGGCGCATGTCGTCCTTGTAGAAGGTGTTGCCGCCGTCGATGATCGCATCGCCCGGCTCCAGCATTTCGGCCAGCTGGGCGATGGTCTGCTCGGTGGCGTCACCAGCCGGCAGCATCACCCATACCGCGCGCGGCGCTTTCAg                                                                      >  6:57515/1‑149 (MQ=255)                                                                cAGCGCGGCGCATGTCGTCCTTGTAGAAGGTGTTGCCGCCGTCGATGATCGCATCGCCCGGCTCCAGCATTTCGGCCAGCTGGGCGATGGTCTGCTCGGTGGCGTCACCAGCCGGCAGCATCACCCATACCGCGCGCGGCGCt                                                                           <  4:91990/143‑1 (MQ=255)                                                                cAGCGCGGCGCATGTCGTCCTTGTAGAAGGTGTTGCCGCCGTCGATGATCGCATCGCCCGGCTCCAGCATTTCGGCCAGCTGGGCGATGGTCTGCTCGGTGGCGTCACCAGCCGGCAGCATCACCCATACCGCGCGCGGCGCt                                                                           >  3:91990/1‑143 (MQ=255)                                                                    gcggcgCATGTCGTCCTTGTAGAAGGTGTTGCCGCCGTCGATGATCGCATCGCCCGGCTCCAGCATTTCGGCCAGCTGGGCGATGGTCTGCTCGGTGGCGTCGCCAGCCGGCAGCATCACCCATACCGCGCGCGGCGCTTTCAGCtttt                                                                 >  4:83905/1‑149 (MQ=255)                                                                    gcggcgCATGTCGTCCTTGTAGAAGGTGTTGCCGCCGTCGATGATCGCATCGCCCGGCTCCAGCATTTCGGCCAGCTGGGCGATGGTCTGCTCGGTGGCGTCACCAGCCGGCAGCATCACCCATACCGCGCGCGGCGCTTTCAGCtttt                                                                 <  5:208014/149‑1 (MQ=255)                                                                     cggcgCATGTCGTCCTTGTAGAAGGTGTTGCCGCCGTCGACGATCGCATCGCCCGGCTCCAGCATTTCGGCCAGCTGGGCGATGGTCTGCTCGGTGGCGTCCCCAGCCGGCAGCATCACCCATACCGCGCGCGGCGCTTTCAGCTTTTg                                                                >  2:60915/1‑149 (MQ=255)                                                                       gcgcATGTCGTCCTTGTAGAAGGTGTTGCCGCCGTCGATGATCGCATCGCCCGGCTCCAGCATTTCGGCCAGCTGGGCGATGGTCTGCTCGGTGGCGTCACCAGCCGGCAGCATCACCCATACCGCGCGCGGCGCTTTCAGCTTTTGTa                                                              >  7:151063/1‑149 (MQ=255)                                                                          cATGTCGTCCTTGTAGAAGGTGTTGCCGCCGTCGATGATCGCATCGCCCGGCTCCAGCATTTCGGCCAGCTGGGCGATGGTCTGCTCGGTGGCGTCACCAGCCGGCAGCATCACCCATACCGCGCGCGGCGCTTTCAGCTTTTGTACCa                                                           <  3:111582/149‑1 (MQ=255)                                                                          cATGTCGTCCTTGTAGAAGGTGTTGCCGCCGTCGATGATCGCATCGCCCGGCTCCAGCATTTCGGCCAGCTGGGCGATGGTCTGCTCGGTGGCGTCACCAGCCGGCAGCATCACCCATACCGCGCGCGGCGCTTTCAGCTTTTGTACCa                                                           <  8:202042/149‑1 (MQ=255)                                                                          aaTGTCGTCCTTGTAGAAGGTGTTGCCGCCGTCGATGATCGCATCGCCCGGCTCCAGCATTTCGGCCAGCTGGGCGATGGTCTGCTCGGTGGCGTCACCAGCCGGCAGCATCACCCATACCGCGCGCGGCGCTTTCAGCTTTTGTACCa                                                           <  4:242968/148‑1 (MQ=255)                                                                            