New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5630729 =	38 (0.900)	3 (0.070)	3/250	NT	7.8%	coding (259/3954 nt)	putA	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase
	?	NC_002947	5630773 =	34 (0.830)					coding (303/3954 nt)	putA	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase

ACTCAACGGTCATGCCAGCAACCCGGCCGACGATGCCGGTGAAGTCCAGGCCGACCACAGCCACCAGTGCTTCCTCGAATTTGCCGAGAGCATCTTGCCGCAGTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTGGCCGACGCCACCAACAAGCTGGCCGCAAGCATTGCCGAAAAACTGCGCAACCAGAAAAGCGTCGGCGGCCGTGCCGGTATCGTCCAGGGCC  >  NC_002947/5630626‑5630915                                                                                                                                                     |                                                                                                                                                   gttgcgcagtttttcggcaatgcttgcggccagcttgttggtggcgtcggccagcggcgcgctcaggcgcgcctgctccagcagcatcggcaccacttcctgcTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑g                                                                                                                                                    >  1:14642‑M1/104‑148 (MQ=255)                cAGCAACCCGGCCGACGATGCCGGTGAAGTCCAGGCCGACCACAGCCACCAGTGCTTCCTCGAATTTGCCGAGAGCATCTTGCCGCAGTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGa                                                                                                                                >  7:172490/1‑149 (MQ=255)                cAGCAACCCGGCCGACGATGCCGGTGAAGTCCAGGCCGACCACAGCCACCAGTGCTTCCTCGAATTTGCCGAGAGCATCTTGCCGCAGTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGa                                                                                                                                <  8:164442/149‑1 (MQ=255)                      cccGGCCGACGATGCCGGTGAAGTCCAGGCCGACCACAGCCACCAGTGCTTCCTCGAATTTGCCGAGAGCATCTTGCCGCAGTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGAtgctgc                                                                                                                          <  5:92862/149‑1 (MQ=255)                          gCCGACGATGCCGGTGAAGTCCAGGCCGACCACAGCCACCAGTGCTTCCTCGAATTTGCCGAGAGCATCTTGCCGCAGTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGATGCTGCTGGa                                                                                                                      <  8:103499/149‑1 (MQ=255)                                         gAAGTCCAGGCCGACCACAGCCACCAGTGTTTCCTCGAATTTGCCGAGAGCATCTTGCCGCAGTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGATGCTGCTGGAGCAGGCGCGCCTGAg                                                                                                       >  1:157041/1‑149 (MQ=255)                                          aaGTCCAGGCCGACCACAGCCACCAGTGCTTCCTCGAATTTGCCGAGAGCATCTTGCCGCAGTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGATGCTGCTGGAGCAGGCGCGCCTGAgc                                                                                                      >  5:40681/1‑149 (MQ=255)                                               cAGGCCGACCACAGCCACCAGTGCTTCCTCGAATTTGCCGAGAGCATCTTGCCGCAGTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGATGCTGCTGGAGCAGGCGCGCCTGAGCGcgcc                                                                                                 >  3:46041/1‑149 (MQ=255)                                                  gCCGACCACAGCCACCAGTGCTTCCTCGAATTTGCCGAGAGCATCTTGCCGCAGTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGAtgctg                                                                                                                           >  4:181597/1‑120 (MQ=255)                                                  gCCGACCACAGCCACCAGTGCTTCCTCGAATTTGCCGAGAGCATCTTGCCGCAGTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGAtgctg                                                                                                                           <  3:181597/120‑1 (MQ=255)                                                   ccGACCACAGCCACCAGTGCTTCCTCGAATTTGCCGAGAGCATCTTGCCGCAGTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTg                                                                                             >  7:25366/1‑149 (MQ=255)                                                   ccGACCACAGCCACCAGTGCTTCCTCGAATTTGCCGAGAGCATCTTGCCGCAGTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTg                                                                                             <  2:216635/149‑1 (MQ=255)                                                         