New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 455910447 (1.110)5 (0.130) 5/244 NT 9.9% coding (60/963 nt) PP_4046 hypothetical protein
?NC_002947 = 4559118 47 (1.180)coding (46/963 nt) PP_4046 hypothetical protein

CACCCGAGTAGCGCTGGATGGCCAGCTCCAGTGCCATGTGCGCCCAGTCGAGACTAAGGCCACGGTAATGATGCTTGCGCTCGGCGGACTCGGCCAGCAATGCCTGTGTATCAGGGTCGGCAAACTCCTGCTCTTTTTCACGGGTCGAGGCGTGGTAATGCTGCTCGACCATCCACGGGTCGCGCTTGATGCTGTCGAACGGGTCCATAGGCCCTCCCGCACGCTATAAGCCTTTCACCAAGCGCCAAACCACGGAGCGCCCATTTTCGCTCGGCATCTCTACGCCTTGCATGAAT  >  NC_002947/4558956‑4559251
                                                                                                                                                    |                                                                                                                                                   
cACCCGAGTAGCGCTGGATGGCCAGCTCCAGTGCCATGTGCGCCCAGTCGAGACTAAGGCCACGGTAATGATGCTTGCGCTCGGCGGACTCGGCCAGCAATGCCTGTGTATCAGGGTCGGCAAACTCCTGCTCTTTTTCACGGGTCGAG                                                                                                                                                     <  6:95260‑M1/149‑1 (MQ=255)
 aCCCGAGTAGCGCTGGATGGCCAGCTCCAGTGCCATGTGCGCCCAGTCGAGACTAAGGCCACGGTAATGATGCTTGCGCTCGGCGGACTCGGCCAGCAATGCCTGTGTATCAGGGTCGGCAAACTCCTGCTCTTTTTCACGGGTCGAgg                                                                                                                                                    <  7:221720/149‑1 (MQ=255)
          gcgcTGGATGGCCAGCTCCAGTGCCATGTGCGCCCAGTCGAGACTAAGGCCACGGTAATGATGCTTGCGCTCGGCGGACTCGGCCAGCAATGCCTGTGTATCAGGGTCGGCAAACTCCTGCTCTTTTTCACGGGTCGAGGCGTGGTaa                                                                                                                                            <  8:140858/148‑1 (MQ=255)
              tGGATGGCCAGCTCCAGTGCCATGTGCGCCCAGTCGAGACTAAGGCCACGGTAATGATGCTTGCGCTCGGCGGACTCGGCCAGCAATGCCTGTGTATCAGGGTCGGCAAACTCCTGCTCTTTTTCACGGGTCGAGGCGTGGTAAtgctg                                                                                                                                       >  1:16276/1‑149 (MQ=255)
                gATGGCCAGCTCCAGTGCCATGTGCGCCCAGTCGAGACTAAGGCCACGGTAATGATGCTTGCGCTCGGCGGACTCGGCCAGCAATGCCTGTGTATCAGGGTCGGCAAACTCCTGCTCTTTTTCACGGGTCGAGGCGTGGTAATGCTGct                                                                                                                                     <  3:35691‑M2/149‑3 (MQ=255)
                    gCCAGCTCCAGTGCCATGTGCGCCCAGTCGAGACTAAGGCCACGGTAATGATGCTTGCGCTCGGCGGACTCGGCCAGCAATGCCTGTGTATCAGGGTCGGCAAACTCCTGCTCTTTTTCACGGGTCGAGcagcattaccacgcctcgac                                                                                                                                 <  4:129817‑M1/149‑21 (MQ=255)
                        gCTCCAGTGCCATGTGCGCCCAGTCGAGACTAAGGCCACGGTAATGATGCTTGCGCTCGGCGGACTCGGCCAGCAATGCCTGTGTATCAGGGTCGGCAAACTCCTGCTCTTTTTCACGGGTCGAGGCGTGGTAATGCTGCTCGACCATc                                                                                                                             <  3:209886/149‑1 (MQ=255)
                            cAGTGCCATGTGCGCCCAGTCGAGACTAAGGCCACGGTAATGATGCTTGCGCTCGGCGGACTCGGCCAGCAATGCCTGTGTATCAGGGTCGGCAAACTCCTGCTCTTTTTCACGGGTCGAGGCGTGGTAATGCTGCTCGACCATCCAc                                                                                                                          <  4:35691/148‑1 (MQ=255)