tGTCGTCCTTGTAGAAGGTGTTGCCGCCGTCGATGATCGCATCGCCCGGCTCCAGCATTTCGGCCAGCTGGGCGATGGTCTGCTCGGTGGCGTCACCAGCCGGCAGCATCACCCATACCGCGCGCGGCGCTTTCAGCTTTTGTACCAGt                                                         <  5:2500/149‑1 (MQ=255)                                                                                   cTTGTAGAAGGTGTTGCCGCCGTCGATGATCGCATCGCCCGGCTCCAGCATTTCGGCCAGCTGGGCGATGGTCTGCTCGGTGGCGTCACCAGCCGGCAGCATCACCCATACCGCGCGCGGCGCTTTCAGCTTTTGTTCCAGTGCAcc                                                    >  5:161459/1‑147 (MQ=255)                                                                                    ttGTAGAAGGTGTTGCCGCCGTCGATGATCGCATCGCCCGGCTCCAGCATTTCGGCCAGCTGGGCGATGGTCTGCTCGGTGGCGTCACCAGCCGGCAGCATCACCCATACCGCGCGCGGCGCTTTCAGc                                                                     <  8:180695/129‑1 (MQ=255)                                                                                    ttGTAGAAGGTGTTGCCGCCGTCGATGATCGCATCGCCCGGCTCCAGCATTTCGGCCAGCTGGGCGATGGTCTGCTCGGTGGCGTCACCAGCCGGCAGCATCACCCATACCGCGCGCGGCGCTTTCAGc                                                                     >  7:180695/1‑129 (MQ=255)                                                                                       tAGAAGGTGTTGCCGCCGTCGATGATCGCATCGCCCGGCTCCAGCATTTCGGCCAGCTGGGCGATGGTCTGCTCGGTGGCGTCACCAGCCGGCAGCATCACCCATACCGCGCGCGGCGCTTTCAGCTTTTGTACCAGTGCACCGAGGt                                               >  6:222426/1‑148 (MQ=255)                                                                                        aGAAGGTGTTGCCGCCGTCGATGATCGCATCGCCCGGCTCCAGCATTTCGGCCAGCTGGGCGATGGTCTGCTCGGTGGCGTCACCAGCCGGCAGCATCACCCATACCGCGCGCGGCGCTTTCAGCTTTTGTACCAGTGCACCGAGGTCa                                             >  4:166644/1‑149 (MQ=255)                                                                                         gAAGGTGTTGCCGCCGTCGATGATCGCATCGCCCGGCTCCAGCATTTCGGCCAGCTGGGCGATGGTCTGCTCGGTGGCGTCACCAGCCGGCAGCATCACCCATACCGCGCGCGGCGCTTTCAGCTTTTGTACCAGTGCACCGAGGTCa                                             <  6:191884/148‑1 (MQ=255)                                                                                             gtgtTGCCGCCGTCGATGATCGCATCGCCCGGCTCCAGCATTTCGGCCAGCTGGGCGATGGTCTGCTCGGTGGCGTCCCCAGCCGGCAGCATCACCCATACCGCGCGCGGCGCTGTCAGCGTTTGTCCCAGTGCACCGAGGTCATgcgc                                        >  2:153657/1‑149 (MQ=255)                                                                                                ttGCAGCCGTCGATGATCGCATCGCCCGGCTCCAGCATTTCGGCCAGCTGGGCGATGGTCTGCTCGGTGGCGTCACCAGCCGGCAGCATCACCCATACCGCGCGCGGCGCTTTCAGCTTTTGTACCAGTGCACCGAGGTCATGCGCAcc                                     <  5:109178/149‑1 (MQ=255)                                                                                                   ccgccgTCGATGATCGCATCGCCCGGCTCCAGCATTTCGGCCAGCTGGGCGATGGTCTGCTCGGTGGCGTCACCAGCCGGCAGCATCACCCATACCGCGCGCGGCGCTTTCAGCTTTTGTACCAGTGCACCGAGGTCATGCGCACCCTg                                  <  6:56408/149‑1 (MQ=255)                                                                                                     