acaGCCACCAGTGCTTCCTCGAATTTGCCGAGAGCATCTTGCCGCAGTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTGGCCGAc                                                                                       >  1:246754/1‑149 (MQ=255)                                                             ccaccaGTGCTTCCTCGAATTTGCCGAGAGCATCTTGCCGCAGTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGATGCTGCTGGAGCTGGCGGGCCTGAGCGCGCCGCTGGCCGACGcca                                                                                   <  8:172490/149‑1 (MQ=255)                                                             ccaccaGTGCTTCCTCGAATTTGCCGAGAGCATCTTGCCGCAGTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTGGCCGACGcca                                                                                   >  1:68039/1‑149 (MQ=255)                                                             ccaccaGTGCTTCCTCGAATTTGCCGAGAGCATCTTGCCGCAGTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTGGCCGACGcca                                                                                   >  1:171685/1‑149 (MQ=255)                                                               tcaggcgcgcctgctccagcagcatcggcaccacttcctgcTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑g                                                                                                                                                <  8:94501‑M1/48‑1 (MQ=255)                                                               tcaggcgcgcctgctccagcagcatcggcaccacttcctgcTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑g                                                                                                                                                >  7:94501‑M1/42‑89 (MQ=255)                                                                           tCGAATTTGCCGAGAGCATCTTGCCGCAGTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGATGGAGGGAAATTGTGAGAGCGATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTGGCCGACGCCACCAACAAGc                                                                          >  1:83759/1‑149 (MQ=255)                                                                           tCGAATTTGCCGAGAGCATCTTGCCGCAGTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGATGCTGCTGGAGCAGGCGCGCCTGAGCGcgccg                                                                                                <  3:152689/122‑1 (MQ=255)                                                                           tCGAATTTGCCGAGAGCATCTTGCCGCAGTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGATGCTGCTGGAGCAGGCGCGCCTGAGCGcgccg                                                                                                >  4:152689/1‑122 (MQ=255)                                                                               aTTTGCCGAGAGCATCTTGCCGCAGTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTGGCCGACGCCACCAACAAGCTGGCCGc                                                                   >  7:147600/1‑147 (MQ=255)                                                                                      gagaGCATCTTGCCGCAGTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTGGCCGACGCCACCAACAAGCTGGCCGCAAGCATTGc                                                          >  3:155812/1‑149 (MQ=255)                                                                                                 gCCGCAGTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTGGCCGACGCCACCAACAAGCTGGCCGCAAGCATTGCCGAAAAACt                                                 <  2:68039/147‑1 (MQ=255)                                                                                                 gCCGCAGTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTGGCCGACGCCACCAACAAGCTGGCCGCAAGCATTGCCGAAAAACt                                                 <  2:171685/147‑1 (MQ=255)                                                                                                  ccGCAGTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTGGCCGACGCCACCAACAAGCTGGCCGCAAGCATTGCCGAAAAACTgcg                                              <  8:147600/149‑1 (MQ=255)                                                                                                  ccGCAGTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTGGCCGACGCCACCAACAAGCTGGCCGCAAGCATTGCCGAAAAACTgc                                               <  2:3934/148‑1 (MQ=255)                                                                                                     