New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5389220 =	48 (1.140)	3 (0.070)	3/248	NT	5.9%	coding (2730/2811 nt)	dld2	D‑lactate dehydrogenase
	?	NC_002947	5389259 =	50 (1.230)					coding (2769/2811 nt)	dld2	D‑lactate dehydrogenase

GGTGATCCCGGAAGGTATTCATTGCTGCGGGTTTGCCGGTGACAAAGGCTTTACCACCCCCGAGCTGAACGCCCACTCGTTGCGCAGCCTGAAGGACGCCGTGCAGTATTGCAGCGAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCTGGTAGACCGCGTCACCCGGCCACGCAGCCTCTAACGCGTTGATATAGGTGGGGAGCGCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTCCTGC  >  NC_002947/5389073‑5389365                                                                                                                                                    |                                                                                                                                                  gcggtggtggctgcggtggacagtgggtggggattggccagcaggaccggcctcttcgcgggtaaacccgctcctacgcagcgctccccacctatatcaacgcgttagaggctgcgtggccgggtgacgcggtctaccaggtagaccAg                                                                                                                                                  <  7:251851‑M1/2‑1 (MQ=255)   tgATCCCGGAAGGTATTCATTGCTGCGGGTTTGCCGGTGACAAAGGCTTTACCACCCCCGAGCTGAACGCCCACTCGTTGCGCAGCCTGAAGGACGCCGTGCAGTATTGCAGCTAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGc                                                                                                                                                >  8:94892/1‑149 (MQ=255)                     aTTGCTGCGGGTTTGCCGGTGACAAAGGCTTTACCACCCCCGAGCTGAACGCCCACTCGTTGCGCAGCCTGAAGGACGCCGTGCAGTATTGCAGCGAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCgg                                                                                                                               <  5:70345/148‑1 (MQ=255)                     aTTGCTGCGGGTTTGCCGGTGACAAAGGCTTTACCACCCCCGAGCTGAACGCCCACTCGTTGCGCAGCCTGAAGGACGCCGTGCAGTATTGCAGCGAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCgg                                                                                                                               >  1:228105/1‑148 (MQ=255)                                       gttaCAAAGGCTTTACCACCCCCGAGCTGAACGCCCACTCGTTGCGCAGCCTGAAGGACGCCGTGCAGTATTGCAGCGAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTg                                                                                                            <  7:94892/146‑1 (MQ=255)                                       gTGACAAAGGCTTTACCACCCCCGAGCTGAACGCCCACTCGTTGCGCAGCCTGAAGGACGCCGTGCAGTATTGCAGCGAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTg                                                                                                            >  6:265055/1‑149 (MQ=255)                                       gTGACAAAGGCTTTACCACCCCCGAGCTGAACGCCCACTCGTTGCGCAGCCTGAAGGACGCCGTGCAGTATTGCAGCGAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTg                                                                                                            <  2:228105/149‑1 (MQ=255)                                       cagcaggaccggcctcttcgcgggtaaacccgctcctacgcagcgctccccacctatatcaacgcgttagaggctgcgtggccgggtgacgcggtctaccaggtagaccAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTg                                                                                                            >  8:251851‑M1/110‑149 (MQ=255)                                            aaaGGCTTTACCACCCCCGAGCTGAACGCCCACTCGTTGCGCAGCCTGAAGGACGCCGTGCAGTATTGCAGCGAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTa                                                                                                       >  6:261454/1‑149 (MQ=255)                                            aaaGGCTTTACCACCCCCGAGCTGAACGCCCACTCGTTGCGCAGCCTGAAGGACGCCGTGCAGTATTGCAGCGAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTa                                                                                                       >  7:123947/1‑149 (MQ=255)                                            aaaGGCTTTACCACCCCCGAGCTGAACGCCCACTCGTTGCGCAGCCTGAAGGACGCCGTGCAGTATTGCAGCGAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTa                                                                                                       >  2:262549/1‑149 (MQ=255)                                                 cTTTACCACCCCCGAGCTGAACGCCCACTCGTTGCGCAGCCTGAAGGACGCCGTGCAGTATTGCAGCGAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCTgg                                                                                                  >  7:168468/1‑149 (MQ=255)                                                  tttACCACCCCCGAGCTGAACGCCCACTCGTTGCGCAGCCTGAAGGACGCCGTGCAGTATTGCAGCGAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCTgg                                                                                                  >  2:127302/1‑148 (MQ=255)                                                    tACCACCCCCGAGCTGAACGCCCACTCGTTGCGCAGCCTGAAGGACGCCGTGCAGTATTGCAGCGAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCTGGTa                                                                                                <  3:30409/148‑1 (MQ=255)                                                       caccCCCGAGCTGAACGCCCACTCGTTGCGCAGCCTGAAGGATGCCGTGCAGTATTGCAGCGAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATc                                                                                                                           >  1:196019/1‑118 (MQ=255)                                                       caccCCCGAGCTGAACGCCCACTCGTTGCGCAGCCTGAAGGATGCCGTGCAGTATTGCAGCGAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATc                                                                                                                           <  2:196019/118‑1 (MQ=255)                                                       caccCCCGAGCTGAACGCCCACTCGTTGCGCAGCCTGAAGGACGCCGTGCAGTATTGCAGCGAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCTGGTAGAcc                                                                                            >  1:199972/1‑149 (MQ=255)                                                        accCCCGAGCTGAACGCCCACTCGTTGCGCAGCCTGAAGGACGCCGTGCAGTATTGCAGCGAAGGTATTTCCACCAGCCGCACCTTCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCAGGTAGAcca                                                                                           <  7:169774/149‑2 (MQ=255)                                                            ccGAGCTGAACGCCCACTCGTTGCGCAGCCTGAAGGACGCCGTGCAGTATTGCAGCGAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCTGGTAGACCGCGt                                                                                        >  3:127501/1‑148 (MQ=255)                                                              gAGCTGAACGCCCACTCGTTGCGCAGCCTGAAGGACGCCGTGCAGTATTGCAGCGAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCTGGTAGACCGCGTCAc                                                                                     <  1:127302/149‑1 (MQ=255)                                                                 cTGAACGCCCACTCGTTGCGCAGCCTGAAGGACGCCGTGCAGTATTGCAGCGAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCTGGTAGACCGCGTCACCCg                                                                                  >  3:81925/1‑149 (MQ=255)                                                                   gAACGCCCACTCGTTGCGCAGCCTGAAGGACGCCGTGCAGTATTGCAGCGAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCTGGTAGACCGCGTCACCCGGc                                                                                >  7:47864/1‑149 (MQ=255)                                                                        cccACTCGTTGCGCAGCCTGAAGGACGCCGTGCAGTATTGCAGCGAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCTGGTAGACCGCGTCACCCGGCCACGc                                                                           <  3:216313/149‑1 (MQ=255)                                                                         ccACTCGTTGCGCAGCCTGAAGGACGCCGTGCAGTATTGCAGCGAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCTGGTAGACCGCGTCACCCGGCCACg                                                                            >  1:14407/1‑147 (MQ=255)                                                                           tacgcagcgctccccacctatatcaacgcgttagaggctgcgtggccgggtgacgcggtctaccaggtagaccAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGt                                                                                                          <  1:103006‑M1/42‑1 (MQ=255)                                                                           tacgcagcgctccccacctatatcaacgcgttagaggctgcgtggccgggtgacgcggtctaccaggtagaccAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGt                                                                                                          >  2:103006‑M1/74‑115 (MQ=255)                                                                           aCTCGTTGCGCAGCCTGAAGGACGCCGTGCAGTATTGCAGCGAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCTGGTAGACCGCGTCACCCGGCCACGCAGc                                                                        <  1:262549/149‑1 (MQ=255)                                                                           aCTCGTTGCGCAGCCTGAAGGACGCCGTGCAGTATTGCAGCGAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCTGGTAGACCGCGTCACCCGGCCACGCAGc                                                                        <  8:47864/149‑1 (MQ=255)                                                                             tCGTTGCGCAGCCTGAAGGACGCCGTGCAGTATTGCAGCGAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCTGGTAGACCGCGTCACCCGGCCACGCAGCct                                                                      >  5:152376/1‑149 (MQ=255)                                                                                  gcgcAGCCTGAAGGACGCCGTGCAGTATTGCAGCGAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCTGGTAGACCGCGTCACCCGGCCACGCAGCCTCTAAc                                                                 >  8:163276/1‑149 (MQ=255)                                                                                    gcAGCCTGAAGGACGCCGTGCAGTATTGCAGCGAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCTGGTAGACCGCGTCACCCGGCCACGCAGCCTCTAAcgc                                                               >  8:210191/1‑149 (MQ=255)                                                                                         cTGAAGGACGCCGTGCAGTATTGCAGCGAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCTGGTAGACCGCGTCACCCGGCCACGCAGCCTCTAACGCGTTGa                                                          >  4:215427/1‑149 (MQ=255)                                                                                          tGAAGGACGCCGTGCAGTATTGCAGCGAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCAACAGCGTCATCGACTACCACGGCCTGGTCTACCTGGTAGACCGCGTCACCCGGCAACGCAGCCTCTAACGCGTTGa                                                          >  8:125327/1‑148 (MQ=255)                                                                                            aaGGCCGCCGTGCAGTATTGCAGCGAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCTGGTAGACCGCGTCACCCGGCCACGCAGCCTCTAACGCGTTGata                                                        >  8:128558/1‑148 (MQ=255)                                                                                            aaGGACGCCGTGCAGTATTGCAGCGAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCTGGTAGACCGCGTCACCCGGCCACGCAGCCTCTAACGCGTTGata                                                        >  8:144349/1‑148 (MQ=255)                                                                                             aGGACGCCGTGCAGTATTGCAGCGAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCTGGTAGACCGCGTCACCCGGCCACGCAGCCTCTAACGCGTTGAtata                                                      <  3:215427/149‑1 (MQ=255)                                                                                                   ccGTGCAGTATTGCAGCGAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCTGGTAGACCGCGTCACCCGGCCACGCAGCCTCTAACGCGTTGATATAGGTggg                                                <  6:152376/149‑1 (MQ=255)                                                                                                   ccGTGCAGTATTGCAGCGAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCTGGTAGACCGCGTCACCCGGCCACGCAGCCTCTAACGCGTTGATATAGGTggg                                                <  7:163276/149‑1 (MQ=255)                                                                                                         aGTATTGCAGCTAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCTGGTAGACCGCGTCACCCGGCCACGCAGCCTCTAACGCGTTGATATAGGTGGGGAgcgc                                          <  3:194699/149‑1 (MQ=255)                                                                                                             ttGCTGCGAATGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCTGGTAGACCGCGTCACCCGGCCACGCAGCCTCTAACGCGTTGATATAGGTGGGGAGCGCTGCg                                      <  6:6566/149‑1 (MQ=255)                                                                                                               gCAGCGAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCTGGTAGACCGCGTCACCCGGCCACGCAGCCTCTAACGCGTTGATATAGGTGGGGAGCGCTGCGt                                     <  4:127501/148‑1 (MQ=255)                                                                                                                  gCGAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCTGGTAGACCGCGTCACCCGGCCACGCAGCCTCTAACGCGTTGATATAGGTGGGGAGCGCTGCGTAGGa                                 <  1:47744/149‑1 (MQ=255)                                                                                                                    gAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCTGGTAGACCGCGTCACCCGGCCACGCAGCCTCTAACGCGTTGATATAGGTGGGGAGCGCTGCGTAGGa                                 <  1:104957/147‑1 (MQ=255)                                                                                                                    gAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCTGGTAGACCGCGTCACCCGGCCACGCAGCCTCTAACGCGTTGATATAGGTGGGGAGCGCTGCGTAGGa                                 >  2:104957/1‑147 (MQ=255)                                                                                                                    gAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCTGGTAGACCGCGTCACCCGGCCACGCAGCCTCTAACGCGTTGATATAGGTGGGGAGCGCTGCGTAGGAGc                               <  7:210191/149‑1 (MQ=255)                                                                                                                       ggTATTTCCTCCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCTGGTAGACCGCGTCACCCGGCCACGCAGCCTCTAACGCGTTGATATAGGTGGGGAGCGCTGCGTAGGAGCggg                            <  2:199972/149‑1 (MQ=255)                                                                                                                       ggTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCTGGTAGACCGCGTCACCCGGCCACGCAGCCTCTAACGCGTTGATATAGGTGGGGAGCGCTGCGTAGGAGCggg                            <  5:265055/149‑1 (MQ=255)                                                                                                                           tttCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCTGGTAGACCGCGTCACCCGGCCACGCAGCCTCTAACGCGTTGATATAGGTGGGGAGCGCTGCGTAGGAGCGGGttt                         <  4:81925/148‑1 (MQ=255)                                                                                                                               caccaGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCt                                                                                                    <  2:4981/69‑1 (MQ=255)                                                                                                                               caccaGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCt                                                                                                    >  1:4981/1‑69 (MQ=255)                                                                                                                               caccaGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCTGGTAGACCGCGTCACCCGGCCACGCAGCCTCTAACGCGTTGATATAGGTGGGGAGCGCTGCGTAGGAGCGGGTTTAccc                     <  8:123947/148‑1 (MQ=255)                                                                                                                                accaGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCTGGTAGACCGCGTCACCCGGCCACGCAGCCTCTAACGCGTTGATATAGGTGGGGAGCGCTGCGTAGGAGCGGGTTTACCcgc                   >  1:11244/1‑149 (MQ=255)                                                                                                                                      cGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCTGGTAGACCGCGTCACCCGGCCACGCAGCCTCTAACGCGTTGATATAGGTGGGGAGCGCTGCGTAGGAGCGGGTTTACCCGCGAagag             <  5:261454/149‑1 (MQ=255)                                                                                                                                                agaTAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCTGGTAGACCGCGTCACCCGGCCACGCAGCCTCTAACGCGTTGATATAGGTGGGGAGCGCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTCctg   >  1:4891/1‑149 (MQ=255)                                                                                                                                                 gaTAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCTGGTAGACCGCGTCACCCGGCCACGCAGCCTCTAACGCGTTGATATAGGTGGGGAGCGCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTCctgc  >  8:86515/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                  GGTGATCCCGGAAGGTATTCATTGCTGCGGGTTTGCCGGTGACAAAGGCTTTACCACCCCCGAGCTGAACGCCCACTCGTTGCGCAGCCTGAAGGACGCCGTGCAGTATTGCAGCGAAGGTATTTCCACCAGCCGCACCTGCGAGATAGGCCTGTCGAGCCACAGCGGCATCGACTACCACGGCCTGGTCTACCTGGTAGACCGCGTCACCCGGCCACGCAGCCTCTAACGCGTTGATATAGGTGGGGAGCGCTGCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTCCTGC  >  NC_002947/5389073‑5389365

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.