New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5452442 =	38 (0.900)	3 (0.070)	3/246	NT	7.3%	coding (973/1518 nt)	lnt	apolipoprotein N‑acyltransferase
	?	NC_002947	5452471 =	40 (0.990)					coding (1002/1518 nt)	lnt	apolipoprotein N‑acyltransferase

AAGGACCAGGCCCAGGGCTACATCGACGTGATGGGCCGCTTCGCCGCCGAGCGCCACTCGGCGCTGATCACGGGCGTGCCGGTGCGTGAAGAAGTGCACCACCAGCGCCGCTACTACAACGGCATCACCGTCACTGGCGAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCGGAAGACCAGCCGCTGCTGCAGGCCAAGGG  >  NC_002947/5452295‑5452587                                                                                                                                                    |                                                                                                                                                  aaGGACCAGGCCCAGGGCTACATCGACGTGATGGGCCGCTTCGCCGCCGAGCGCCACTCGGCGCTGATCACGGGCGTGCCGGTGCGTGAAGAAGTGCACCACCAGCGCCGCTACTACAACGGCATCACCGTCACTGGCGAAGGCGACgg                                                                                                                                                  >  3:213356/1‑149 (MQ=255) aaGGACCAGGCCCAGGGCTACATCGACGTGATGGGCCGCTTCGCCGCCGAGCGCCACTCGGCGCTGATCACGGGCGTGCCGGTGCGTGAAGAAGTGCACCACCAGCGCCGCTACTACAACGGCATCACCGTCACTGGCGAAGGCGACgg                                                                                                                                                  >  7:142686/1‑149 (MQ=255)   gtagcagctgtaaggggcaatctggtagcccttggcctgcagcagcggctggtcttccggaccgcgggcgaagtcggacatgggcaggttgaagaactcgatggccccacgcagcacgtcttgcagcggcacatactcgccaaatgg                                                                                                                                                  >  8:138258‑M1/146‑147 (MQ=255)    tagcagatgtaaggggcaatctggtagcccttggcctgcagcagcggctggtcttccggaccgcgggcgaagtcggacatgggcaggttgaagaactcgatggccccacgcagcacgtcttgcagcggcacatactcgccaaatGGCac                                                                                                                                               >  3:162847‑M1/145‑149 (MQ=255)      gcagatgtaaggggcaatctggtagcccttggcctgcagcagcggctggtcttccggaccgcgggcgaagtcggacatgggcaggttgaagaactcgatggccccacgcagcacgtcttgcagcggcacatactcgccaaatGGCac                                                                                                                                               <  2:200215‑M1/5‑1 (MQ=255)      ccAGGCCCAGGGCTACATCGACGTGATGGGCCGCTTCGCCGCCGAGCGCCACTCGGCGCTGATCACGGGCGTGCCGGAGCGTGAAGAAGTGCACCACCAGCGCCGCTACTACAACGGCATCACCGTCACTGGCGAAGGCGACGGCacc                                                                                                                                              >  1:85419/1‑148 (MQ=255)        aGGCCCAGGGCTACATCGACGTGATGGGCCGCTTCGCCGCCGAGCGCCACTCGGCGCTGATCACGGGCGTGCCGGTGCGTGAAGAAGTGCACCACCAGCGCCGCTACTACAACGGCATCACCGTCACTGGCGAAGGCGACGGCacctac                                                                                                                                           <  5:42040/149‑1 (MQ=255)         ggCCCAGGGCTACATCGACGTGATGGGCCGCTTCGCCGCCGAGCGCCACTCGGCGCTGATCACGGGCGTGCCGGTGCGTGAAGAAGTGCACCACCAGCGCCGCTACTACAACGGCATCACCGTCACTGGCGAAGGCGACGGCacctacc                                                                                                                                          <  1:226666/149‑1 (MQ=255)             cAGGGCTACATCGACGTGATGGGCCGCTTCGCCGCCGAGCGCCACTCGGCGCTGATCACGGGCGTGCCGGTGCGTGAAGAAGTGCACCACCAGCGCCGCTACTACAACGGCATCACCGTCACTGGCGAAGGCGACGGCACCTACCTCaa                                                                                                                                      <  4:7440/149‑1 (MQ=255)              aGGGCTACATCGACGTGATGGGCCGCTTCGCCGCCGAGCGCCACTCGGCGCTGATCACGGGCGTGCCGGTGCGTGAAGAAGTGCACCACCAGCGCCGCTACTACAACGGCATCACCGTCACTGGCGAAGGCGACGGCACCTACCTCAAg                                                                                                                                     <  6:175757/149‑1 (MQ=255)                         gACGTGATGGGCCGCTTCGCCGCCGAGCGCCACTCGGCGCTGATCACGGGCGTGCCGGTGCGTGAAGAAGTGCACCACCAGCGCCGCTACTACAACGGCATCACCGTCACTGGCGAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGt                                                                                                                          <  2:85419/149‑1 (MQ=255)                                   gCCGCTTCGCCGCCGAGCGCCACTCGGCGCTGATCACGGGCGTGCCGGTGCGTGAAGAAGTGCACCACCAGCGCCGCTACTACAACGGCATCACCGTCACTGGCGAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGc                                                                                                                <  4:213356/149‑1 (MQ=255)                                     gcctgcagcagcggctggtcttccggaccgcgggcgaagtcggacatgggcaggttgaagaactcgatggccccacgcagcacgtcttgcagcggcacatactcgccaaatGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGa                                                                                                              >  6:64034‑M1/112‑149 (MQ=255)                                     cGCTTCGCCGCCGAGCGCCACTCGGCGCTGATCACGGGCGTGCCGGTGCGTGAAGAAGTGCACCACCAGCGCCGCTACTACAACGGCATCACCGTCACTGGCGAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGa                                                                                                              <  7:23255/149‑1 (MQ=255)                                       cTTCGCCGCCGAGCGCCACTCGGCGCTGATCACGGGCGTGCCGGTGCGTGAAGAAGTGCACCACCAGCGCCGCTACTACAACGGCATCACCGTCACTGGCGAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGt                                                                                                            <  5:133580/149‑1 (MQ=255)                                                    ggcgacgcGGCGCGGATCTCGGGCGTGCCGGTGCGTGAAGAAGTGCACCACCAGCGCCGCTACTACAACGGCATCACCGTCACTGGCGAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGc                                                                                                <  6:189181/141‑1 (MQ=255)                                                      ccACTCGGCGCTGATCACGGGCGTGCCGGTGCGTGAAGAAGTGCACCACCAGCGCCGCTACTACAACGGCATCACCGTCACTGGCGAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCAGTTGGCGAGTATGTGCCGCTGc                                                                                                >  1:216197/1‑146 (MQ=255)                                                       tcttccggaccgcgggcgaagtcggacatgggcaggttgaagaactcgatggccccacgcagcacgtcttgcagcggcacatactcgccaaatGGCACCTACCTCAAGCAGAAGCTGGTGCCAtt                                                                                                                    >  7:127705‑M1/94‑125 (MQ=255)                                                       tcttccggaccgcgggcgaagtcggacatgggcaggttgaagaactcgatggccccacgcagcacgtcttgcagcggcacatactcgccaaatGGCACCTACCTCAAGCAGAAGCTGGTGCCAtt                                                                                                                    <  8:127705‑M1/32‑1 (MQ=255)                                                                      aCGGGCGTGCCGGTGCGTGAAGACGTGCACCACCAGCGCCGCTACTACAACGGCATCACCGTCACTGGCGAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTgggg                                                                              <  3:176683/148‑1 (MQ=255)                                                                         ggCGTGCCGGTGCGTGAAGAAGTGCACCACCAGCGCCGCTACTACAACGGCATCACCGTCACTGGCGAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCAt                                                                          <  7:162047/149‑1 (MQ=255)                                                                                 ggTGCGTGAAGAAGTGCACCACCAGCGCCGCTACTACAACGGCATCACCGTCACTGGCGAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGttct                                                                  <  4:244580/149‑1 (MQ=255)                                                                                     cGTGAAGAAGTGCACCACCAGCGCCGCTACTACAACGGCATCACCGTCACTGGCTAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCaa                                                              <  8:142686/149‑1 (MQ=255)                                                                                       tGAAGAAGTGCACCACCAGCGCCGCTACTACAACGGCATCACCGTCACTGGCGATGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATAGAGTTCTTCAAcc                                                            >  5:219563/1‑149 (MQ=255)                                                                                       tGAAGAAGTGCACCACCAGCGCCGCTACTACAACGGCATCACCGTCACTGGCGAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAAcc                                                            >  4:146925/1‑149 (MQ=255)                                                                                       tGAAGAAGTGCACCACCAGCGCCGCTACTACAACGGCATCACCGTCACTGGCGAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAAcc                                                            >  7:209134/1‑149 (MQ=255)                                                                                        gaagaaGTGCACCACCAGCGCCGCTACTACAACGGCATCACCGTCACTGGCGAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCt                                                           >  6:120104/1‑149 (MQ=255)                                                                                            tgaagaactcgatggccccacgcagcacgtcttgcagcggcacatactcgccaaatGGCac                                                                                                                                               >  5:12690‑M1/57‑61 (MQ=255)                                                                                            tgaagaactcgatggccccacgcagcacgtcttgcagcggcacatactcgccaaatGGCac                                                                                                                                               <  6:12690‑M1/5‑1 (MQ=255)                                                                                               tGCACCACCAGCGCCGCTACTACAACGGCATCACCGTCACTGGCGAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATg                                                    >  2:233685/1‑149 (MQ=255)                                                                                                  accaccAGCGCCGCTACTACAACGGCATCACCGTCACTGGCGAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTcc                                                 >  7:133022/1‑149 (MQ=255)                                                                                                    caccaGCGCCGCTACTACAACGGCATCACCGTCACTGGCGAAGGCGACGGCACCTACCTCAAGCAAAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGa                                               >  4:121401/1‑149 (MQ=255)                                                                                                         gcgcCGCTACTACAACGGCATCACCGTCACTGGCGAAGGCGACGGCACCTACCTCAAGCAGAGGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCg                                          >  8:7530/1‑149 (MQ=255)                                                                                                                     cAACGGCATCACCGTCACTGGCGAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTcc                                <  1:233685/147‑1 (MQ=255)                                                                                                                     cAACGGCATCACCGTCACTGGCGAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCg                               <  5:206971/148‑1 (MQ=255)                                                                                                                     cAACGGCATCACCGTCACTGGCGAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCg                               >  8:221820/1‑148 (MQ=255)                                                                                                                      aaCGGCATCACCGTCACTGGCGAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCgg                              >  1:41743/1‑148 (MQ=255)                                                                                                                       aCGGCATCACCGTCACTGGCGAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCGGaa                            <  5:120104/149‑1 (MQ=255)                                                                                                                           cATCACCGTCACTGGCGAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTCCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCGGaa                            <  6:54186/145‑1 (MQ=255)                                                                                                                           cATCACCGTCACTGGCGAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTCCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCGGaa                            >  5:54186/1‑145 (MQ=255)                                                                                                                                  gTCACTGGCGAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCGGAAGACCAGCCgct                 >  6:205394/1‑149 (MQ=255)                                                                                                                                  gTCACTGGCGAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCGGAAGACCAGCCgct                 <  7:221820/149‑1 (MQ=255)                                                                                                                                    cACTGGCGAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCGGAAGACCAGCCgctgc               >  1:93960/1‑149 (MQ=255)                                                                                                                                     aCTGGCGAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTTCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCGGAAGACCAGCCgctgct              <  6:219563/149‑1 (MQ=255)                                                                                                                                         gCGAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCGGAAGCCCAGCCGCTGCTGCAg          >  5:223420/1‑149 (MQ=255)                                                                                                                                         gCGAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCGGAAGACCAGCCGCTGCTGCAg          <  8:209134/149‑1 (MQ=255)                                                                                                                                           gAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCGGAAGACCAGCCgct                 <  6:163889/140‑1 (MQ=255)                                                                                                                                           gAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCGGAAGACCAGCCgct                 >  5:163889/1‑140 (MQ=255)                                                                                                                                                 gACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCGGAAGACCAGCCGCTGCTGCAGGCCAAggg  >  1:200215/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                  AAGGACCAGGCCCAGGGCTACATCGACGTGATGGGCCGCTTCGCCGCCGAGCGCCACTCGGCGCTGATCACGGGCGTGCCGGTGCGTGAAGAAGTGCACCACCAGCGCCGCTACTACAACGGCATCACCGTCACTGGCGAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCGGAAGACCAGCCGCTGCTGCAGGCCAAGGG  >  NC_002947/5452295‑5452587

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.