New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5630729 =	38 (0.900)	3 (0.070)	3/250	NT	7.8%	coding (259/3954 nt)	putA	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase
	?	NC_002947	5630773 =	34 (0.830)					coding (303/3954 nt)	putA	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase

TCAATTACCTGGAGAAGCTCGAGGGTGGTGCCACCCTGACCGAACTCAACGGTCATGCCAGCAACCCGGCCGACGATGCCGGTGAAGTCCAGGCCGACCACAGCCACCAGTGCTTCCTCGAATTTGCCGAGAGCATCTTGCCGCAGTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTGGCCGACGCCACCAACAAGCTGGCCGCAAGCATTGCCGAAAAACTGCG  >  NC_002947/5630583‑5630871                                                                                                                                                   |                                                                                                                                                    tCAATTACCTGGAGAAGCTCGAGGGTGGTGCCACCCTGACCGAACTCAACGGTCATGCCAGCAACCCGGCCGACGATGCCGGTGAAGTCCAGGCCGACCACAGCCACCAGTGCTTCCTCGAATTTGCCGAGAGCATCTTGCCGCAGTCg                                                                                                                                                   >  3:227195/1‑149 (MQ=255)            gagaAGCTCGAGGGTGGTGCCACCCTGACCGAACTCAACGGTCATGCCAGCAACCCGGCCGACGATGCCGGTGAAGTCCAGGCCGACCACAGCCACCAGTGCTTCCTCGAATTTGCCGAGAGCATCTTGCCGCAGTCGGTACTGCGCTc                                                                                                                                        >  7:103499/1‑149 (MQ=255)              gaAGCTCGAGGGTGGTGCCACCCTGACCGAACTTAACGGTCATGCCAGCAACCCGGCCGACGATGCCGGTGAAGTCCAGGCCGACCACAGCCACCAGTGCTTCCTCGAATTTGCCGAGAGCATCTTGCCGCAGTCGGTACTGCGCTCgg                                                                                                                                      >  4:92616/1‑149 (MQ=255)                    cGAGGGTGGTGCCACCCTGACCGAACTCAACGGTCATGCCAGCAACCCGGCCGACGATGCCGGTGAAGTCCAGGCCGACCACAGCCACCAGTGCTTCCTCGAATTTGCCGAGAGCATCTTGCCGCAGTCGGTACTGCGCTCGGCGATCa                                                                                                                                >  4:96306/1‑149 (MQ=255)                     gAGGGTGGTGCCACCCTGACCGAACTCAACGGTCATGCCAGCAACCCGGCCGACGATGCCGGTGAAGTCCAGGCCGACCACAGCCACCAGTGCTTCCTCGAATTTGCCGAGAGCATCTTGCCGCAGTCGGTACTGCGCTCGGCGATc                                                                                                                                 <  7:79109/147‑1 (MQ=255)                      aGGGTGGTGCCACCCTGACCGAACTCAACGGTCATGCCAGCAACCCGGCCGACGATGCCGGTGAAGTCCAGGCCGACCACAGCCACCAGGGCTTCCTCGAATTTGCCGAGAGCATCTTGCCGCAGTCGGTACTGCGCTCGGCGATCAcc                                                                                                                              <  8:18593/149‑1 (MQ=255)                       gggTGGTGCCACCCTGACCGAACTCAACGGTCATGCCAGCAACCCGGCCGACGATGCCGGTGAAGTCCAGGCCGACCACAGCCACCAGTGCTTCCTCGAATTTGCCGAGAGCATCTTGCCGCAGTCGGTACTGCGCTCGGCGATCAccg                                                                                                                             >  7:164442/1‑149 (MQ=255)                            gtgCCACCCTGACCGAACTCAACGGTCTTGCCAGCAACGCGGCCGACGATGCCGGTGAAGTCCAGGCCGACCACAGCCACCAGTGCTTCCTCGAATTTGCCGAGAGCATCTTGCCGCAGTCGGTACTGCGCTCGGCGATCACcgccgc                                                                                                                         <  2:14863/148‑1 (MQ=255)                            gtgCCACCCTGACCGAACTCAACGGTCATGCCAGCAACCCGGCCGACGATGCCGGTGAAGTCCAGGCCGACCACAGCCACCAGTGCTTCCTCGAATATGCCGAGAGCATCTTGCCGCAGTCGGTACTGCGCTCGGCGATCACCgccgcc                                                                                                                        <  3:96306/149‑1 (MQ=255)                                cACCCTGACCGAACTCAACGGTCATGCCAGCAACCCGGCCGACGATGCCGGTGAAGTCCACGCCGACCACAGCCACCAGTGCTTCCTCGAATTTGCCGATAGCATCTTGCCGCAGTCGGTACTGCGCTCGGCGATCACCGCCGCCTAcc                                                                                                                    <  2:115654/149‑1 (MQ=255)                                 aCCCTGACCGAACTCAACGGTCATGCCAGCAACCCGGCCGACGATGCCGGTGAAGTCCAGGCCGACCACAGCCACCAGTGCTTCCTCGAATTTGCCGAGAGCATCTTGCCGCAGTCGGTACTGCGCTCGGCGATCACCGCCGCCTAccg                                                                                                                   <  4:227195/149‑1 (MQ=255)                                       aCCGAACTCAACGGTCATGCCAGCAACCCGGCCGACGATGCCGGTGAAGTCCAGGCCGACCACAGCCCCCAGTGCTTCCTCGAATTTGCCGAGAGCATCTTGCCGCAGTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGccc                                                                                                             >  4:122388/1‑149 (MQ=255)                                       aCCGAACTCAACGGTCATGCCAGCAACCCGGCCGACGATGCCGGTGAAGTCCAGGCCGACCACAGCCACCAGTGCTTCCTCGAATTTGCCGAGAGCATCTTGCCGCAGTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCgccgcc                                                                                                              <  8:36504/148‑1 (MQ=255)                                        ccGAACTCAACGGTCATGCCAGCAACCCGGCCGACGATGCCGGTGAAGTCCAGGCCGACCACAGCCACCAGTGCTTCCTCGAATTTGCCGAGAGCATCTTGCCGCAGTCGGTACTg                                                                                                                                             <  4:48785/116‑1 (MQ=255)                                        ccGAACTCAACGGTCATGCCAGCAACCCGGCCGACGATGCCGGTGAAGTCCAGGCCGACCACAGCCACCAGTGCTTCCTCGAATTTGCCGAGAGCATCTTGCCGCAGTCGGTACTg                                                                                                                                             >  3:48785/1‑116 (MQ=255)                                            gttgcgcagtttttcggcaatgcttgcggccagcttgttggtggcgtcggccagcggcgcgctcaggcgcgcctgctccagcagcatcggcaccacttcctgcTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑g                                                                                                        >  1:14642‑M1/104‑148 (MQ=255)                                                           cAGCAACCCGGCCGACGATGCCGGTGAAGTCCAGGCCGACCACAGCCACCAGTGCTTCCTCGAATTTGCCGAGAGCATCTTGCCGCAGTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGa                                                                                    >  7:172490/1‑149 (MQ=255)                                                           cAGCAACCCGGCCGACGATGCCGGTGAAGTCCAGGCCGACCACAGCCACCAGTGCTTCCTCGAATTTGCCGAGAGCATCTTGCCGCAGTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGa                                                                                    <  8:164442/149‑1 (MQ=255)                                                                 cccGGCCGACGATGCCGGTGAAGTCCAGGCCGACCACAGCCACCAGTGCTTCCTCGAATTTGCCGAGAGCATCTTGCCGCAGTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGAtgctgc                                                                              <  5:92862/149‑1 (MQ=255)                                                                     gCCGACGATGCCGGTGAAGTCCAGGCCGACCACAGCCACCAGTGCTTCCTCGAATTTGCCGAGAGCATCTTGCCGCAGTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGATGCTGCTGGa                                                                          <  8:103499/149‑1 (MQ=255)                                                                                    gAAGTCCAGGCCGACCACAGCCACCAGTGTTTCCTCGAATTTGCCGAGAGCATCTTGCCGCAGTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGATGCTGCTGGAGCAGGCGCGCCTGAg                                                           >  1:157041/1‑149 (MQ=255)                                                                                     aaGTCCAGGCCGACCACAGCCACCAGTGCTTCCTCGAATTTGCCGAGAGCATCTTGCCGCAGTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGATGCTGCTGGAGCAGGCGCGCCTGAgc                                                          >  5:40681/1‑149 (MQ=255)                                                                                          cAGGCCGACCACAGCCACCAGTGCTTCCTCGAATTTGCCGAGAGCATCTTGCCGCAGTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGATGCTGCTGGAGCAGGCGCGCCTGAGCGcgcc                                                     >  3:46041/1‑149 (MQ=255)                                                                                             gCCGACCACAGCCACCAGTGCTTCCTCGAATTTGCCGAGAGCATCTTGCCGCAGTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGAtgctg                                                                               >  4:181597/1‑120 (MQ=255)                                                                                             gCCGACCACAGCCACCAGTGCTTCCTCGAATTTGCCGAGAGCATCTTGCCGCAGTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGAtgctg                                                                               <  3:181597/120‑1 (MQ=255)                                                                                              ccGACCACAGCCACCAGTGCTTCCTCGAATTTGCCGAGAGCATCTTGCCGCAGTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTg                                                 <  2:216635/149‑1 (MQ=255)                                                                                              ccGACCACAGCCACCAGTGCTTCCTCGAATTTGCCGAGAGCATCTTGCCGCAGTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTg                                                 >  7:25366/1‑149 (MQ=255)                                                                                                    