                            cAGTGCCATGTGCGCCCAGTCGAGACTAAGGCCACGGTAATGATGCTTGCGCTCGGCGGACTCGGCCAGCAATGCCTGTGTATCAGGGTCGGCAAACTCCTGCTCTTTTTCACGGGTCGAGGCGTGGTAATGCTGCTCGACCATCCAc                                                                                                                          <  8:46643/148‑1 (MQ=255)
                              gTGCCATGTGCGCCCAGTCGAGACTAAGGCCACGGTAATGATGCTTGCGCTCGGCGGACTCGGCCAGCAATGCCTGTGTATCAGGGTCGGCAAACTCCTGCTCTTTTTCACGGGTCGAGGCGTGGTAATGCTGCTCGACCATCCACggg                                                                                                                       >  1:255998/1‑149 (MQ=255)
                              gTGCCATGTGCGCCCAGTCGAGACTAAGGCCACGGTAATGATGCTTGCGCTCGGCGGACTCGGCCAGCAATGCCTGTGTATCAGGGTCGGCAAACTCCTGCTCTTTTTCACGGGTCGAGGCGTGGTAATGCTGCTCGACCATCCACgg                                                                                                                        <  5:272480/148‑1 (MQ=255)
                              gTGCCATGTGCGCCCAGTCGAGACTAAGGCCACGGTAATGATGCTTGCGCTCGGCGGACTCGGCCAGCAATGCCTGTGTATCAGGGTCGGCAAACTCCTGCTCTTTTTCACGGGTCGAGGCGTGGTAATGCTGCTCGACCATCCACgg                                                                                                                        >  6:272480/1‑148 (MQ=255)
                                     gtgCGCCCAGTCGAGACTAAGGCCACGGTAATGATGCTTGCGCTCGGCGGACTCGGCCAGCAATGCCTGTGTATCAGGGTCGGCAAACTCCTGCTCTTTTTCACGGGTCGAGGCGTGGTAATGCTGCTCGACCATCCACGGGTCGCGCt                                                                                                                >  1:248590/1‑149 (MQ=255)
                                         gcCCAGTCGAGACTAAGGCCACGGTAATGATGCTTGCGCTCGGCGGACTCGGCCAGCAATGCCTGTGTATCAGGGTCGGCAAACTCCTGCTCTTTTTCACGGGTCGAGcagcattaccacgcctcgacccgtgaaaaa                                                                                                                       <  2:120689‑M1/138‑31 (MQ=255)
                                         gcCCAGTCGAGACTAAGGCCACGGTAATGATGCTTGCGCTCGGCGGACTCGGCCAGCAATGCCTGTGTATCAGGGTCGGCAAACTCCTGCTCTTTTTCACGGGTCGAGcagcattaccacgcctcgacccgtgaaaaa                                                                                                                       >  1:120689‑M1/1‑108 (MQ=255)
                                                cGAGACTAAGGCCACGGTAATGATGCTTGCGCTCGGCGGACTCGGCCAGCAATGCCTGTGTATCAGGGTCGGCAAACTCCTGCTCTTTTTCACGGGTCGAGGCGTGGTAATGCTGCTCGACCATCCACGGGTCGCGCTTGATGCTGTc                                                                                                      >  8:20594/1‑148 (MQ=255)
                                                 gagaCTAAGGCCACGGTAATGATGCTTGCGCTCGGCGGACTCGGCCAGCAATGCCTGTGTATCAGGGTCGGCAAACTCCTGCTCTTTTTCACGGGTCGAGGCGTGGTAATGCTGCTCGACCATCCACGGGTCGCGCTTGATGCTGTCg                                                                                                     >  6:191801/1‑148 (MQ=255)
                                                 gagaCTAAGGCCACGGTAATGATGCTTGCGCTCGGCGGACTCGGCCAGCAATGCCTGTGTATCAGGGTCGGCAAACTCCTGCTCTTTTTCACGGGTCGAGGCGTGGTAATGCTGCTCGACCATCCACGGGTCGCGCTTGATGCTGTCg                                                                                                     >  2:84124/1‑148 (MQ=255)
                                                        aGGCCACGGTAATGATGCTTGCGCTCGGCGGACTCGGCCAGCAATGCCTGTGTATCAGGGTCGGCAAACTCCTGCTCTTTTTCACGGGTCGAGGCGTGGTAATGCTGCTCGACCATCCACGGGTCGCGCTTGATGCTGTCGAACGGGTc                                                                                             <  1:238052/149‑1 (MQ=255)
