| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5870289 | 17 (0.400) | 4 (0.120) | 4/200 | NT | 18.5% | intergenic (+50/+84) | PP_5144/ptsP | hypothetical protein/phosphoenolpyruvate‑dependent regulator |
| ? | NC_002947 | = 5870324 | 22 (0.670) | intergenic (+85/+49) | PP_5144/ptsP | hypothetical protein/phosphoenolpyruvate‑dependent regulator | |||||
AGTGCTGATTGTGGATGATCAGGGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTG‑TTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCA‑ACCCCAGATGTGTGTACGTGGTAGGAGCGGGTTCACCC‑GCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCA > NC_002947/5870143‑5870434 | aGTGCTGATTGTGGATGATCAGGGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTG‑TTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACaa > 6:107914/1‑149 (MQ=255) tCAGGGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTG‑TTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCA‑Accc < 2:216544/148‑1 (MQ=255) gggCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTG‑TTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCA‑ACCCCAGAt < 5:107914/149‑1 (MQ=255) ggCCAAGGCGGCTGGTTTTGCGCATTTTCGGGCCTTTTTGCGGGCATTTGGGGGAAATTTATTTTTTTGTCTGATTATTTGATGTTGTGTGTTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCA‑ACCCCAGAt < 1:73567/149‑1 (MQ=25) gCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTG‑TTCGGGCCTCTTCGCGGGTGGAACCCCTCCTACAAAGGGCTGGGTGCA‑ACCCCAGAtgt > 7:38878/1‑149 (MQ=255) gCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTG‑TTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCA‑ACCCCAGAtgt > 2:17556/1‑149 (MQ=255) aaaGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTG‑TTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTGCA‑ACCCCAGCtgtgt > 7:12890/1‑149 (MQ=255) gcggcTGGTTGTGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTG‑TTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCA‑ACCCCAGATGTGTGTAc < 6:137468/149‑1 (MQ=255) ctgttGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTG‑TTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCA‑ACCCCAGATGTGTGTACGTGg > 1:94935‑M2/3‑147 (MQ=255) gTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTG‑TTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACcacgtacacacatctggggttggacccaggccgttgtag > 8:78130‑M1/1‑110 (MQ=255) ttGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTG‑TTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCA‑ACCCCAGATGTGTGTACGTGg < 2:94935‑M2/145‑2 (MQ=255) gAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTG‑TTCGGGCCTCTTCGCGGGTGAACCCGCTCCTAC > 4:252347‑M1/1‑107 (MQ=255) gAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTG‑TTCGGGCCTCTTCGCGGGTGAACCCGCTCCTAC < 3:252347‑M1/107‑1 (MQ=255) aGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTG‑TTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACcacgtacacacatctggggttggacccaggccgttgtaggagc < 7:78130‑M1/149‑44 (MQ=255) cgcAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTG‑TTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCA‑ACCCCAGATGTGTGTACGTGgtaggagcgg > 2:233779‑M2/1‑139 (MQ=255) cAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTG‑TTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCA‑ACCCCAGATGTGTGTACGTGgtaggagcgggt > 1:17556‑M2/1‑137 (MQ=255) ggCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTG‑TTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACcacgtacacacatctggggttggacccaggccgttgtaggagcg > 8:153099‑M1/1‑94 (MQ=255) ggCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTG‑TTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACcacgtacacacatctggggttggacccaggccgttgtaggagcg < 7:153099‑M1/138‑45 (MQ=255) tttattttGTTGTTGTCTG‑TGGGGCCCTCTGCGGGGGTCACCCGGCTCCAAC‑ACCGCCGGGGGCCACCCCCCAGTTGTGTGACGGTGTTCGGCGGGGTTAAACCC‑GCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTtta < 8:12890/143‑1 (MQ=255) tattgtaTGTTGCCTG‑TGCGGCCGTCTTCGCGGGTTAACCCGCTCCTACACCGCCCTGGGCCCA‑ACCCCAGATGTGTGAAGGTGGTCGGAGCGGGTTCACCC‑GCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTttatta < 3:176297/142‑1 (MQ=255) gttgtCTG‑TGCGGCCCTCTGCGCGGGTTAACCCGATCCAACACCGGCGTGGGTCCA‑CCCCCAGATGTGTGTCCGTGGTTGGCGGGGGTACACCC‑GCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAgg < 2:197122/148‑1 (MQ=255) gtCTG‑TTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTgg < 1:35601/48‑1 (MQ=255) gtCTG‑TTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTgg > 2:35601/1‑48 (MQ=255) tgtG‑TTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGCCTGGGTAAA‑ACCCCAGTTGTGTTTACGTGGTAGTTGCGGGTTAACCC‑GCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCaa < 6:126210/147‑1 (MQ=38) ttCGGGCCTCTTCGCGGGTGAACCCCCTCCTACAACGGCCTGGGTCCA‑ACCCCAGATGTGTGTACGTGGTAGGAGCGGGTTCACCC‑GCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAatcat > 7:239793/1‑149 (MQ=255) ggCCTCTTCGCGGGTGAACCCGCTCCAACAACGGCCTGGGTCCA‑ACCCCAGATGTGTGTAAGTGGTAGGAGCGGGGTCCCCC‑GCGAAGAGGCCGGCACAAACAGCCTCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCcgc > 6:221841/1‑149 (MQ=38) aCCCTCTCCTCAAACGGCCTGGGTCCA‑ACCCAATATGTGTGTACGTGGTCGTAGGGGGTTCACCC‑GCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGttctt < 2:157124/149‑1 (MQ=255) aCCCGCTCCTACcacgtacacacatctggggttggacccaggccgttgtaggagcgggttcacccgcgaagaggcccgaacagacaacatcaaatactcagaccaacaactcaatttcccccaaatgcccgccaaaaggcccgaaactg > 1:17556‑M1/1‑12 (MQ=255) cccaatCCTACAACGGCCTGGGTCAA‑ACCCCTGTTGTGTGTCCGTGGTCGCCGCGGTTTCACCC‑GCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGttcttc < 8:239793/144‑1 (MQ=255) ccGCTCCTACcacgtacacacatctggggttggacccaggccgttgtaggagcgggttcacccgcgaagaggcccgaacagacaacatcaaatactcagaccaacaactcaatttcccccaaatgcccgccaaaaggcccgaaactgcg > 2:233779‑M1/1‑10 (MQ=255) cGCTCCTACAACGGCCTGGGTCCA‑ACCCCAGATGTGTGTACGTGgtaggagcgggttcacccgcgaagaggcccgaacagacaacatcaaatactcagaccaacaactcaatttcccccaaatgcccgccaaaaggcc > 8:153099‑M2/1‑44 (MQ=255) cGCTCCTACAACGGCCTGGGTCCA‑ACCCCAGATGTGTGTACGTGgtaggagcgggttcacccgcgaagaggcccgaacagacaacatcaaatactcagaccaacaactcaatttcccccaaatgcccgccaaaaggcc < 7:153099‑M2/138‑95 (MQ=255) gCTCCTACAACGGCCTGGGTCCA‑ACCCCAGATGTGTGTACGTGgtaggagcgggttcacccgcgaagaggcccgaacagacaacatcaaatactcagaccaacaactcaatttcccccaaatgcccgccaaaaggcccgaaactgcgct < 7:78130‑M2/149‑107 (MQ=255) cTACAACGGCCTGGGTCCA‑ACCCCAGATGTGTGTACGTGgtaggagcgggttcacccgcgaagaggcccgaacagacaacatcaaatactcagaccaacaactcaatttcccccaaatgcccgccaaaaggcccgaaactgcgctcaac > 8:78130‑M2/1‑39 (MQ=255) cTACAACGGCCTGGGTCCA‑ACCCCAGATGTGTGTACGTGGTAGGAGCGGGTTCACCCTGCGATGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCAACCCCGCCAACCCAAGGTTGTTCAGGGc > 1:209619/1‑148 (MQ=255) aCAACGGCCTGGGTCCA‑ACCCCAGATGTGTGTACGTGGTAGGAGCGGGTTCACCC‑GCGAAGAGGCCGGCACAAACAGCATCAGCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCcgc < 6:87070/122‑1 (MQ=255) aCAACGGCCTGGGTCCA‑ACCCCAGATGTGTGTACGTGGTAGGAGCGGGTTCACCC‑GCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCcgc > 5:87070/1‑122 (MQ=255) ccacgtacacacatctggggttggacccaggccgttgtaggagcgggttcacccgcgaagaggcccgaacagacaacatcaaatactcagaccaacaactcaatttcccccaaatgcccgccaaaaggcccgaaactgcgctcaacag > 1:94935‑M1/1‑1 (MQ=255) ccacgtacacacatctggggttggacccaggccgttgtaggagcgggttcacccgcgaagaggcccgaacagacaacatcaaatactcagaccaacaactcaatttcccccaaatgcccgccaaaaggcccgaaactgcgctcaa < 2:94935‑M1/145‑145 (MQ=255) | AGTGCTGATTGTGGATGATCAGGGGCAAAGGCGGCTGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTG‑TTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCA‑ACCCCAGATGTGTGTACGTGGTAGGAGCGGGTTCACCC‑GCGAAGAGGCCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCA > NC_002947/5870143‑5870434 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |