New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4727724 =	44 (1.040)	3 (0.070)	3/246	NT	6.9%	intergenic (‑343/+61)	brnQ/sucD	branched‑chain amino acid transporter/succinyl‑CoA synthetase subunit alpha
	?	NC_002947	4727773 =	39 (0.970)					intergenic (‑392/+12)	brnQ/sucD	branched‑chain amino acid transporter/succinyl‑CoA synthetase subunit alpha

TACATGTTTGTCGTCTGTGTGACCGAGGACGGCAGGTATTATCCTCGGATTGAAACATTCGTCTGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACGGTTTTCACACCC  >  NC_002947/4727579‑4727863                                                                                                                                                  |                                                                                                                                            tACATGTTTGTCGTCTGTGTGACCGAGGACGGCAGGTATTATCCTCGGATTGAAACATTCGTCTGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAAcccc                                                                                                                                          <  4:259842/149‑1 (MQ=255)  atctccggcggcaagggcactgcggacgagaagttcgccgccctgcaggacgcgggtgtgaaaaccgtgcgttccctggctgacatcggcaaggccctggccgagctgactggctgggaagccaagaagtaatactgctacacccccc                                                                                                                                          >  8:145083‑M1/145‑148 (MQ=255)  aCATGTTTGTCGTCTGTGTGACCGAGGACGGCAGGTATTATCCTCGGATTGAAACATTCGTCTGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCca                                                                                                                                         >  7:1621/1‑149 (MQ=255)    aTGTTTGTCGTCTGTGTGACCGAGGACGGCAGGTATTATCCTCGGATTGAAACATTCGTCTGCGTGAAAATTCCTATCAAACCTATAGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCCATCCTACGAACCCcac                                                                                                                                        >  1:252629/1‑148 (MQ=255)           tcgtcTGTGTGACCGAGGACGGCAGGTATTATCCTCGGATTGAAACATTCGTCTGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCCACATAcccgt                                                                                                                                >  7:166293/1‑145 (MQ=255)             gtcTGTGTGACCGAGGACGGCAGGTATTATCCTCGGATTGAAACATTCGTCTGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCca                                                                                                                                         >  8:32020/1‑138 (MQ=255)             gtcTGTGTGACCGAGGACGGCAGGTATTATCCTCGGATTGAAACATTCGTCTGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCca                                                                                                                                         <  7:32020/138‑1 (MQ=255)                     gACCGAGGACGGCAGGTATTATCCTCGGATTGAAACATTCGTCTGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCCACATACGACAAAGGCCAccc                                                                                                                      >  2:269876/1‑149 (MQ=255)                         gAGGACGGCAGGTATTATCCTCGGATTGAAACATTCGTCTGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAg                                                                                                                  <  1:269876/149‑1 (MQ=255)                           ggACGGCAGGTATTATCCTCGGATTGAAACAGTCGTCTGCGTGAAACTGCCTATCAACCCTATCGAAGAATCGCTCTTGCCCGCACCGGCCTCTTCGCGGGTAAACCCGCGCCTACGAACCCCACATCCGACAAAGGCCACCCGAAGGt                                                                                                                <  8:104999/149‑1 (MQ=255)                             aCGGCAGGTATTATCCTCGGATTGAAACATTCGTCTGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTgg                                                                                                              <  8:1621/149‑1 (MQ=255)                               ggCAGGTATTATCCTCGGATTGAAACATTCGTCTGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCAAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGcc                                                                                                            >  1:226040/1‑149 (MQ=255)                                gCAGGTATTATCCTCGGATTGAAACATTCGTCTGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCct                                                                                                           <  2:168880/149‑1 (MQ=255)                                     cgccgccctgcaggacgcgggtgtgaaaaccgtgcgttccctggctgacatcggcaaggccctggccgagctgactggctgggaagccaagaagtaatactgctacaccCCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCtgtg                                                                                                      <  1:179811‑M1/40‑1 (MQ=255)                                      attatCCTCGGATTGAAACATTCGTCTGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTgc                                                                                                     >  5:58168/1‑149 (MQ=255)                                         atCCTCGGATTGAAACATTCGTCAGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCAAGCACCGGCCACTTCGCGGGTAAACCAGCTCCTACGAACACCACATACGACAAAGGCCACCCGAAGCAGGCCTCTGTGcgcg                                                                                                  >  6:80103/1‑149 (MQ=255)                                            cTCGGATTGAAACATTCGTCTACGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCC‑CTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTgg                                                                                               <  3:33059/148‑1 (MQ=255)                                               caggacgcgggtgtgaaaaccgtgcgttccctggctgacatcggcaaggccctggccgagctgactggctgggaagccaagaagtaatactgctacaccCCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTggggg                                                                                            >  6:83705‑M1/100‑149 (MQ=255)                                                aggacgcgggtgtgaaaaccgtgcgttccctggctgacatcggcaaggccctggccgagctgactggctgggaagccaagaagtaatactgctacaccCCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTgggggg                                                                                           >  2:179811‑M1/99‑149 (MQ=255)                                                     aaaCATTCGTCTGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAg                                                                                      >  6:168479/1‑149 (MQ=255)                                                         aTTCGTCTGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTgg                                                                                               <  3:150359/136‑1 (MQ=255)                                                         aTTCGTCTGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTgg                                                                                               >  4:150359/1‑136 (MQ=255)                                                         aTTCGTCTGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGt                                                                                  <  6:58168/149‑1 (MQ=255)                                                                   gTGAAAATTCCTATCAAACCTATCCAAGAATCTCTATTGCCAGCTCCGGCCTCTTCGCGGGTAAAGCCGGTCCTACGAACCCCACATACGACATAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTActtctt                                                                        <  5:80103/149‑1 (MQ=255)                                                                     gAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTgg                                                                      <  7:4204/149‑1 (MQ=255)                                                                      aaaaTTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGcc                                                                                                            >  4:52005/1‑110 (MQ=255)                                                                      aaaaTTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGcc                                                                                                            <  3:52005/110‑1 (MQ=255)                                                                      aaaaTTCCTATCAAACATATCTAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTgg                                                                      <  4:197618/148‑1 (MQ=255)                                                                          ttCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGgtg                                                                                         >  2:31243/1‑125 (MQ=255)                                                                          ttCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGgtg                                                                                         <  1:31243/125‑1 (MQ=255)                                                                              tATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCccagc                                                             >  6:222398/1‑149 (MQ=255)                                                                                tCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCccagc                                                             >  3:238506/1‑147 (MQ=255)                                                                                           gaagaaTCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGc                                                >  3:16068/1‑149 (MQ=255)                                                                                                   tctATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCt                                        >  7:155808/1‑149 (MQ=255)                                                                                                     tATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTg                                      >  6:93166/1‑149 (MQ=255)                                                                                                       ttGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCtt                                       <  5:222398/146‑1 (MQ=255)                                                                                                           cAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATg                                >  3:29330/1‑149 (MQ=255)                                                                                                            aGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGGTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGt                               >  8:250790/1‑149 (MQ=255)                                                                                                             gCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGt                               >  8:169123/1‑148 (MQ=255)                                                                                                               aCCGGCCTCTTAGCCGGTAAACCCGCTCCTACGAACCCCCCATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGGGCGTGGGGGGTGTAGCAGTATTAATTATTGGCTTCCCACCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAg                            >  2:130264/1‑149 (MQ=255)                                                                                                                ccGGCCTCTTCGCTGGTAAACCCGCTCCTACGAACCCCACTAACGACAAATGCCACCCGAAGGTGTCCTCTGTGCGCGTGGGGGGTGTTGCAGTATTACTTCTTTGCTTCCCAGCCAGTCAGATCTCCCAGGGCCTTGCCGATGTCAGc                           <  7:169123/149‑1 (MQ=255)                                                                                                                 cGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGc                           >  2:178479/1‑148 (MQ=255)                                                                                                                    ccTCTTCGCGGGTAAACCCGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAgg                       <  1:130264/149‑1 (MQ=255)                                                                                                                        ttCGCGGGTAAACCCGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAgg                                            <  7:179362/124‑1 (MQ=255)                                                                                                                        ttCGCGGGTAAACCCGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAgg                                            >  8:179362/1‑124 (MQ=255)                                                                                                                             gggTAAACCCGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACg              <  8:113661/149‑1 (MQ=255)                                                                                                                                  aaCCCGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACGGtttt         <  1:236780/149‑1 (MQ=255)                                                                                                                                   aCCCGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACGGtttt         >  5:118843/1‑148 (MQ=255)                                                                                                                                     ccGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACGGTTTTca       >  3:99031/1‑148 (MQ=255)                                                                                                                                       gCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTgg                                                                                               <  3:96344/58‑1 (MQ=255)                                                                                                                                       gCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTgg                                                                                               >  4:96344/1‑58 (MQ=255)                                                                                                                                         tCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACGGTTTTCACAccc  >  5:172295/1‑149 (MQ=255)                                                                                                                                             aCGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACg              <  7:179113/133‑1 (MQ=255)                                                                                                                                             aCGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACg              >  8:179113/1‑133 (MQ=255)                                                                                                                                                  |                                                                                                                                            TACATGTTTGTCGTCTGTGTGACCGAGGACGGCAGGTATTATCCTCGGATTGAAACATTCGTCTGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACGGTTTTCACACCC  >  NC_002947/4727579‑4727863

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.