                                                          gCCACGGGAATGATGCTTGCGCTCGGCGGACTCGGCCAGCAATGCCTGGGTATCAGGGTCGGCCAACTCCTTCTCTTTTTCACGGGTCGAGGCGTGTTAATGCTGCTCGACCATCCACGGGTCGCGCTTGATGCGGTCGAACGGGTCCa                                                                                           >  5:66183/1‑149 (MQ=255)
                                                             aCGGTAATGATGCTTGCGCTCGGCGGACTCGGCCAGCAATGCCTGTGTATCAGGGTCGGCAAACTCCTGCTCTTTTTCACGGGTCGAGGCGTGGTAATGCTGCTCGACCATCCACGGGTCGCGCTTGATGCTGTCGAACGGGTCCATAg                                                                                        <  5:191801/149‑1 (MQ=255)
                                                                     gatgCTTGCGCTCGGCGGACTCGGCCAGCAATGCCTGTGTATCAGGGTCGGCAAACTCCTGCTCTTTTTCACGGGTCGAGGCGTGGTAATGCTGCTCGACCATCCACGGGTCGCGCTTGAt                                                                                                            >  6:255146/1‑121 (MQ=255)
                                                                     gatgCTTGCGCTCGGCGGACTCGGCCAGCAATGCCTGTGTATCAGGGTCGGCAAACTCCTGCTCTTTTTCACGGGTCGAGGCGTGGTAATGCTGCTCGACCATCCACGGGTCGCGCTTGAt                                                                                                            <  5:255146/121‑1 (MQ=255)
                                                                          ttGCGCTCGGCGGACTCGGCCAGCAATGCCTGTGTATCAGGGTCGGCAAACTCCTGCTCTTTTTCACGGGTCGAGCAGCATTACCACGCctcgacccgtgaaaaagagcaggagtt                                                                                                            >  1:118945‑M2/1‑89 (MQ=255)
                                                                          ttGCGCTCGGCGGACTCGGCCAGCAATGCCTGTGTATCAGGGTCGGCAAACTCCTGCTCTTTTTCACGGGTCGAGCAGCATTACCACGCctcgacccgtgaaaaagagcaggagtt                                                                                                            <  2:118945‑M2/116‑28 (MQ=255)
                                                                            gcgcTCGGCGGACGCGGCCAGCAATGCCTGTGTATCAGGGTCGGCAAACTCCTGCTCTTTTTCACGGGTCGAGGCGTGGTAATGCTGCTCGACCATCCACGGGTCGCGCTTGATGCTGTCGAACGGGTCCATAGGCCCTCCCGCACg                                                                           <  5:273686/147‑1 (MQ=255)
                                                                                            gCCAGCAATGCCTGTGTATCAGGGTCGGCAAACTCCTGCTCTTTTTCACGGGTCGCGGCGTGGTAATGCTGCTCGACCATCCACGGGTCGCGCTTGATGCTGTCGAACGGGTCCATAGGCCCTCCCGCACGCTATAAGCCTTTCAcc                                                           >  4:116071/1‑147 (MQ=255)
                                                                                                gCAATGCCTGTGTATCAGGGTCGGCAAACTCCTGCTCTTTTTCACGGGTCGAGGCGTGGTAATGCTGCTCGACCATCCACGGGTCGCGCTTGATGCTGTCGAACGGGTCCATAGGCCCTCCCGCACGCTATAAGCCTTTCACCAAgcgc                                                     <  2:16276/149‑1 (MQ=255)
                                                                                                         gtgtATCAGGGTCGGCAAACTCCTGCTCTTTTTCACGGGTCGAGGCGTGGTAATGCTGCTCGACCATCCACGGGTCGCGCTTGATGCTGTCGAACGGGTCCATAGGCCCTCCCGCACGCTATAAGCCTTTCa                                                             >  6:160565/1‑132 (MQ=255)
                                                                                                         gtgtATCAGGGTCGGCAAACTCCTGCTCTTTTTCACGGGTCGAGGCGTGGTAATGCTGCTCGACCATCCACGGGTCGCGCTTGATGCTGTCGAACGGGTCCATAGGCCCTCCCGCACGCTATAAGCCTTTCa                                                             <  5:160565/132‑1 (MQ=255)