ctgctcggggcggcggtaggcggcggtgatcgccgagcgcagtaccgaGCA‑GGAAGTGGTG‑‑‑CCGATGCTGCTGGAGCAGGCGCGCCTGa                                                                                                        >  7:94501‑M2/49‑89 (MQ=255)                                                                                                     ctgctcggggcggcggtaggcggcggtgatcgccgagcgcagtaccgaGCA‑GGAAGTGGTG‑‑‑CCGATGCTGCTGGAGCAGGCGCGCCTGa                                                                                                        <  8:94501‑M2/41‑1 (MQ=255)                                                                                                        ctcggggcggcggtaggcggcggtgatcgccgagcgcagtaccgaGCA‑GGAAGTGGTG‑‑‑CCGATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTGGCCGACGCCACCAACAAGCTGGCCGCAAGCATTGCCGAAAAACTGCGCAAc                                          >  1:14642‑M2/46‑148 (MQ=255)                                                                                                             aCTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTGGCCGACGCCACCAACAAGCTGGCCGCAAGCATTGCCGAAAAACTgcgc                                             <  7:250001/139‑1 (MQ=255)                                                                                                             aCTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTGGCCGACGCCACCAACAAGCTGGCCGCAAGCATTGCCGAAAAACTgcgc                                             >  8:250001/1‑139 (MQ=255)                                                                                                               tGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTGGCCGACGCCACCAACAAGCTGGCCGCAAGCATTGCCGAAAAACTGCGCAACCAGAAAAg                                  >  8:108595/1‑148 (MQ=255)                                                                                                                      ggCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTGGCCGACGCCACCAACAAGCTGGCCGCAAGCATTGCCGAAAAACTGCGCAACCAGAAAAGCGTcggc                           <  2:246754/148‑1 (MQ=255)                                                                                                                       gCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTGGCCGACGCCACCAACAAGCTGGCCGCAAGCATTGCCGAAAAACTGCGCAACCAGAAAAGCGTcggcgg                         >  7:217970/1‑149 (MQ=255)                                                                                                                            cACCGCCGCCTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTGGCCGACGCCACCAACAAGCTGGCCGCAAGCATTGCCGAAAAACTGCGCAACCAg                                       >  7:202950/1‑130 (MQ=255)                                                                                                                              ccgccgCCTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTGGCCGACGCCACCAACAAGCTGGCCGCAAGCATTGCCGAAAAACTGCGCAACCAGAAAAGCGTCGGCGGCCGTGcc                  >  1:233454/1‑149 (MQ=255)                                                                                                                                 ccgccTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑ACGCTGCTGCTGGAGCCGGCGCGCCTGAGCGCGCCGCTGGCCGACGCCCCCCACAAGCTGGCCGCCAGCATTGCCGAAAAACGGCGCCACCAGACAAGCGTCGGCGGCCGTGCCgg                >  1:165570/1‑148 (MQ=255)                                                                                                                                  cgccTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTGGCCGACGCCACCAACAAGCTGGCCGCAAGCATTGCCGAAAAACTGCGCAACCAGAAAAGCGTCGGCGGCCGTGCCGGTa              <  7:108595/149‑1 (MQ=255)                                                                                                                                        ccgccgCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTGGCCGACGCCACCAACAAGCTGGCCGCAAGCATTGCCGAAAAACTGCGCAACCAGAAAAGCGTCGGCGGCCGTGCCGGTATCGTc         >  6:162384/1‑148 (MQ=255)                                                                                                                                              ccccGA‑GCA‑GGAAGTGGTG‑‑‑CCGATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTGGCCGACGCCACCAACAAGCTGGCCGCAAGCATTGCCGAAAAACTGCGCAACCAGAAAAGCGTCGGCGGCCGTGCCGGTATCGTCCAGGGcc  >  8:24156/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                   ACTCAACGGTCATGCCAGCAACCCGGCCGACGATGCCGGTGAAGTCCAGGCCGACCACAGCCACCAGTGCTTCCTCGAATTTGCCGAGAGCATCTTGCCGCAGTCGGTACTGCGCTCGGCGATCACCGCCGCCTACCGCCGCCCCGA‑GCA‑GGAAGTGGTG‑‑‑CCGATGCTGCTGGAGCAGGCGCGCCTGAGCGCGCCGCTGGCCGACGCCACCAACAAGCTGGCCGCAAGCATTGCCGAAAAACTGCGCAACCAGAAAAGCGTCGGCGGCCGTGCCGGTATCGTCCAGGGCC  >  NC_002947/5630626‑5630915

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.