New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4705453	33 (0.780)	3 (0.070)	3/246	NT	6.9%	coding (1039/1053 nt)	PP_4162	membrane protein
	?	NC_002947	= 4705500	49 (1.220)					coding (992/1053 nt)	PP_4162	membrane protein

AAAAATCAGCGTTGTGGTCTGCCTGTAACGGCCTCTTCGCGGGCTTGCCCGCGAAAGGGCCGTTACAGGCTTATTGTTGTGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAGGCAAGCAAGCCGCCGAACACGCCCAGCAGCACGATCACCAGCGGCAGGTTGCCGCCACGGCTGATCAGGTACGGTTTGAGCACGTTGTCCACACCGCTGAT  >  NC_002947/4705369‑4705645                                                                                                                                     |                                                                                                                                                  aaaaaTCAGCGTTGTGGTCTGCCTGTAACGGCCTCTTCGCGGGCTTGCCCGCGAAAGGGCCGTTACAGGCTTATTGTTGTGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGc                                                                                                                                  >  7:198323/1‑149 (MQ=255)   aaaTCAGCGTTGTGGTCTGCCTGTAACGGCCTCTTCGCGGGCTTGCCCGCGAAAGGGCCGTTACAGGCTTATTGTTGTGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGccc                                                                                                                                >  3:144377/1‑149 (MQ=255)      tCAGCGTTGTGGTCTGCCTGTAACCGCCTCTTCGCGGGCTAGCCCGCGAAAGGGCCGTTACAGGCTTATTGTTGTGGC‑GGCTGCTTCGCCGCGTTACGGCTCCAGTCCCGCAGCATGCTGTAGCCTCCCGCCAGCCAGGTCGGCCCGAt                                                                                                                             >  5:7277/1‑149 (MQ=255)               tgGTCTGCCTGTAACGGCCTCTTCGCGGGCTTGCCCGCGAAAGGGCCGTTACAGGCTTATTGTTGTGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGcc                                                                                                                    <  8:80645/149‑1 (MQ=255)                  tCTGCCTGTAACGGCCTCTTCGCGGGCTTGCCCGCGAAAGGGCCGTTACAGGCTTATTGTTGTGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAAt                                                                                                                 >  1:15338/1‑149 (MQ=255)                         gTAACGGCCCTTTCGCGGGCAAGCCCGCGAAGAGGCCGTTACAGGCTTATTGTTGTGGC‑GGCTGCTGAGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCAACCGCCAGCAAGGTCGGCCCGATGAAAAGGACAATGAAGcc                                                                                                           >  6:176798/1‑148 (MQ=37)                            aCGGCCTCTTCGCGGGCTTGCCCGCGAAAGGGCCGTTACAGGCTTATTGTTGTGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGaaaa                                                                                                                        >  7:120640/1‑132 (MQ=255)                            aCGGCCTCTTCGCGGGCTTGCCCGCGAAAGGGCCGTTACAGGCTTATTGTTGTGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGaaaa                                                                                                                        <  8:120640/132‑1 (MQ=255)                              ggccctttCGCGGGCAAGCCCGCGAAGGGGCCGTTACAGGCTTATTGTTGTGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAgg                                                                                                      >  7:100394/7‑148 (MQ=39)                              ggCCTCTTCGCGGGCTTGCCCGCGAAAGGGCCGTTACAGGCTTATTGTTGTGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAGgc                                                                                                     <  2:15338/149‑1 (MQ=255)                               gCCTCTTCGCGGGCTTGCCCGCGAAAGGGCCGTTACAGGCTTATTGTTGTGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAGgc                                                                                                     >  5:107319/1‑148 (MQ=255)                                ccctttCGCGGGCAAGCCCGCGAAGAGGCCGTTACAGGCTTATTGTTGTGGCGGGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAGgc                                                                                                     >  1:206082/5‑148 (MQ=38)                                  tctTCGCGGGCTTGCCCGCGAAAGGGCCGTTACAGGCTTATTGTTGTGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAGgcaag                                                                                                  >  2:102416/1‑148 (MQ=255)                                     tCGCGGGCAAGCCCGCGAAGGGGCCGTTACAGGCTTATTGTTGTGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAGgcaagcaa                                                                                               <  8:100394/148‑1 (MQ=255)                                        cgGGCTTGCCCGCGAAAGGGCCGTTACAGGCTTATTGTTGTGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAGGCAAGCAAgccg                                                                                           >  3:57229/1‑149 (MQ=255)                                         cggCTTGCCCGCGAAAGGTCCGTTACAGGCTTATTGTTGTGGC‑GGCTGCTGCGCCGCGTTACGTCTCCAGAACAGCAGCATGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATTAAAACGCCAATGAATCCAAATGCAAGCAAgccgc                                                                                          >  2:101314/2‑149 (MQ=255)                                             aagCCCGCGAAAGGGCCGTTACAGGCTTATTGTTGTGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTCTAGCCTACCGCCCGCAACGTCGGCCCGATGAAAAGTCCAATGAAGCCAAACGCAAGCAAGCCGCAGa                                                                                       >  8:227386/3‑148 (MQ=255)                                                 ccGCGAAAGGGCCGTTACAGGCTTATTGTTGTGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAGGCAAGCAAGCCGCCGAACACg                                                                                  >  4:40960/1‑149 (MQ=255)                                                  cgcgAAAGGGCCGTTACAGGCTTATTGTTGTGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTCTAGCCTAACGCCAGCAAGCTCGGCCCGATGAAAAGGCCAATGAAGCAAAAGCCAAGCAACCCGCCGAACAAGc                                                                                 >  6:73525/1‑149 (MQ=255)                                                  cgcgAAAGGGCCGTTACAGGCTTATTGTTGTGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGAAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAGGCAAGCAAGCCGCCGAACACGc                                                                                 >  7:117497/1‑149 (MQ=255)                                                           gCCGTTACAGGCTTATTGTTGTGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAGGCAAGCAAGCCGCCGAACACGCCCAgcagca                                                                        >  8:198837/1‑149 (MQ=255)                                                            ccGTTACAGGCTTATTGTTGTGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCa                                                                                                                                          <  6:19123/82‑1 (MQ=255)                                                            ccGTTACAGGCTTATTGTTGTGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCa                                                                                                                                          >  5:19123/1‑82 (MQ=255)                                                                  cAGGCTTATTGTTGTGGG‑GGGTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCAAGGTGTGCCCGATGAAAAGGCCAATGAAGCCAAAGGCAAGCAAGCCGCCGAACTCGCCCAGCAGCACGATCa                                                                  <  5:73525/148‑1 (MQ=255)                                                                  cAGGCTTATTGTTGTGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAGGCAAGCAAGCCGCCGAACACGCCCAGCAGCACGATCAc                                                                 <  8:198323/149‑1 (MQ=255)                                                                   aGGCTTATTGTTGTGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAGGCAAGCAAGCCGCCGAACACGCCCAGCAGCACGATCAc                                                                 >  5:154742/1‑148 (MQ=255)                                                                      cTTATTGTTGTGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGAAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAGGCAAGCAAGCCGCCGAACACGCCCAGCAGCACGATCACCAGc                                                             <  8:117497/149‑1 (MQ=255)                                                                          ttgttgTGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCCAccgccacaacaataagcctgtaacggccctttcgcgggcaagcccgcgaa                                                                                                 <  2:244722‑M2/109‑51 (MQ=255)                                                                          ttgttgTGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCCAccgccacaacaataagcctgtaacggccctttcgcgggcaagcccgcgaa                                                                                                 >  1:244722‑M2/1‑59 (MQ=255)                                                                           tgttgtGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAGGCAAGCAAGCCGCCGAACACGCCCAGCAGCACGATCACCAGCGGCAg                                                        >  4:136110/1‑149 (MQ=255)                                                                             ttgtGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTAccgccacaacaataagcctgtaacggccctttcgcgggcaagcccgcgaagaggccgttacaggcagaccacaacgctgatttttacgcattc                                                      <  8:67858‑M2/149‑94 (MQ=255)                                                                                  gc‑ggcTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAGGCAAGCAAGCCGCCGAACACGCCCAGCAGCACGATCACCAGCGGCAGGTTgccg                                                 >  7:100053/1‑149 (MQ=255)                                                                                     ggcTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAGGCAAGCAAGCCGCCGAACACGCCCAGCAGCACGATCACCAGCGGCAGGTTgccgcc                                               <  7:198837/149‑1 (MQ=255)                                                                                      gctgctGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAGGCAAGCAAGCCGCCGAACACGCCCAGCAGCACGATCACCAGCGGCAACCTgccgctg                                              <  4:57229/149‑3 (MQ=255)                                                                                          ctgcGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAGGCAAGCAAGCCGCCGAACACGCCCAGCAGCACGATCACCAGCGGCAGGTTGCCGCCACGGc                                          <  5:41686/149‑1 (MQ=255)                                                                                          ctgcGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAGGCAAGCAAGCCGCCGAACACGCCCAGCAGCACGATCACCAGCGGCAACCTgccgctggtga                                          <  6:107319/149‑7 (MQ=255)                                                                                                 gcgTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAGGCAAGCAAGCCGCCGAACACGCCCAGCAGCACGATCACCAGCGGCAGGTTGCCGCCACGGCTGATCAg                                   <  6:154742/149‑1 (MQ=255)                                                                                                  cgTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAGGCAAGCAAGCCGCCGAACACGCCCAGCAGCACGATCACCAGCGGCAGGTTGCCGCCACGGCTGATCAgg                                  <  8:100053/149‑1 (MQ=255)                                                                                                    ttACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAGGCAAGCAAGCCGCCGAACACGCCCAGCAGCACGATCACCAGCGGCAGGTTGCCGCCACGGCTGATCAGGTa                                <  4:144377/149‑1 (MQ=255)                                                                                                      aCGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAGGCAAGCAAGCCGCCGAACACGCCCAGCAGCACGATCACCAGCGGCAGGTTGCCGCCACGGCTGATCAGGTACg                              >  3:118836/1‑149 (MQ=255)                                                                                                      aCGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAGGCAAGCAAGCCGCCGAACACGCCCAGCAGCACGATCACCAGCGGCAGGTTGCCGCCACGGCTGATCAGCTAc                               <  6:7277/148‑1 (MQ=255)                                                                                                         gCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAGGCAAGCAAGCCGCCGAACACGCCCAGCAGCACGATCACCAGCGGCAGGTTGCCGCCACGGCTGATCAGGTACGGtt                           >  4:123174/1‑149 (MQ=255)                                                                                                             cagtccagCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCATAGGCAAGCAAGCCGCCGAACACGCCCAGCAGCACGATCACCAGCGGCAGGTTGCCGCCACGGCTGATCAGGTACGGTTTGa                        <  5:176798/148‑1 (MQ=255)                                                                                                             cagtccagCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAGGCAAGCAAGCCGCCGAACACGCCCAGCAGCACGATCACCAGCGGCAGGTTGCCGCCACGGCTGATCAGGTACGGTTTg                         <  2:206082/147‑1 (MQ=255)                                                                                                              ggcgcagcagcagGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAGGCAAGCAAGCCGCCGAACACGCCCAGCAGCACGATCACCAGCGGCAGGTTGCCGCCACGGCTGATCAGGTACGGTTTGAGc                      <  2:187281/145‑1 (MQ=255)                                                                                                              agtccagCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAGGCAAGCAAGCCGCCGAACACGCCCAGCAGCACGATCACCAGCGGCAGGTTGCCGCCACGGCTGATCAGGTACGGTTTGAg                       >  2:75552/1‑148 (MQ=255)                                                                                                                tccagCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAGGCAAGCAAGCCGCCGAACACGCCCAGCAGCACGATCACCAGCGGCAGGTTGCCGCCACGGCTGATCAGGTACGGTTTg                         <  6:236030/144‑1 (MQ=255)                                                                                                                tccagCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAGGCAAGCAAGCCGCCGAACACGCCCAGCAGCACGATCACCAGCGGCAGGTTGCCGCCACGGCTGATCAGGTACGGTTTg                         >  5:236030/1‑144 (MQ=255)                                                                                                                 ccagCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAGGCAAGCAAGCCGCCGAACACGCCCAGCAGCACGATCACCAGCGGCAGGTTGCCGCCACg                                            <  6:66371/124‑1 (MQ=255)                                                                                                                 ccagCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAGGCAAGCAAGCCGCCGAACACGCCCAGCAGCACGATCACCAGCGGCAGGTTGCCGCCACg                                            >  5:66371/1‑124 (MQ=255)                                                                                                                    gcagcagGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAGGCAAGCAAGCCGCCGAACACGCCCAGCAGCACGATCACCAGCGGCAGGTTGCCGCCACGGCTGATCAGGTACGGTTTGAGCACGTTg                <  4:118836/149‑1 (MQ=255)                                                                                                                       gcagGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAGGCAAGCAAGCCGCCGAACACGCCCAGCAGCACGATCACCAGCGGCAGGTTGCCGCCACGGCTGATCAGGTACGGTTTGAGCACGTTGTcc             >  5:183656/1‑149 (MQ=255)                                                                                                                           gCTGTAGCCTACCGCCAGCAAGGTCGGCCCTATGAAAAGGCCAATGAAGCCAAAGGCAAGCAAGCCGCCGAACACGCCCAGCAGCACGATCACCAGCGGCAGGTTGCCGCCACGGCTGATCAGGTACGGTTTGAGCACGTTGTCCacac         <  6:183656/149‑1 (MQ=255)                                                                                                                                aGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAGGCAAGCAAGCCGCCGAACACGCCCAGCAGCACGATCACCAGCGGCAGGTTGCCGCCACGGCTGATCAGGTACGGTTTGAGCACGTTGTCCACACCGCt     >  8:206691/1‑148 (MQ=255)                                                                                                                                 gCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAGGCAAGCAAGCCGCCGAACACGCCCAGCAGCACGATCACCAGCGGCAGGTTGCCGCCACGGCTGATCAGGTACGGTTTGAGCACGTTGTCCACACCGCtga   <  1:101314/149‑1 (MQ=255)                                                                                                                                  ccTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAGGCAAGCAAGCCGCCGAACACGCCCAGCAGCACGATCACCAGCGGCAGGTTGCCGCCACGGCTGATCAGGTACGGTTTGAGCACGTTGTCCACACCGCtgat  >  4:129033/1‑149 (MQ=255)                                                                                                                                     |                                                                                                                                                  AAAAATCAGCGTTGTGGTCTGCCTGTAACGGCCTCTTCGCGGGCTTGCCCGCGAAAGGGCCGTTACAGGCTTATTGTTGTGGC‑GGCTGCTGCGCCGCGTTACGGCTCCAGTCCAGCAGCAGGCTGTAGCCTACCGCCAGCAAGGTCGGCCCGATGAAAAGGCCAATGAAGCCAAAGGCAAGCAAGCCGCCGAACACGCCCAGCAGCACGATCACCAGCGGCAGGTTGCCGCCACGGCTGATCAGGTACGGTTTGAGCACGTTGTCCACACCGCTGAT  >  NC_002947/4705369‑4705645

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.