                                                                                                            tATCAGGGTCGGCAAACTCCTGCTCTTTTTCACGGGTCGAGGCGTGGTAATGCTGCTCGACCATCCACGGGTCGCGCTTGATGCTGTCGAACGGGTCCATAGGCCCTCCCGCACGCTATAAGCCTTTCACCAAGCGCCAAACCAc                                             >  4:220336/1‑145 (MQ=255)
                                                                                                            tATCAGGGTCGGCAAACTCCTGCTCTTTTTCACGGGTCGAGGCGTGGTAATGCTGCTCGACCATCCACGGGTCGCGCTTGATGCTGTCGAACGGGTCCATAGGCCCTCCCGCACGCTATAAGCCTTTCACCAAGCGCCAAACCAc                                             <  3:220336/145‑1 (MQ=255)
                                                                                                             aTCAGGGTCGGCAAACTCCTGCTCTTTTTCACGGGTCGAGGCGTGGTAATGCTGCTCGACCATCCACGGGTCGCGCTTGATGCTGTCGAACGGGTCCATAGGCCCTCCCGCACGCTATAAGCCTTTCACCAAGCGCCAAACCACGGAgc                                        >  7:58765/1‑149 (MQ=255)
                                                                                                                aGGGTCGGCAAACTCCTGCTCTTTTTCACGGGTCGAGGCGTGGTAATGCTGCTCGACCATCCACGGGTCGCGCTTGATGCTGTCGAACGGGTCCATAGGCCCTCCCGCACGCTATAAGCCTTTCACCAAGCGCCAAACCACGGAGCGcc                                     >  8:182563/1‑149 (MQ=255)
                                                                                                                  ggTCGGCAAACTCCTGCTCTTTTTCACGGGTCGAGGCGTGGTAATGCTGCTCGACCATCCACGGGTCGCGCTTGATGCTGTCGAACGGGTCCATAGGCCCTCCCGCACGCTATAAGCCTTTCACCAAGCGCCAAACCACGGAGCGCCCa                                   >  8:92890/1‑149 (MQ=255)
                                                                                                                      ggCAAACTCCTGCTCTTTTTCACGGGTCGAGGCGTGGTAATGCTGCTCGACCATCCACGGGTCGCGCTTGATGCTGTCGAACGGGTCCATAGGCCCTCCCGCACGCTATAAGCCTTTCACCAAGCGCCAAACCCCGGAGCGCCCAtttt                               >  1:250561/1‑149 (MQ=255)
                                                                                                                       tcAAACTCCTGCGCTTTTTCCCGGGTCGCGGCGTGGTACTGCTGCTCGACCAGCCACGGGGCGCGCTTGAGGCTGTCGAACGGGTCCATAGGCCCTCCCGCACGCTATAAGCCTTTCACCAAGCGCCAAACCACGGAGCGCCCATTTTc                              <  6:66183/148‑1 (MQ=255)
                                                                                                                        cAAACTCCTGCTCTTTTTCACGGGTCGAGGCGTGGTAATGCTGCTCGACCATCCACGGGTCGCGCTTGATGCTGTCGAACGGGTCCATAGGCCCTCCCGCACGCTATAAGCCTTTCACCAAGCGCCAAACCACGGAGCGCCCATTTTc                              <  4:171187/148‑1 (MQ=255)
                                                                                                                        cAAACTCCTGCTCTTTTTCACGGGTCGAGGCGTGGTAATGCTGCTCGACCATCCACGGGTCGCGCTTGATGCTGTCGAACGGGTCCATAGGCCCTCCCGCACGCTATAAGCCTTTCACCAAGCGCCAAACCACGGAGCGCCCATTTTc                              >  3:171187/1‑148 (MQ=255)
                                                                                                                        cAAACTCCTGCTCTTTTTCACGGGTCGAGGCGTGGTAATGCTGCTCGACCATCCACGGGTCGCGCTTGATGCTGTCGAACGGGTCCATAGGCCCTCCCGCACGCTATAAGCCTTTCACCAAGCGCCAAACCACGGAGCGCCCATTTTCg                             <  7:20594/149‑1 (MQ=255)
                                                                                                                         aaaCTCCTGCTCTTTTTCACGGGTCGAGGCGTGGTAATGCTGCTCGACCATCCACGGGTCGCGCTTGATGCTGTCGAACGGGTCCATAGGCCCTCCCGCACGCTATAAGCCTTTc                                                              <  3:229665/115‑1 (MQ=255)
