New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5760360 =	45 (1.070)	4 (0.100)	4/246	NT	9.6%	coding (382/414 nt)	PP_5055	Sulfurtransferase
	?	NC_002947	5760404 =	32 (0.800)					coding (338/414 nt)	PP_5055	Sulfurtransferase

CGGCTTGCCGTCGACCTTGATTTCCTCGAAGGCCACGCCCTTGCTCTCGAGCAGGTACTTGGCGCGCATGCAGTAGGGGCAGTAGTCGCTGGAGTAGACGATGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGAGCAGCTCGCGGCAAATGGTGCCGGACTGCTGGCCCATCGCGTCGACGACGATCAAGGTCTTTTCTTTATGCTTGCCCAGCTCGGTCATGCGGTTGGC  >  NC_002947/5760213‑5760504                                                                                                                                                    |                                                                                                                                                 cGGCTTGCCGTCGACCTTGATTTCCTCGAAGGCCACGCCCTTGCTCTCGAGCAGGTACTTGGCGCGCATGCAGTAGGGGCAGTAGTCGCTGGAGTAGACGATGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCa                                                                                                                                                  <  6:171178/148‑1 (MQ=255)     ggtcatatcgtcggcgcggtgaacatcccgcaggacaagctggccaaccgcatgaccgagctgggcaagcataaagaaaagaccttgatcgtcgtcgacgcgatgggccagcagtccggcaccatttgccgcgagctgctcaaAGCTgg                                                                                                                                             >  4:123306‑M1/144‑149 (MQ=255)             gACCTTGATTTCCTCGAAGGCCACGCCCTTGCTCTCGAGCAGGTACTTGGCGCGCATGCAGTAGGGGCAGTAGTCTCTGGAGTAGACGATGACAGGCTTCATATCACTTCACAAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCa                                                                                                                                     >  1:14437/1‑149 (MQ=255)                     tttCCTCGAAGGCCACGCCCTTGCTCTCGAGCAGGTACTTGGCGCGCATGCAGTAGGGGCAGTAGTCGCTGGAGTAGACGATGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAg                                                                                                                             <  6:11367/149‑1 (MQ=255)                         cTCGAAGGCCACGCCCTTGCTCTCGAGCAGGTACTTGGCGCGCATGCAGTAGGGGCAGTAGTCGCTGGAGTAGACGATGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTg                                                                                                                         >  4:33246/1‑149 (MQ=255)                          tCGAAGGCCACGCCCTTGCTCTCGAGCAGGTACTTGGCGCGCATGCAGTAGGGGCAGTAGTCGCTGGAGTAGACGATGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGCCTTTCAAGATGGAAACGCCACCGCTCAGTTTgg                                                                                                                        >  3:156342/1‑149 (MQ=255)                            gAAGGCCACGCCCTTGCTCTCGAGCAGGTACTTGGCGCGCATGCAGTAGGGGCAGTAGTCGCTGGAGTAGACGATGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTgg                                                                                                                        <  7:68934/147‑1 (MQ=255)                                 cgcaggacaagctggccaaccgcatgaccgagctgggcaagcataaagaaaagaccttgatcgtcgtcgacgcgatgggccagcagtccggcaccatttgccgcgagctgctcaaAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGtt                                                                                                                 <  6:37991‑M1/34‑1 (MQ=255)                                 ccACGCCCTTGCTCTCGAGCAGGTACTTGGCGCGCATGCAGTAGGGGCAGTAGTCGCTGGAGTAGACGATGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGtt                                                                                                                 >  4:142707/1‑149 (MQ=255)                                 ccACGCCCTTGCTCTCGAGCAGGTACTTGGCGCGCATGCAGTAGGGGCAGTAGTCGCTGGAGTAGACGATGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGtt                                                                                                                 <  7:105253/149‑1 (MQ=255)                                  cACGCCCTTGCTCTCGAGCAGGTACTTGGCGCGCATGCAGTAGGGGCAGTAGTCGCTGGAGTAGACGATGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTg                                                                                                                         <  8:117530/140‑1 (MQ=255)                                  cACGCCCTTGCTCTCGAGCAGGTACTTGGCGCGCATGCAGTAGGGGCAGTAGTCGCTGGAGTAGACGATGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTg                                                                                                                         >  7:117530/1‑140 (MQ=255)                                    cGCCATTGCTCTCGAGCATGTAGTTGGAGAGCATGTTGTATGGGGTGTTGTGGCTGTTGTAGTATTTTACAGGCTTAATATCACTTCACGAGGTGGAGGTTATCGGCTTTCCAGCTGTAAACTCAACAGCTCAGTTTGGCGTCGtt                                                                                                                 <  4:156342/146‑1 (MQ=255)                                       ccTTGCTCTCGAGCAGGTACTTGGCGCGCATGCAGTAGGGGCAGTAGTCGCTGGAGTAGACGATGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAAc                                                                                                            >  7:57295/1‑148 (MQ=255)                                           gCTCTCGAGCAGGTACTTGGCGCGCATGCAGTAGGGGCAGTAGTCGCTGGAGTAGACGATGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCt                                                                                                       >  2:254197/1‑149 (MQ=255)                                            ctctCGAGCAGGTACTTGGCGCGCATGCAGTAGGGGCAGTAGTCGCTGGAGTAGACGATGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCt                                                                                                       <  3:142707/148‑1 (MQ=255)                                             