New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4727724 =	44 (1.040)	3 (0.070)	3/246	NT	6.9%	intergenic (‑343/+61)	brnQ/sucD	branched‑chain amino acid transporter/succinyl‑CoA synthetase subunit alpha
	?	NC_002947	4727773 =	39 (0.970)					intergenic (‑392/+12)	brnQ/sucD	branched‑chain amino acid transporter/succinyl‑CoA synthetase subunit alpha

GGATTGAAACATTCGTCTGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACGGTTTTCACACCCGCGTCCTGCAGGGCGGCGAACTTCTCGTCCGCAGTGCCCTTGCCGCCGGAGAT  >  NC_002947/4727625‑4727916                                                                                                                                                     |                                                                                                                                                caggacgcgggtgtgaaaaccgtgcgttccctggctgacatcggcaaggccctggccgagctgactggctgggaagccaagaagtaatactgctacaccCCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTggggg                                                                                                                                                 >  6:83705‑M1/100‑149 (MQ=255)  aggacgcgggtgtgaaaaccgtgcgttccctggctgacatcggcaaggccctggccgagctgactggctgggaagccaagaagtaatactgctacaccCCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTgggggg                                                                                                                                                >  2:179811‑M1/99‑149 (MQ=255)       aaaCATTCGTCTGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAg                                                                                                                                           >  6:168479/1‑149 (MQ=255)           aTTCGTCTGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGt                                                                                                                                       <  6:58168/149‑1 (MQ=255)                     gTGAAAATTCCTATCAAACCTATCCAAGAATCTCTATTGCCAGCTCCGGCCTCTTCGCGGGTAAAGCCGGTCCTACGAACCCCACATACGACATAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTActtctt                                                                                                                             <  5:80103/149‑1 (MQ=255)                       gAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTgg                                                                                                                           <  7:4204/149‑1 (MQ=255)                        aaaaTTCCTATCAAACATATCTAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTgg                                                                                                                           <  4:197618/148‑1 (MQ=255)                            ttCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGgtg                                                                                                                                              <  1:31243/125‑1 (MQ=255)                            ttCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGgtg                                                                                                                                              >  2:31243/1‑125 (MQ=255)                                tATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCccagc                                                                                                                  >  6:222398/1‑149 (MQ=255)                                  tCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCccagc                                                                                                                  >  3:238506/1‑147 (MQ=255)                                             gaagaaTCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGc                                                                                                     >  3:16068/1‑149 (MQ=255)                                                     tctATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCt                                                                                             >  7:155808/1‑149 (MQ=255)                                                       tATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTg                                                                                           >  6:93166/1‑149 (MQ=255)                                                         ttGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCtt                                                                                            <  5:222398/146‑1 (MQ=255)                                                             cAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATg                                                                                     >  3:29330/1‑149 (MQ=255)                                                              aGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGGTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGt                                                                                    >  8:250790/1‑149 (MQ=255)                                                               gCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGt                                                                                    >  8:169123/1‑148 (MQ=255)                                                                 aCCGGCCTCTTAGCCGGTAAACCCGCTCCTACGAACCCCCCATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGGGCGTGGGGGGTGTAGCAGTATTAATTATTGGCTTCCCACCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAg                                                                                 >  2:130264/1‑149 (MQ=255)                                                                  ccGGCCTCTTCGCTGGTAAACCCGCTCCTACGAACCCCACTAACGACAAATGCCACCCGAAGGTGTCCTCTGTGCGCGTGGGGGGTGTTGCAGTATTACTTCTTTGCTTCCCAGCCAGTCAGATCTCCCAGGGCCTTGCCGATGTCAGc                                                                                <  7:169123/149‑1 (MQ=255)                                                                   cGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGc                                                                                >  2:178479/1‑148 (MQ=255)                                                                      ccTCTTCGCGGGTAAACCCGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAgg                                                                            <  1:130264/149‑1 (MQ=255)                                                                          ttCGCGGGTAAACCCGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAgg                                                                                                 >  8:179362/1‑124 (MQ=255)                                                                          ttCGCGGGTAAACCCGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAgg                                                                                                 <  7:179362/124‑1 (MQ=255)                                                                               gggTAAACCCGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACg                                                                   <  8:113661/149‑1 (MQ=255)                                                                                    aaCCCGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACGGtttt                                                              <  1:236780/149‑1 (MQ=255)                                                                                     aCCCGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACGGtttt                                                              >  5:118843/1‑148 (MQ=255)                                                                                       ccGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACGGTTTTca                                                            >  3:99031/1‑148 (MQ=255)                                                                                           tCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACGGTTTTCACAccc                                                       >  5:172295/1‑149 (MQ=255)                                                                                               aCGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACg                                                                   <  7:179113/133‑1 (MQ=255)                                                                                               aCGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACg                                                                   >  8:179113/1‑133 (MQ=255)                                                                                                  ccccccacgcgcacagaggccaccttcgggtggcctttgtcgtatgtggggGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACGGTTTTCACACCCGCGTCCt                                                >  2:179811‑M2/52‑149 (MQ=255)                                                                                                   cccccacgcgcacagaggccaccttcgggtggcctttgtcgtatgtggggGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACGGTTTTCACACCCGCGTCCTg                                               >  6:83705‑M2/51‑149 (MQ=255)                                                                                                       CACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGACTTGCAGATGTCAGCAAGGGAACGCACGGTTTTCACACACGCGGCCTGCAgg                                           <  4:198113‑M1/149‑1 (MQ=255)                                                                                                          aTACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACGGTTTTCACACCCGCGTCCTGCAGggcg                                        >  4:20061/1‑149 (MQ=255)                                                                                                             cacagaggccaccttcgggtggcctttgtcgtatgtggggGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACGGTTTTCACACCCGCGTCCTGCAGGgcggcg                                     <  1:179811‑M2/109‑1 (MQ=255)                                                                                                                cAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACGGTTTTCACACCCGCGTCCTGCAGGGCGGCGAAc                                  >  6:206515/1‑149 (MQ=255)                                                                                                                cAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACGGTTTTCACACCCGCGTCCTGCAGGGCGGCGAAc                                  >  2:202480/1‑149 (MQ=255)                                                                                                                   aGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACGGTTTTCACACCCGCGTCCTGCAGGGCGGCGAACTtc                               >  5:182794/1‑149 (MQ=255)                                                                                                                   aGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACGGTTTTCACACCCGCATCCTGCAGGGCGGCGAACTtc                               <  8:155808/149‑1 (MQ=255)                                                                                                                       cACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCTAGGGCCTTGCCGATGTCAGCCAGGGAACGCACGGTTTTcaca                                                          <  1:52182/118‑1 (MQ=255)                                                                                                                       cACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACGGTTTTcaca                                                          >  2:52182/1‑118 (MQ=255)                                                                                                                           cGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACGGTTTTCACACCCGCGTCCTGCAGGgcggcg                                     <  7:118439/135‑1 (MQ=255)                                                                                                                           cGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACGGTTTTCACACCCGCGTCCTGCAGGgcggcg                                     >  8:118439/1‑135 (MQ=255)                                                                                                                                gTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACGGTTTTCACACCCGCGTCCTGCAGGGCGGCGAACTTCTCGTCCGCAGTGc                  <  4:99031/149‑1 (MQ=255)                                                                                                                                    ccTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACGGTTTTCACACCCGCGTCCTGCAGGGCGGCGAACTTCTCGTCCGCAGTGCCCtt              <  6:172295/149‑1 (MQ=255)                                                                                                                                         gtgCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACGGTTTTCACACCCGCGTCCTGCAGGGCGGCGAACTTCTCGTCCGCAGTGCCCTTgccgc         >  1:243540/1‑149 (MQ=255)                                                                                                                                             gcgTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCTAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACGGTTTTCACACCCGCGTCCTGCAGGGCGGCGAACTTCTCGTCCGCAGTGCCCTTGCCGCCGga     <  5:168479/149‑1 (MQ=255)                                                                                                                                              cgTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACGGTTTTCACACCCGCGTCCTGCAGGGCGGCGAACTTCTCGTCCGCAGTGCCCTTGCCGCCGgag    <  2:226040/149‑1 (MQ=255)                                                                                                                                                 ggggGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACGGTTTTCACACCCGCGTCCTGCAGGGCGGCGAACTTCTCGTCCGCAGTGCCCTTGCCGCCGGAgat  >  8:145083‑M2/5‑148 (MQ=255)                                                                                                                                                     |                                                                                                                                                GGATTGAAACATTCGTCTGCGTGAAAATTCCTATCAAACCTATCGAAGAATCTCTATTGCCAGCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAACCCCACATACGACAAAGGCCACCCGAAGGTGGCCTCTGTGCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACGGTTTTCACACCCGCGTCCTGCAGGGCGGCGAACTTCTCGTCCGCAGTGCCCTTGCCGCCGGAGAT  >  NC_002947/4727625‑4727916

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.