                                                                                                                          aaCTCCTGCTCTTTTTCACGGGTCGAGgcgtggtaatgctgctcgacccgtgaaaaagagcaggagtttgccgaccctgatacacaggcattgctggccgagtccgccgagcgcaa                                                            >  1:118945‑M1/1‑27 (MQ=255)
                                                                                                                          aaCTCCTGCTCTTTTTCACGGGTCGAGgcgtggtaatgctgctcgacccgtgaaaaagagcaggagtttgccgaccctgatacacaggcattgctggccgagtccgccgagcgcaa                                                            <  2:118945‑M1/116‑90 (MQ=255)
                                                                                                                          aaCTCCTGCTCTTTTTCACGGGTCGAGGCGTGGTAATGCTGCTCGACCATCCACGGGTCGCGCTTGATGCTGTCGAACGGGTCCATAGGCCCTCCCGCACGCTATAAGCCTTTCACCAAGCGCCAAACCACGGAGCGCCCATTTTCGCt                           <  8:58765/149‑1 (MQ=255)
                                                                                                                             tCCTGCTCTTTTTCACGGGTCGAGGCGTGGTAATGCTGCTCGACCATCCACGGGTCTCGCTTGATGCTGTCGAACGGGTCCATAGGCCCTCACTCACGCTATAAGCCTTTCACCAAGCGACAAACCAAGGAGCGCCCATTTTCGCTCg                         >  7:136918/1‑148 (MQ=255)
                                                                                                                               cTGCTCTTTTTCACGGGTCGAGGCGTGGTAATGCTGCTCGACCATCCACGGGTCGCGCTTGATGCTGTCGAACGGGTCCATAGGCCCTCCCGCACGCTATAAGCCTTTCACCAAGCGCCAAACCACGGAGCGCCCATTTTCGCTCGGc                       <  2:248590/148‑1 (MQ=255)
                                                                                                                               cTGCTCTTTTTCACGGGTCGAGGCGTGGTAATGCTGCTCGACCATCCACGGGTCGCGCTTGATGCTGTCGAACGGGTCCATAGGCCCTCCCGCACGCTATAAGCCTTGCACCAAGCGCCAAACCACGGAGCGCCCATTTTCGCTCGGCa                      >  5:232147/1‑149 (MQ=255)
                                                                                                                                 gCTCTTTTTCACGGGTCGAGGCGTGGTAATGCTGCTCGACCATCCACGGGTCGCGCTTGATGCTGTCGAACGGGTCCATAGGCCCTCCCGCACGCTATAAGCCTTTCACCAAGCGCCAAACCACGGAGCGCCCATTTTCGCTCGGCAt                     >  2:44118/1‑148 (MQ=255)
                                                                                                                                   tctTTTTCACGGGTCGAGGCGTGGTAATGCTGCTCGACCATCCACGGGTCGCGCTTGATGCTGTCGAACGGGTCCATAGGCCCTCCCGCACGCTATAAGCCTTTCACCAAGCGCCAAACCACGGAGCGCCCATTTTCGCTCGGCAtctc                  >  1:173404/1‑149 (MQ=255)
                                                                                                                                     tttttCACGGGTCGAGGCGTGGTAATGCTGctcgacccgtgaaaaagagcaggagtttgccgaccctgatacacaggcattgctggccgagtccgccgagcgcaagcatcattaccgtggccttagtctcgactgggc                           <  2:120689‑M2/138‑109 (MQ=255)
                                                                                                                                     tttttCACGGGTCGAGGCGTGGTAATGCTGctcgacccgtgaaaaagagcaggagtttgccgaccctgatacacaggcattgctggccgagtccgccgagcgcaagcatcattaccgtggccttagtctcgactgggc                           >  1:120689‑M2/1‑30 (MQ=255)
                                                                                                                                     tttttCACGGGTCGAGGCGTGGTAATGCTGCTCGACCATCCACGGGTCGCGCTTGATGCTGTCGAACGGGTCCATAGGCCCTCCCGCACGCTATAAGCCTTTCACCaa                                                         >  7:159630/1‑108 (MQ=255)