tctcGAGCAGGTACTTGGCGCGCATGCAGTAGGGGCAGTAGTCGCTGGAGTAGACGATGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCttt                                                                                                     >  7:235103/1‑149 (MQ=255)                                               tcGAGCAGGTACTTGGCGCGCATGCAGTAGGGGCAGTAGTCGCTGGAGTAGACGATGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCAc                                                                                                                                    >  2:216444/1‑116 (MQ=255)                                               tcGAGCAGGTACTTGGCGCGCATGCAGTAGGGGCAGTAGTCGCTGGAGTAGACGATGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCAc                                                                                                                                    <  1:216444/116‑1 (MQ=255)                                               gccaaccgcatgaccgagctgggcaagcataaagaaaagaccttgatcgtcgtcgacgcgatgggccagcagtccggcaccatttgccgcgagctgctcaaAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGa                                                                                                   >  5:37991‑M1/102‑149 (MQ=255)                                                 gAGCAGGTACTTGGCGCGCATGCAGTAGGGGCAGTAGTCGCTGGAGTAGACGATGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGa                                                                                                   <  7:50479/147‑1 (MQ=255)                                                  aGCATGTACTTGGCGCGCATGCAGTAGGGGCAGTAGTCGCTGGAGTAGACGATGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGagca                                                                                                <  7:87743/149‑1 (MQ=255)                                                       gTACTTGGCGCGCATGCAGTAGGGGCAGTAGTCTCTGGAGTAGACGATGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGag                                                                                                  >  1:8769/1‑142 (MQ=255)                                                       gTACTTGGCGCGCATGCAGTAGGGGCAGTAGTCGCTGGAGTAGACGATGACAGGCTTCATATCACTTCAGCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGag                                                                                                  <  2:8769/142‑1 (MQ=255)                                                          cTTGGCGCGCATGCAGTAGGGGCAGTAGTCGCTGGAGTAGACGATGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGAGCAGCTcgcg                                                                                         <  6:10907/148‑1 (MQ=255)                                                           ttGGCGCGCATGCAGTAGGGGCAGTAGTCGCTGGAGTAGACGATGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTgg                                                                                                                        <  1:124430/116‑1 (MQ=255)                                                           ttGGCGCGCATGCAGTAGGGGCAGTAGTCGCTGGAGTAGACGATGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTgg                                                                                                                        >  2:124430/1‑116 (MQ=255)                                                              gagctgggcaagcataaagaaaagaccttgatcgtcgtcgacgcgatgggccagcagtccggcaccatttgccgcgagctgctcaaAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCt                                                                                                       <  8:228914‑M1/44‑1 (MQ=255)                                                              gagctgggcaagcataaagaaaagaccttgatcgtcgtcgacgcgatgggccagcagtccggcaccatttgccgcgagctgctcaaAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCt                                                                                                       >  7:228914‑M1/87‑130 (MQ=255)                                                               cgcgcATGCAGTAGGGGCAGTAGTCGCTGGAGTAGACGATGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGAGCAGCTCGCGGCAAAt                                                                                   <  8:57295/149‑1 (MQ=255)                                                                      gCAGTAGGGGCAGTAGTCGCTGGAGTAGACGATGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTa                                                                                                              <  3:139362/115‑1 (MQ=255)                                                                      gCAGTAGGGGCAGTAGTCGCTGGAGTAGACGATGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTa                                                                                                              >  4:139362/1‑115 (MQ=255)                                                                       cAGTACGGGCAGTAGTCGCTGGAGTAGACGATGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGAGCAGCTCGCGGCAAATGGTGCCg                                                                            <  7:231210/148‑1 (MQ=255)                                                                              ggCAGTAGTCGCTGGAGTAGACGATGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGAGCAGCTCGCGGCAAATGGTGCCGGActgctg                                                                    >  1:192579/1‑149 (MQ=255)                                                                              ggCAGTAGTCGCTGGAGTAGACGATGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGAGCAGCTCGCGGCAAATGGTGCCGGActgctg                                                                    <  1:254197/149‑1 (MQ=255)                                                                               gCAGTAGTCGCTGGAGTAGACGATGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGAGCAGCTCGCGGCAAATGGTGCCGGACTGCTgg                                                                   >  4:2109/1‑149 (MQ=255)                                                                                    agtCGCTGGAGTAGACGATGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGAGCAGCTCGCGGCAAATGGTGCCGGACTGCTGACCCAt                                                              >  7:214440/1‑149 (MQ=255)                                                                                     gtCGCTGGAGTAGACGATGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGAGCAGCTCGCGGCAAATGGTGCCGGACTGCTGGCCCATc                                                             <  1:10361/149‑1 (MQ=255)                                                                                               tAGACGATGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCt                                                                                                       >  4:149259/1‑97 (MQ=255)                                                                                               tAGACGATGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCt                                                                                                       <  3:149259/97‑1 (MQ=255)                                                                                               tAGACGATGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGAGCAGCTCGCGGCAAATGGTGCCGGACTGCTGGCCCATCGCGTcgacga                                                   <  8:235103/149‑1 (MQ=255)                                                                                                 gACGATGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGAGCAGCTCGCGGCAAATGGTGCCGGACTGCTGGCCCATCGCGTcgacgac                                                  >  2:99574/1‑148 (MQ=255)                                                                                                         cAGTCTTCATATGAGTTCACGAGGGGCAGGTTATCGGCTTTCCAGCTGGAAAAGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGAGCAGCTCGCGGCAAATGGTGCCGGACTGCTGGCCCATCGCGTCGACGACGATCAAGGt                                         <  8:228401/149‑1 (MQ=255)                                                                                                                  tatCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGAGCAGCTCGCGGCAAATGGTGCCGGACTGCTGGCCCATCGCGTCGACGACGATCAAGGtcttttcttt                                <  3:33246/149‑1 (MQ=255)                                                                                                                     cACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGAGCAGCTCGCGGCAAATGGTGCCGGACTGCTGGCCCATCGCGTCGACGACGATCAAGGTCTTTTCTTTATg                             >  2:269362/1‑149 (MQ=255)                                                                                                                      aCTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGTGCAGCTAGCGGCAAATGGTGCCGGACTGCTGGCCCATCGCGTCGACGACGATCAAGGTCTTTTCTTTATGc                            >  1:86491/1‑149 (MQ=255)                                                                                                                      aCTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGAGCAGCTCGCGGCAAATGGTGCCGGACTGCTGGCCCATCGCGTCGACGACGATCAAGGTCTTTTCTTTATGc                            <  1:99574/149‑1 (MQ=255)                                                                                                                           aCCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGTGTTGTAACCAGCTTTGAGCAGCTCGCGGCAAATGGTGCCGGACTGCTGGCCCATCGCGTCGACGACGATCAAGGTCTTTTCTTTATGCTTGcc                       >  2:6992/1‑149 (MQ=255)                                                                                                                                    aGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGAGCAGCTCGCGGCAAAt                                                                                   <  1:78820/80‑1 (MQ=255)                                                                                                                                    aGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGAGCAGCTCGCGGCAAAt                                                                                   >  2:78820/1‑80 (MQ=255)                                                                                                                                              cTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGAGCAGCTCGCGGCAAATGGTGCCGGACTGCTGGCCCATCGCGTCGACGACGATCAAGGTCTTTTCTTTATGCTTGCCCAGCTCGGTCATGCGGTTg    <  2:14437/149‑1 (MQ=255)                                                                                                                                               tttCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGAGCAGCTCGCGGCAAATGGTGCCGGACTGCTGGCCCATCGCGTCGACGACGATCAAGGTCTTTTCTTTATGCTTGCCCAGCTCGGTCATGAGGTTgg   >  8:161350/1‑149 (MQ=255)                                                                                                                                                 tCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGAGCAGCTCGCGGCAAATGGTGCCGGACTGCTGGCCCATCGCGTCGACGACGATCAAGGTCTTTTCTTTATGCTTGCCCAGCTCGGTCATGCGGTTGGc  >  2:268134/1‑148 (MQ=255)                                                                                                                                                   cAGCTGGATACGCCACCGCTCAGTTTTGCGGCGTTGTAACCAGCTTTGAGCAGCTCGCGGCAAATGGTGCCGGACTGCTGGCCCATCGCGTCGACGACGATCAAGGTCTTTTCTTTATGCTTGCCCAGCt                  <  5:198748/130‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                 CGGCTTGCCGTCGACCTTGATTTCCTCGAAGGCCACGCCCTTGCTCTCGAGCAGGTACTTGGCGCGCATGCAGTAGGGGCAGTAGTCGCTGGAGTAGACGATGACAGGCTTCATATCACTTCACCAGGGGCAGGTTATCGGCTTTCCAGCTGGAAACGCCACCGCTCAGTTTGGCGGCGTTGTAACCAGCTTTGAGCAGCTCGCGGCAAATGGTGCCGGACTGCTGGCCCATCGCGTCGACGACGATCAAGGTCTTTTCTTTATGCTTGCCCAGCTCGGTCATGCGGTTGGC  >  NC_002947/5760213‑5760504

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.