acaGCCACCAGTGCTTCCTCGAATTTGCCGAGAGCATCTTGCCGCAGTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTGGCCGAc                                           >  1:246754/1‑149 (MQ=255)                                                                                                        ccaccaGTGCTTCCTCGAATTTGCCGAGAGCATCTTGCCGCAGTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGATGCTGCTGGAGCTGGCGGGCCTGAGCGCGCCGCTGGCCGACGcca                                       <  8:172490/149‑1 (MQ=255)                                                                                                        ccaccaGTGCTTCCTCGAATTTGCCGAGAGCATCTTGCCGCAGTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTGGCCGACGcca                                       >  1:171685/1‑149 (MQ=255)                                                                                                        ccaccaGTGCTTCCTCGAATTTGCCGAGAGCATCTTGCCGCAGTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTGGCCGACGcca                                       >  1:68039/1‑149 (MQ=255)                                                                                                          tcaggcgcgcctgctccagcagcatcggcaccacttcctgcTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑g                                                                                                    <  8:94501‑M1/48‑1 (MQ=255)                                                                                                          tcaggcgcgcctgctccagcagcatcggcaccacttcctgcTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑g                                                                                                    >  7:94501‑M1/42‑89 (MQ=255)                                                                                                                      tCGAATTTGCCGAGAGCATCTTGCCGCAGTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGATGGAGGGAAATTGTGAGAGCGATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTGGCCGACGCCACCAACAAGc                              >  1:83759/1‑149 (MQ=255)                                                                                                                      tCGAATTTGCCGAGAGCATCTTGCCGCAGTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGATGCTGCTGGAGCAGGCGCGCCTGAGCGcgccg                                                    <  3:152689/122‑1 (MQ=255)                                                                                                                      tCGAATTTGCCGAGAGCATCTTGCCGCAGTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGATGCTGCTGGAGCAGGCGCGCCTGAGCGcgccg                                                    >  4:152689/1‑122 (MQ=255)                                                                                                                          aTTTGCCGAGAGCATCTTGCCGCAGTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTGGCCGACGCCACCAACAAGCTGGCCGc                       >  7:147600/1‑147 (MQ=255)                                                                                                                                 gagaGCATCTTGCCGCAGTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTGGCCGACGCCACCAACAAGCTGGCCGCAAGCATTGc              >  3:155812/1‑149 (MQ=255)                                                                                                                                            gCCGCAGTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTGGCCGACGCCACCAACAAGCTGGCCGCAAGCATTGCCGAAAAACt     <  2:171685/147‑1 (MQ=255)                                                                                                                                            gCCGCAGTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTGGCCGACGCCACCAACAAGCTGGCCGCAAGCATTGCCGAAAAACt     <  2:68039/147‑1 (MQ=255)                                                                                                                                             ccGCAGTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTGGCCGACGCCACCAACAAGCTGGCCGCAAGCATTGCCGAAAAACTgcg  <  8:147600/149‑1 (MQ=255)                                                                                                                                             ccGCAGTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTGGCCGACGCCACCAACAAGCTGGCCGCAAGCATTGCCGAAAAACTgc   <  2:3934/148‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                    TCAATTACCTGGAGAAGCTCGAGGGTGGTGCCACCCTGACCGAACTCAACGGTCATGCCAGCAACCCGGCCGACGATGCCGGTGAAGTCCAGGCCGACCACAGCCACCAGTGCTTCCTCGAATTTGCCGAGAGCATCTTGCCGCAGTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTGGCCGACGCCACCAACAAGCTGGCCGCAAGCATTGCCGAAAAACTGCG  >  NC_002947/5630583‑5630871

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.