gccgTCGATGATCGCATCGCCCGGCTCCAGCATTTCGGCCAGCTGGGCGATGGTCTGCTCGGTGGCGTCACCAGCCGGCAGCATCACCCATACCGCGCGCGGCGCTTTCAGCTTTTGTACCAGTGCACCGAGGTCATGCGCACCCTggg                                <  3:198847/149‑1 (MQ=255)                                                                                                           gatgatCGCATCGCCCGGCTCCAGCATTTCGGCCAGCTGGGCGATGGTCTGCTCGGTGGCGTCACCAGCCGGCAGCATCACCCATACCGCGCGCGGCGCTTTCAGCTTTTGTACCAGTGCACCGAgg                                                >  2:48869/1‑127 (MQ=255)                                                                                                            atgatCGCATCGCCCGGCTCCAGCATTTCGGCCAGCTGGGCGATGGGCTGCTCGGGGGCGTCACCAGCCGGCAGCATCACCCATACCGCGCGCGGCGCTGTCAGCTTTTGTACCAGTGCACCGAGGTCATGCGCACCCTGGGCGCCTTc                         <  1:199548/149‑1 (MQ=255)                                                                                                             tgatCGCATCGCCCGGCTCCAGCATTTCGGCCAGCTGGGCGATGGTCTGCTCGGTGGCGTCACCAGCCGGCAGCATCACCCATACCGCGCGCGGCGCTTTCAGCTTTTGTACCAGTGCACCGAGGTCATGCGCACCCTGGGCGCCTTCg                        <  3:100813/149‑1 (MQ=255)                                                                                                                tcgcatcgcCCGGCTCCAGCATTTCGGCCAGCTGGGCGATGGTCTGCTCGGTGGCGTCACCAGCCGGCAGCATCACCCATACCGCGCGCGGCGCTTTCAGCTTTTGTACCAGTGCACCGAGGTCATGCGCACCCTGGGCGCCTTCGccc                     >  3:24948/1‑149 (MQ=255)                                                                                                                 cgcatcgcCCGGCTCCAGCATTTCGGCCAGCTGGGCGATGGTCTGCTCGGTGGCGTCACCAGCCGGCAGCATCACCCATACCGCGCGCGGCGCTTTCAGCTTTTGTACCAGTGCACCGAGGTCATGCGCACCCTGGGCGCCTTCGCCCt                    >  2:39219/1‑149 (MQ=255)                                                                                                                   catcgcCCGGCTCCAGCATTTCGGCCAGCTGGGCGATGGTCTGCTCGGTGGCGTCACCAGCCGGCAGCATCACCCATACCGCGCGCGGCGCTTTCAGCTTTTGTACCAGTGCACCGAGGTCATGCGCACCCTGGGCGCCTTCGCCCTc                   >  3:157778/1‑148 (MQ=255)                                                                                                                        cccGGCTCCAGCATTTCGGCCAGCTGGGTGATGGTCTGCTCGGTGGCGTCACCAGCCGGCAGCATCACCCATACCGCGCGCGGCGCTTTCAGCTTTTGTACCAGTGCACCGAGGTCATGCGCACCCTGGGCGCCTTCGCCCTc                   <  2:9095/143‑1 (MQ=255)                                                                                                                        cccGGCTCCAGCATTTCGGCCAGCTGGGTGATGGTCTGCTCGGTGGCGTCACCAGCCGGCAGCATCACCCATACCGCGCGCGGCGCTTTCAGCTTTTGTACCAGTGCACCGAGGTCATGCGCACCCTGGGCGCCTTCGCCCTc                   >  1:9095/1‑143 (MQ=255)                                                                                                                        cccGGCTCCAGCATTTCGGCCAGCTGGGCGATGGTCTGCTCGGTGGCGTCACCAGCCGGCAGCATCACCCATACCGCGCGCGGCGCTTTCAGCTTTTGTACCAGTGCACCGAGGTCATGCGCACCCTGGGCGCCTTCGCCCTCCAGGcc             >  8:103434/1‑149 (MQ=255)                                                                                                                         ccGGCTCCAGCATTTCGGCCAGCTGGGCGATGGTCTGCTCGGTGGCGTCCCCAGCCGGCAGCATCACCCATACCGCGCGCGGCGCTTTCAGCTTTTGTACCAGTGCACCGAGGTCATGCGCACCCTGGGCGCCTTCGCCCTCCAGGCCg            >  3:67537/1‑149 (MQ=255)                                                                                                                         ccGGCTCCAGCATTTCGGCCAGCTGGGCGATGGTCTGCTCGGTGGCGTCACCAGCCGGCAGCATCACCCATACCGCGCGCGGCGCTTTCAGCTTTTGTACCAGTGCACCGAGGTCATGCGCACCCTGGGCGCCTTCGCCCTCCAGGCCg            <  8:151063/149‑1 (MQ=255)                                                                                                                              tCCAGCATTTCGGCCAGCTGGGCGATGGTCTGCTCGGTGGCGTCACCAGCCGGTAGCATCACCCATACCGCGCGCGGCGCTTTCAGCTTTTGTACCAGTGCACCGAGGTCATGCGCACCCTGGGCGCCTTCGCCCTCCAGGCCGGTGAt       >  5:136031/1‑149 (MQ=255)                                                                                                                                 aGCATTTCGGCCAGCTGGGCGATGGTCTGCTCGGTGGCGTCACCAGCCGGCAGCATCACCCATACCGCGCGCGGCGCTTTCAGCTTTTGTACCAGTGCACCGAGGTCATGCGCACCCTGGGCGCCTTCGCCCTCCAGGCCGGTGATgg     >  7:65702/1‑148 (MQ=255)                                                                                                                                  gCATTTCGGCCAGCTGGGCGATGGTCTGCTCGGTGGCGTCACCAGCCGGCAGCATCACCCATACCGCGCGCGGCGCTTTCAGCTTTTGTACCAGTGCACCGAGGTCATGCGCACCCTGGGCGCCTTCGCCCTCCAGGCCGGTGATGGCa   >  4:89417/1‑149 (MQ=255)                                                                                                                                    aTTTCGGCCAGCTGGGCGATGGTCTGCTCGGTGGCGTCACCAGCCGGCAGCATCACCCATACCGCGCGCGGCGCTTTCAGCTTTTGTACCAGTGCACCGAGGTCATGCGCACCCTGGGCGCCTTCGCCCTCCAGGCCGGTGATGGCAt  >  2:33882/1‑148 (MQ=255)                                                                                                                                           ccAGCTGGGCGATGGTCTGCTCGGTGGCGTCACCAGCCGGCAGCATCACCCATACCGCGCGCGGCGCTTTCAGCTTTTGTACCAGTGCACCGAGGTCATGCGCACCCTGGGCGCCTTCGCCCTCCAGGCCgg           <  6:208669/132‑1 (MQ=255)                                                                                                                                           ccAGCTGGGCGATGGTCTGCTCGGTGGCGTCACCAGCCGGCAGCATCACCCATACCGCGCGCGGCGCTTTCAGCTTTTGTACCAGTGCACCGAGGTCATGCGCACCCTGGGCGCCTTCGCCCTCCAGGCCgg           >  5:208669/1‑132 (MQ=255)                                                                                                                                                |                                                                                                                                        GGCCCCACACGCCGCCGGAAGTCCCGACGTCCAGATAATGCAGGCCGCGCTTGGCCAGTTCTGCAGCGCGGCGCATGTCGTCCTTGTAGAAGGTGTTGCCGCCGTCGATGATCGCATCGCCCGGCTCCAGCATTTCGGCCAGCTGGGCGATGGTCTGCTCGGTGGCGTCACCAGCCGGCAGCATCACCCATACCGCGCGCGGCGCTTTCAGCTTTTGTACCAGTGCACCGAGGTCATGCGCACCCTGGGCGCCTTCGCCCTCCAGGCCGGTGATGGCAT  >  NC_002947/4557098‑4557376

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.