New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5452442 =	38 (0.900)	3 (0.070)	3/246	NT	7.3%	coding (973/1518 nt)	lnt	apolipoprotein N‑acyltransferase
	?	NC_002947	5452471 =	40 (0.990)					coding (1002/1518 nt)	lnt	apolipoprotein N‑acyltransferase

GCCGCTTCGCCGCCGAGCGCCACTCGGCGCTGATCACGGGCGTGCCGGTGCGTGAAGAAGTGCACCACCAGCGCCGCTACTACAACGGCATCACCGTCACTGGCGAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCGGAAGACCAGCCGCTGCTGCAGGCCAAGGGCTACCAGATTGCCCCTTACATCTGCTAC  >  NC_002947/5452329‑5452615                                                                                                                                               |                                                                                                                                                 gCCGCTTCGCCGCCGAGCGCCACTCGGCGCTGATCACGGGCGTGCCGGTGCGTGAAGAAGTGCACCACCAGCGCCGCTACTACAACGGCATCACCGTCACTGGCGAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGc                                                                                                                                            <  4:213356/149‑1 (MQ=255)   gcctgcagcagcggctggtcttccggaccgcgggcgaagtcggacatgggcaggttgaagaactcgatggccccacgcagcacgtcttgcagcggcacatactcgccaaatGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGa                                                                                                                                          >  6:64034‑M1/112‑149 (MQ=255)   cGCTTCGCCGCCGAGCGCCACTCGGCGCTGATCACGGGCGTGCCGGTGCGTGAAGAAGTGCACCACCAGCGCCGCTACTACAACGGCATCACCGTCACTGGCGAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGa                                                                                                                                          <  7:23255/149‑1 (MQ=255)     cTTCGCCGCCGAGCGCCACTCGGCGCTGATCACGGGCGTGCCGGTGCGTGAAGAAGTGCACCACCAGCGCCGCTACTACAACGGCATCACCGTCACTGGCGAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGt                                                                                                                                        <  5:133580/149‑1 (MQ=255)                  ggcgacgcGGCGCGGATCTCGGGCGTGCCGGTGCGTGAAGAAGTGCACCACCAGCGCCGCTACTACAACGGCATCACCGTCACTGGCGAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGc                                                                                                                            <  6:189181/141‑1 (MQ=255)                    ccACTCGGCGCTGATCACGGGCGTGCCGGTGCGTGAAGAAGTGCACCACCAGCGCCGCTACTACAACGGCATCACCGTCACTGGCGAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCAGTTGGCGAGTATGTGCCGCTGc                                                                                                                            >  1:216197/1‑146 (MQ=255)                     tcttccggaccgcgggcgaagtcggacatgggcaggttgaagaactcgatggccccacgcagcacgtcttgcagcggcacatactcgccaaatGGCACCTACCTCAAGCAGAAGCTGGTGCCAtt                                                                                                                                                <  8:127705‑M1/32‑1 (MQ=255)                     tcttccggaccgcgggcgaagtcggacatgggcaggttgaagaactcgatggccccacgcagcacgtcttgcagcggcacatactcgccaaatGGCACCTACCTCAAGCAGAAGCTGGTGCCAtt                                                                                                                                                >  7:127705‑M1/94‑125 (MQ=255)                                    aCGGGCGTGCCGGTGCGTGAAGACGTGCACCACCAGCGCCGCTACTACAACGGCATCACCGTCACTGGCGAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTgggg                                                                                                          <  3:176683/148‑1 (MQ=255)                                       ggCGTGCCGGTGCGTGAAGAAGTGCACCACCAGCGCCGCTACTACAACGGCATCACCGTCACTGGCGAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCAt                                                                                                      <  7:162047/149‑1 (MQ=255)                                               ggTGCGTGAAGAAGTGCACCACCAGCGCCGCTACTACAACGGCATCACCGTCACTGGCGAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGttct                                                                                              <  4:244580/149‑1 (MQ=255)                                                   cGTGAAGAAGTGCACCACCAGCGCCGCTACTACAACGGCATCACCGTCACTGGCTAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCaa                                                                                          <  8:142686/149‑1 (MQ=255)                                                     tGAAGAAGTGCACCACCAGCGCCGCTACTACAACGGCATCACCGTCACTGGCGATGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATAGAGTTCTTCAAcc                                                                                        >  5:219563/1‑149 (MQ=255)                                                     tGAAGAAGTGCACCACCAGCGCCGCTACTACAACGGCATCACCGTCACTGGCGAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAAcc                                                                                        >  7:209134/1‑149 (MQ=255)                                                     tGAAGAAGTGCACCACCAGCGCCGCTACTACAACGGCATCACCGTCACTGGCGAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAAcc                                                                                        >  4:146925/1‑149 (MQ=255)                                                      gaagaaGTGCACCACCAGCGCCGCTACTACAACGGCATCACCGTCACTGGCGAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCt                                                                                       >  6:120104/1‑149 (MQ=255)                                                             tGCACCACCAGCGCCGCTACTACAACGGCATCACCGTCACTGGCGAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATg                                                                                >  2:233685/1‑149 (MQ=255)                                                                accaccAGCGCCGCTACTACAACGGCATCACCGTCACTGGCGAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTcc                                                                             >  7:133022/1‑149 (MQ=255)                                                                  caccaGCGCCGCTACTACAACGGCATCACCGTCACTGGCGAAGGCGACGGCACCTACCTCAAGCAAAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGa                                                                           >  4:121401/1‑149 (MQ=255)                                                                       gcgcCGCTACTACAACGGCATCACCGTCACTGGCGAAGGCGACGGCACCTACCTCAAGCAGAGGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCg                                                                      >  8:7530/1‑149 (MQ=255)                                                                                   cAACGGCATCACCGTCACTGGCGAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTcc                                                            <  1:233685/147‑1 (MQ=255)                                                                                   cAACGGCATCACCGTCACTGGCGAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCg                                                           >  8:221820/1‑148 (MQ=255)                                                                                   cAACGGCATCACCGTCACTGGCGAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCg                                                           <  5:206971/148‑1 (MQ=255)                                                                                    aaCGGCATCACCGTCACTGGCGAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCgg                                                          >  1:41743/1‑148 (MQ=255)                                                                                     aCGGCATCACCGTCACTGGCGAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCGGaa                                                        <  5:120104/149‑1 (MQ=255)                                                                                         cATCACCGTCACTGGCGAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTCCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCGGaa                                                        >  5:54186/1‑145 (MQ=255)                                                                                         cATCACCGTCACTGGCGAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTCCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCGGaa                                                        <  6:54186/145‑1 (MQ=255)                                                                                                gTCACTGGCGAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCGGAAGACCAGCCgct                                             >  6:205394/1‑149 (MQ=255)                                                                                                gTCACTGGCGAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCGGAAGACCAGCCgct                                             <  7:221820/149‑1 (MQ=255)                                                                                                  cACTGGCGAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCGGAAGACCAGCCgctgc                                           >  1:93960/1‑149 (MQ=255)                                                                                                   aCTGGCGAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTTCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCGGAAGACCAGCCgctgct                                          <  6:219563/149‑1 (MQ=255)                                                                                                       gCGAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCGGAAGCCCAGCCGCTGCTGCAg                                      >  5:223420/1‑149 (MQ=255)                                                                                                       gCGAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCGGAAGACCAGCCGCTGCTGCAg                                      <  8:209134/149‑1 (MQ=255)                                                                                                         tcgccaaatggcaccagcttctgcttgaggtaggtgccATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCGGAAGACCAGCCGCTGCTGCAGGc                                    >  6:64034‑M2/39‑149 (MQ=255)                                                                                                         gAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCGGAAGACCAGCCgct                                             <  6:163889/140‑1 (MQ=255)                                                                                                         gAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCGGAAGACCAGCCgct                                             >  5:163889/1‑140 (MQ=255)                                                                                                               gACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCGGAAGACCAGCCGCTGCTGCAGGCCAAggg                              >  1:200215/1‑149 (MQ=255)                                                                                                               aatggcaccagcttctgcttgaggtaggtgccATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCGGAAGa                                                      >  7:127705‑M2/33‑125 (MQ=255)                                                                                                               aatggcaccagcttctgcttgaggtaggtgccATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCGGAAGa                                                      <  8:127705‑M2/93‑1 (MQ=255)                                                                                                                   GCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCGGAAGACCAGCCGCTGCTGCAGGCCAAGGGCTAc                          >  3:146925‑M1/1‑149 (MQ=255)                                                                                                                            tCAAGCAGAAGCAGCTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGCCCATCGACTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCGGAAGACCAGCCGCTGCTGCAGGCCAAGGGCTACCAGATAGcc                 >  8:145538/1‑149 (MQ=255)                                                                                                                             cAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCGGAAGACCAGCAGCTGCTGCAGGCCAAGGGCTACCAGATTGccc                >  5:21872/1‑149 (MQ=255)                                                                                                                              aaGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCGGAAGACCAGCCGCTGCTGCAGGCCAAGGGCTACCAGATTGccc                <  2:93960/148‑1 (MQ=255)                                                                                                                               aGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCGGAAGACCAGCCGCTGCTGCAGGCCAAGGGCTACCAGATTGCCCCt              <  5:205394/149‑1 (MQ=255)                                                                                                                                gCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCGGAAGACCAGCCGCTGCTGCAGGCCAAGGGCTACCAGATTGCCCCt              >  8:193213/1‑148 (MQ=255)                                                                                                                                gCAGAAGCTGGTGCCATTTGGCGAGTATCTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTACAACCTGCCCATGTCCGACTTCGCCCGCGGTCCGGAAGACCAGCCGCTGCTGCAGGCCAAGGGCTACCAGATTGCCCCtt             <  5:205732/149‑1 (MQ=255)                                                                                                                                  agagGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCGGAAGACCAGCCGCTGCTGCAGGCCAAGGGCTACCAGATTGCCCCTTAc           <  7:7530/149‑1 (MQ=255)                                                                                                                                      gCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCGGAAGACCAGCCGCTGCTGCAGGCCAAGGGCTACCAGATTGCCCCTTACATCt       <  6:4492/149‑1 (MQ=255)                                                                                                                                          gtgccATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCa                                                                                           >  5:12690‑M2/6‑61 (MQ=255)                                                                                                                                          gtgccATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCa                                                                                           <  6:12690‑M2/56‑1 (MQ=255)                                                                                                                                          gtgccATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCGGAAGACCAGCCGCTGCTGCAGGCCAAGGGCTACCAGATTGCCCCTTACATCTGc     <  2:200215‑M2/142‑1 (MQ=255)                                                                                                                                          gtgccATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCGGAAGACCAGCCGCTGCTGCAGGCCAAGGGCTACCAGATTGCCCCTTACATCTGCTa   >  3:162847‑M2/6‑149 (MQ=255)                                                                                                                                             ccATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCGGAAGACCAGCCGCTGCTGCAGGCCAAGGGCTACCAGATTGCCCCTTACAGCTGCTAc  >  8:138258‑M2/3‑147 (MQ=255)                                                                                                                                               aTTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCGGAAGACCAGCCGCTGCTGCAGGCCAAGGGCTACCAGATTGc                  >  2:100945/1‑129 (MQ=255)                                                                                                                                               aTTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCGGAAGACCAGCCGCTGCTGCAGGCCAAGGGCTACCAGATTGc                  <  1:100945/129‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                 GCCGCTTCGCCGCCGAGCGCCACTCGGCGCTGATCACGGGCGTGCCGGTGCGTGAAGAAGTGCACCACCAGCGCCGCTACTACAACGGCATCACCGTCACTGGCGAAGGCGACGGCACCTACCTCAAGCAGAAGCTGGTGCCATTTGGCGAGTATGTGCCGCTGCAAGACGTGCTGCGTGGGGCCATCGAGTTCTTCAACCTGCCCATGTCCGACTTCGCCCGCGGTCCGGAAGACCAGCCGCTGCTGCAGGCCAAGGGCTACCAGATTGCCCCTTACATCTGCTAC  >  NC_002947/5452329‑5452615

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.