New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4705453	33 (0.780)	3 (0.070)	3/246	NT	6.9%	coding (1039/1053 nt)	PP_4162	membrane protein
	?	NC_002947	= 4705500	49 (1.220)					coding (992/1053 nt)	PP_4162	membrane protein

GGGGGGTGGGGGTGGGTATAAAGAATGCGTAAAAATCAGCGTTGTGGTCTGCCTGTAACGGCCTCTTCGCGGGCTTGCCCGCGAAAGGGCCGTTACAGGCTTATTGTTGTGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAGGCAAGCAAGCCGCCGAACACGCCCAGCAGCACGATCACCAGCGGCAGGTTGCCGCCA  >  NC_002947/4705339‑4705601                                                                                                                    |                                                                                                                                                     ggggggTGGGGGTGGGTATAAAGAATGCGTAAAAATCAGCGTTGTGGTCTGCCTGTAACGGCCTCTTCGCGGGCTTGCCCGCGAAAGGGCCGTTACAGGCTTATTGTTGTGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCcagcag                                                                                                                     >  7:80645/1‑148 (MQ=255)                       gAATGCGTAAAAATCAGCGTTGTGGTCTGCCTGTAACGGCCTCTTCGCGGGCTTGCCCGCGAAAGGGCCGTTACAGGCTTATTGTTGTGGC‑GGtaggctacagcctgctgctggactggagccgtaacgcggcgcagcagccgccacaa                                                                                              <  8:67858‑M1/149‑57 (MQ=255)                               aaaaaTCAGCGTTGTGGTCTGCCTGTAACGGCCTCTTCGCGGGCTTGCCCGCGAAAGGGCCGTTACAGGCTTATTGTTGTGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGc                                                                                      >  7:198323/1‑149 (MQ=255)                                 aaaTCAGCGTTGTGGTCTGCCTGTAACGGCCTCTTCGCGGGCTTGCCCGCGAAAGGGCCGTTACAGGCTTATTGTTGTGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGccc                                                                                    >  3:144377/1‑149 (MQ=255)                                    tCAGCGTTGTGGTCTGCCTGTAACCGCCTCTTCGCGGGCTAGCCCGCGAAAGGGCCGTTACAGGCTTATTGTTGTGGC‑GGCTGCTTCGCCGCGTTACGGCTCCAGTCCCGCAGCATGCTGTAGCCTCCCGCCAGCCAGGTCGGCCCGAt                                                                                 >  5:7277/1‑149 (MQ=255)                                             tgGTCTGCCTGTAACGGCCTCTTCGCGGGCTTGCCCGCGAAAGGGCCGTTACAGGCTTATTGTTGTGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGcc                                                                        <  8:80645/149‑1 (MQ=255)                                                tCTGCCTGTAACGGCCTCTTCGCGGGCTTGCCCGCGAAAGGGCCGTTACAGGCTTATTGTTGTGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGt                                                                                                             >  8:177979/1‑109 (MQ=255)                                                tCTGCCTGTAACGGCCTCTTCGCGGGCTTGCCCGCGAAAGGGCCGTTACAGGCTTATTGTTGTGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGt                                                                                                             <  7:177979/109‑1 (MQ=255)                                                tCTGCCTGTAACGGCCTCTTCGCGGGCTTGCCCGCGAAAGGGCCGTTACAGGCTTATTGTTGTGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAAt                                                                     >  1:15338/1‑149 (MQ=255)                                                       gTAACGGCCCTTTCGCGGGCAAGCCCGCGAAGAGGCCGTTACAGGCTTATTGTTGTGGC‑GGCTGCTGAGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCAACCGCCAGCAAGGTCGGCCCGATGAAAAGGACAATGAAGcc                                                               >  6:176798/1‑148 (MQ=37)                                                          aCGGCCTCTTCGCGGGCTTGCCCGCGAAAGGGCCGTTACAGGCTTATTGTTGTGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGaaaa                                                                            <  8:120640/132‑1 (MQ=255)                                                          aCGGCCTCTTCGCGGGCTTGCCCGCGAAAGGGCCGTTACAGGCTTATTGTTGTGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGaaaa                                                                            >  7:120640/1‑132 (MQ=255)                                                            ggccctttCGCGGGCAAGCCCGCGAAGGGGCCGTTACAGGCTTATTGTTGTGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAgg                                                          >  7:100394/7‑148 (MQ=39)                                                            ggCCTCTTCGCGGGCTTGCCCGCGAAAGGGCCGTTACAGGCTTATTGTTGTGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAGgc                                                         <  2:15338/149‑1 (MQ=255)                                                             gCCTCTTCGCGGGCTTGCCCGCGAAAGGGCCGTTACAGGCTTATTGTTGTGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAGgc                                                         >  5:107319/1‑148 (MQ=255)                                                              ccctttCGCGGGCAAGCCCGCGAAGAGGCCGTTACAGGCTTATTGTTGTGGCGGGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAGgc                                                         >  1:206082/5‑148 (MQ=38)                                                                tctTCGCGGGCTTGCCCGCGAAAGGGCCGTTACAGGCTTATTGTTGTGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAGgcaag                                                      >  2:102416/1‑148 (MQ=255)                                                                  ttCGCGGGCTTGCCCGCGAAAGGGCCGTTACAGGCTTATTGTTGTGGC‑GGtgggctacagcctgctgctggactggagccgtaacgcggcgcagcagccgccacaacaa                                                                                           <  2:244722‑M1/109‑60 (MQ=255)                                                                  ttCGCGGGCTTGCCCGCGAAAGGGCCGTTACAGGCTTATTGTTGTGGC‑GGtgggctacagcctgctgctggactggagccgtaacgcggcgcagcagccgccacaacaa                                                                                           >  1:244722‑M1/1‑50 (MQ=255)                                                                   tCGCGGGCAAGCCCGCGAAGGGGCCGTTACAGGCTTATTGTTGTGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAGgcaagcaa                                                   <  8:100394/148‑1 (MQ=255)                                                                    cgcgGGCAAGCCCGCGAAAGGGCCGTTACAGGCTTATTGTTGTGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCcagca                                                                                                                      <  1:238669/80‑1 (MQ=255)                                                                    cgcgGGCAAGCCCGCGAAAGGGCCGTTACAGGCTTATTGTTGTGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCcagca                                                                                                                      >  2:238669/1‑80 (MQ=255)                                                                      cgGGCTTGCCCGCGAAAGGGCCGTTACAGGCTTATTGTTGTGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAGGCAAGCAAgccg                                               >  3:57229/1‑149 (MQ=255)                                                                       cggCTTGCCCGCGAAAGGTCCGTTACAGGCTTATTGTTGTGGC‑GGCTGCTGCGCCGCGTTACGTCTCCAGAACAGCAGCATGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATTAAAACGCCAATGAATCCAAATGCAAGCAAgccgc                                              >  2:101314/2‑149 (MQ=255)                                                                           aagCCCGCGAAAGGGCCGTTACAGGCTTATTGTTGTGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTCTAGCCTACCGCCCGCAACGTCGGCCCGATGAAAAGTCCAATGAAGCCAAACGCAAGCAAGCCGCAGa                                           >  8:227386/3‑148 (MQ=255)                                                                               ccGCGAAAGGGCCGTTACAGGCTTATTGTTGTGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAGGCAAGCAAGCCGCCGAACACg                                      >  4:40960/1‑149 (MQ=255)                                                                                cgcgAAAGGGCCGTTACAGGCTTATTGTTGTGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTCTAGCCTAACGCCAGCAAGCTCGGCCCGATGAAAAGGCCAATGAAGCAAAAGCCAAGCAACCCGCCGAACAAGc                                     >  6:73525/1‑149 (MQ=255)                                                                                cgcgAAAGGGCCGTTACAGGCTTATTGTTGTGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGAAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAGGCAAGCAAGCCGCCGAACACGc                                     >  7:117497/1‑149 (MQ=255)                                                                                         gCCGTTACAGGCTTATTGTTGTGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAGGCAAGCAAGCCGCCGAACACGCCCAgcagca                            >  8:198837/1‑149 (MQ=255)                                                                                          ccGTTACAGGCTTATTGTTGTGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCa                                                                                              <  6:19123/82‑1 (MQ=255)                                                                                          ccGTTACAGGCTTATTGTTGTGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCa                                                                                              >  5:19123/1‑82 (MQ=255)                                                                                                cAGGCTTATTGTTGTGGG‑GGGTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCAAGGTGTGCCCGATGAAAAGGCCAATGAAGCCAAAGGCAAGCAAGCCGCCGAACTCGCCCAGCAGCACGATCa                      <  5:73525/148‑1 (MQ=255)                                                                                                cAGGCTTATTGTTGTGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAGGCAAGCAAGCCGCCGAACACGCCCAGCAGCACGATCAc                     <  8:198323/149‑1 (MQ=255)                                                                                                 aGGCTTATTGTTGTGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAGGCAAGCAAGCCGCCGAACACGCCCAGCAGCACGATCAc                     >  5:154742/1‑148 (MQ=255)                                                                                                    cTTATTGTTGTGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGAAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAGGCAAGCAAGCCGCCGAACACGCCCAGCAGCACGATCACCAGc                 <  8:117497/149‑1 (MQ=255)                                                                                                        ttgttgTGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCCAccgccacaacaataagcctgtaacggccctttcgcgggcaagcccgcgaa                                                     <  2:244722‑M2/109‑51 (MQ=255)                                                                                                        ttgttgTGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCCAccgccacaacaataagcctgtaacggccctttcgcgggcaagcccgcgaa                                                     >  1:244722‑M2/1‑59 (MQ=255)                                                                                                         tgttgtGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAGGCAAGCAAGCCGCCGAACACGCCCAGCAGCACGATCACCAGCGGCAg            >  4:136110/1‑149 (MQ=255)                                                                                                           ttgtGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTAccgccacaacaataagcctgtaacggccctttcgcgggcaagcccgcgaagaggccgttacaggcagaccacaacgctgatttttacgcattc          <  8:67858‑M2/149‑94 (MQ=255)                                                                                                                gc‑ggcTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAGGCAAGCAAGCCGCCGAACACGCCCAGCAGCACGATCACCAGCGGCAGGTTgccg     >  7:100053/1‑149 (MQ=255)                                                                                                                   ggcTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAGGCAAGCAAGCCGCCGAACACGCCCAGCAGCACGATCACCAGCGGCAGGTTgccgcc   <  7:198837/149‑1 (MQ=255)                                                                                                                    gctgctGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAGGCAAGCAAGCCGCCGAACACGCCCAGCAGCACGATCACCAGCGGCAACCTgccgctg  <  4:57229/149‑3 (MQ=255)                                                                                                                    |                                                                                                                                                     GGGGGGTGGGGGTGGGTATAAAGAATGCGTAAAAATCAGCGTTGTGGTCTGCCTGTAACGGCCTCTTCGCGGGCTTGCCCGCGAAAGGGCCGTTACAGGCTTATTGTTGTGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAGGCAAGCAAGCCGCCGAACACGCCCAGCAGCACGATCACCAGCGGCAGGTTGCCGCCA  >  NC_002947/4705339‑4705601

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.