New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5211690	29 (0.690)	3 (0.080)	3/242	NT	8.7%	coding (260/1638 nt)	PP_4592	metal dependent hydrolase
	?	NC_002947	= 5211711	36 (0.910)					coding (239/1638 nt)	PP_4592	metal dependent hydrolase

CCACAGCAGCACCGATGGCAGCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGACTCAGCCACAACCCCGAAAGGCC  >  NC_002947/5211545‑5211835                                                                                                                                                  |                                                                                                                                                  ccACAGCAGCACCGATGGCAGCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAg                                                                                                                                                 <  2:254735/148‑1 (MQ=255)          caCCGATGGCAGCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGA                                                                                                                                                   >  5:2272‑M1/1‑137 (MQ=255)          caCCGATGGCAGCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGA                                                                                                                                                   <  6:2272‑M1/137‑1 (MQ=255)                   cagcaCACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCa                                                                                                                               >  4:145210/1‑148 (MQ=255)                           ccAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACtcatgaa                                                                                                                       <  5:93721‑M2/148‑8 (MQ=255)                           ccAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACtcatgaa                                                                                                                       <  2:71290‑M2/148‑8 (MQ=255)                             agcagcagGATATACGCGGCAAACTTGAACGACATCAAGTCGCTCACCTCCGCAATATTGGGCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAgttgcgcgggcgtggcttacttcatgaacca                                                                                                                    <  5:169898‑M1/149‑32 (MQ=255)                                agcagGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAgtggcgcgggcgtggcttacttcatgaaccag                                                                                                                   >  6:155122‑M1/1‑115 (MQ=255)                                agcagGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAgtggcgcgggcgtggcttacttcatgaaccag                                                                                                                   <  5:155122‑M1/147‑33 (MQ=255)                                agcagGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAacac                                                                                                                 <  3:145210/149‑1 (MQ=255)                                  cagGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGa                                                                                                               >  8:140058/1‑149 (MQ=255)                                   agGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAACCACGCCCGCGCCACtcatgaa                                                                                                                       <  3:246250‑M2/140‑8 (MQ=255)                                   agGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAACCACGCCCGCGCCACtcatgaa                                                                                                                       >  4:246250‑M2/1‑133 (MQ=255)                                            gcgGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACtcatgaa                                                                                                                       >  8:196279‑M2/1‑124 (MQ=255)                                            gcgGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACtcatgaa                                                                                                                       <  7:196279‑M2/131‑8 (MQ=255)                                             cgGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGTTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGc                                                                                                    <  8:221414/149‑1 (MQ=255)                                                 aaaCTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAATCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCa                                                                                                <  6:93721/149‑1 (MQ=255)                                                 aaaCTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCa                                                                                                >  3:134849/1‑149 (MQ=255)                                                   aCTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCAc                                                                                               >  7:125193/1‑148 (MQ=255)                                                   aCTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACt                                                                                              <  7:140058/149‑1 (MQ=255)                                                         aCGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCTTCAATAAGTAAGCCGTAATGGTTCATGAAGTAAGCCACTCCAGCGCCACTCATGAAAAACAAGATAATTACAGGCTTCAatacatac                                                                                        >  7:161064/1‑149 (MQ=255)                                                         aCGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATAc                                                                                        <  7:157480/149‑1 (MQ=255)                                                              aTCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCgg                                                                                     >  8:34908/1‑147 (MQ=255)                                                                  aGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCa                                                                               <  8:238869/149‑1 (MQ=255)                                                                      gcgcACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCgcgc                                                                                                                                 >  6:35226/1‑95 (MQ=255)                                                                      gcgcACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCgcgc                                                                                                                                 <  5:35226/95‑1 (MQ=255)                                                                      gcgcACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAAtt                                                                            >  4:46081/1‑148 (MQ=255)                                                                        gcACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAAc                                                                         <  1:71290/149‑1 (MQ=255)                                                                          aCCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTaa                                                                                                                                              <  6:264560/78‑1 (MQ=255)                                                                          aCCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTaa                                                                                                                                              >  5:264560/1‑78 (MQ=255)                                                                          aCCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGt                                                                       >  2:225170/1‑149 (MQ=255)                                                                          aCCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGt                                                                       <  4:134849/149‑1 (MQ=255)                                                                               cGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACtcatgaa                                                                                                                       <  8:19940‑M2/96‑8 (MQ=255)                                                                               cGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACtcatgaa                                                                                                                       >  7:19940‑M2/1‑89 (MQ=255)                                                                               cGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAg                                                                    <  8:125193/147‑1 (MQ=255)                                                                                         gTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGaa                                                        >  3:87609/1‑149 (MQ=255)                                                                                                ccATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAAcgcg                                                    >  6:177650/1‑146 (MQ=255)                                                                                                           aaCATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATcagcac                                      <  7:34908/149‑1 (MQ=255)                                                                                                            aCATGCCGGAGTTAATAAGTAAGCCGTACTTGTTCATGAAGTAAGCCAGGCCCTCGACACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGTAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATcagcac                                      <  8:161064/148‑1 (MQ=255)                                                                                                                             aGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGACTCAg                    <  4:87609/149‑1 (MQ=255)                                                                                                                                     gTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGACTCAGCCACAAcc            >  7:235921/1‑149 (MQ=255)                                                                                                                                      tACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGACTCAGCCACAAccc           <  5:177650/149‑1 (MQ=255)                                                                                                                                        cTGGTTCATGAAGTAAGCCACGCCCGCGCCACtcatgaaccagtacggcgtacttattgacgccggcatgttccgtaatatggccgagaccaatattgcggaggtgcgcgacttgatgtcgttcaagtttgccgcgtatatcctgct           <  5:155122‑M2/147‑116 (MQ=255)                                                                                                                                        cTGGTTCATGAAGTAAGCCACGCCCGCGCCACtcatgaaccagtacggcgtacttattgacgccggcatgttccgtaatatggccgagaccaatattgcggaggtgcgcgacttgatgtcgttcaagtttgccgcgtatatcctgct           >  6:155122‑M2/1‑32 (MQ=255)                                                                                                                                         tGGTTCATGAAGTAAGCCACGCCCGCGCAACtcatgaaccagtacggcgtacttattgacgccggcatgttccgtaatatggccgagcccaatattgcggaggtgagcgacttgatgtcgttcaagtttgccgcgtatatcctgctgct        <  5:169898‑M2/149‑119 (MQ=255)                                                                                                                                           gTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAAc                               <  4:162117/124‑1 (MQ=255)                                                                                                                                           gTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAAc                               >  3:162117/1‑124 (MQ=255)                                                                                                                                           gTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGACTCAGCCACAACCCCGaa       <  3:46081/148‑1 (MQ=255)                                                                                                                                            ttCATGAgtggcgcgggcgtggtttacttcatgaaccagtacggcgtacttattgacgccggcatgttccgtaatatggccgagaccaatattgcggaggtgcgcgacttgatgtcgttcaagtttgccgcgtatatcct              >  4:246250‑M1/1‑7 (MQ=255)                                                                                                                                            ttCATGAgtggcgcgggcgtggtttacttcatgaaccagtacggcgtacttattgacgccggcatgttccgtaatatggccgagaccaatattgcggaggtgcgcgacttgatgtcgttcaagtttgccgcgtatatcct              <  3:246250‑M1/140‑134 (MQ=255)                                                                                                                                            ttCATGAgtggcgcgggcgtggcttacttcatgaaccagtacggcgtacttattgacgccggcatgttccgtaatatggccgagaccaatattgcggaggtgcgcgacttgatgtcgttcaagtttgccgcgtatatcctgctgctgg      <  2:71290‑M1/148‑142 (MQ=255)                                                                                                                                            ttCATGAgtggcgcgggcgtggcttacttcatgaaccagtacggcgtacttattgacgccggcatgttccgtaatatggccgagaccaatattgcggaggtgcgcgacttgatgtcgttcaagtttgccgcgtatatcctgctgctgg      <  5:93721‑M1/148‑142 (MQ=255)                                                                                                                                            ttCATGAgtggcgcgggcgtggcttacttcatgaaccagtacggcgtacttattgacgccggcatgttccgtaatatggccgagaccaatattgcggaggtgcgcgacttgatgtcgttcaagtttgccgc                       <  7:196279‑M1/131‑125 (MQ=255)                                                                                                                                            ttCATGAgtggcgcgggcgtggcttacttcatgaaccagtacggcgtacttattgacgccggcatgttccgtaatatggccgagaccaatattgcggaggtgcgcgacttgatgtcgttcaagtttgccgc                       >  8:196279‑M1/1‑7 (MQ=255)                                                                                                                                            ttCATGAgtggcgcgggcgtggcttacttcatgaaccagtacggcgtacttattgacgccggcatgttccgtaatatggccgagaccaatattgcg                                                          >  7:19940‑M1/1‑7 (MQ=255)                                                                                                                                            ttCATGAgtggcgcgggcgtggcttacttcatgaaccagtacggcgtacttattgacgccggcatgttccgtaatatggccgagaccaatattgcg                                                          <  8:19940‑M1/96‑90 (MQ=255)                                                                                                                                               aTGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGGAAACGCCCGACTCAGCCACAACCGCGAATGGcc  >  8:61396/1‑149 (MQ=255)                                                                                                                                                 gAAGTAAGCCACGCCCGCGCCCCTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAaga                                                >  5:228220/1‑101 (MQ=255)                                                                                                                                                 gAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAaga                                                <  6:228220/101‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                  CCACAGCAGCACCGATGGCAGCACACCCAGCAGCAGGATATACGCGGCAAACTTGAACGACATCAAGTCGCGCACCTCCGCAATATTGGTCTCGGCCATATTACGGAACATGCCGGCGTCAATAAGTACGCCGTACTGGTTCATGAAGTAAGCCACGCCCGCGCCACTCATGAACAACACGATAAGTACCGGCTTCACTACATACCGGAAGGCAATTAACGTGAGGATCAGATTGAACGCGAAGAGCATCAGCACAGCAAACGCCAGACTCAGCCACAACCCCGAAAGGCC  >  NC_002947/5211545‑5211835

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.