                                                                                                                                     tttttCACGGGTCGAGGCGTGGTAATGCTGCTCGACCATCCACGGGTCGCGCTTGATGCTGTCGAACGGGTCCATAGGCCCTCCCGCACGCTATAAGCCTTTCACCaa                                                         <  8:159630/108‑1 (MQ=255)
                                                                                                                                     tttttCACGGGTCGAGGCGTGGTAATGCTGCTCGACCATCCACGGGTCGCGCTTGATGCTGTCGAACGGGTCCATAGGCCCTCCCGCACGCTATAAGCCTTTCACCAAgc                                                       <  4:229294/110‑1 (MQ=255)
                                                                                                                                     tttttCACGGGTCGAGGCGTGGTAATGCTGCTCGACCATCCACGGGTCGCGCTTGATGCTGTCGAACGGGTCCATAGGCCCTCCCGCACGCTATAAGCCTTTCACCAAgc                                                       >  3:229294/1‑110 (MQ=255)
                                                                                                                                      ttttCACGGGTCGAGGCGTGGTAATGCTGCTCGACCATCCACGGGTCGCGCTTGATGCTGTCGAACGGGTCCATAGGCCCTCCCGCACGCTATAAGCCTTTCACCAAg                                                        >  6:109868/1‑108 (MQ=255)
                                                                                                                                      ttttCACGGGTCGAGGCGTGGTAATGCTGCTCGACCATCCACGGGTCGCGCTTGATGCTGTCGAACGGGTCCATAGGCCCTCCCGCACGCTATAAGCCTTTCACCAAg                                                        <  5:109868/108‑1 (MQ=255)
                                                                                                                                       tttCACGGGTCGAGGCGTGGTAATGCTGCTCGACCATCCACGGGTCGCGCTTGATGCTGTCGAACGGGTCCATAGGCCCTCCCGCACGCTATAAGCCTTTCACCAAGCGCCAAACCACGGAGCGCCCATTTTCGCTCGGCATATCTACg              >  1:64673/1‑149 (MQ=255)
                                                                                                                                           aCGGGTCGAGGCGTGGTAATGCTGCTCGACCATCCACGGGTCGCGCTTGATGCTGTCGAACGGGTCCATAGGCCCTCCCGCACGCTATAGGCCTTTCACCAAGCGCCAAACCACGGAGCGCCCATTTTCGCTCGGCATGTCTACGCCtt          >  7:75033/1‑149 (MQ=255)
                                                                                                                                               gTCGAGGCGTGGTAATGCTGctcgacccgtgaaaaagagcaggagtttgccgaccctgatacacaggcattgctggccgagtccgccgagcgcaagcatcattaccgtggccttagtctcgactgggcgcacatggcactggagctggc      <  4:129817‑M2/149‑130 (MQ=255)
                                                                                                                                                   agcagcattaccacgcctcgacccgtgaaaaagagcaggagtttgccgaccctgatacacaggcattgctggccgagtccgccgagcgcaagcatcattaccgtggccttagtctcgactgggcgcacatggcactggagctggccatc  <  3:35691‑M1/149‑148 (MQ=255)
                                                                                                                                                    |                                                                                                                                                   
CACCCGAGTAGCGCTGGATGGCCAGCTCCAGTGCCATGTGCGCCCAGTCGAGACTAAGGCCACGGTAATGATGCTTGCGCTCGGCGGACTCGGCCAGCAATGCCTGTGTATCAGGGTCGGCAAACTCCTGCTCTTTTTCACGGGTCGAGGCGTGGTAATGCTGCTCGACCATCCACGGGTCGCGCTTGATGCTGTCGAACGGGTCCATAGGCCCTCCCGCACGCTATAAGCCTTTCACCAAGCGCCAAACCACGGAGCGCCCATTTTCGCTCGGCATCTCTACGCCTTGCATGAAT  >  NC_002947/4558956‑4559251

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.