| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5870289 | 17 (0.400) | 4 (0.120) | 4/200 | NT | 18.5% | intergenic (+50/+84) | PP_5144/ptsP | hypothetical protein/phosphoenolpyruvate‑dependent regulator |
| ? | NC_002947 | = 5870324 | 22 (0.670) | intergenic (+85/+49) | PP_5144/ptsP | hypothetical protein/phosphoenolpyruvate‑dependent regulator | |||||
TGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCA‑ACCCCAGATGTGTGTACGTGGTAGGAGCGGGTTCACCC‑GCGAAGAGGC‑CGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGG > NC_002947/5870178‑5870472 | ctgttGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCA‑ACCCCAGATGTGTGTACGTGg > 1:94935‑M2/3‑147 (MQ=255) ttGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCA‑ACCCCAGATGTGTGTACGTGg < 2:94935‑M2/145‑2 (MQ=255) cgcAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCA‑ACCCCAGATGTGTGTACGTGgtaggagcgg > 2:233779‑M2/1‑139 (MQ=255) cAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCA‑ACCCCAGATGTGTGTACGTGgtaggagcgggt > 1:17556‑M2/1‑137 (MQ=255) tttattttGTTGTTGTCTGTGGGGCCCTCTGCGGGGGTCACCCGGCTCCAAC‑ACCGCCGGGGGCCACCCCCCAGTTGTGTGACGGTGTTCGGCGGGGTTAAACCC‑GCGAAGAGGC‑CGGCACAAACAGCATCACCCTCACAGGGTTtta < 8:12890/143‑1 (MQ=255) tattgtaTGTTGCCTGTGCGGCCGTCTTCGCGGGTTAACCCGCTCCTACACCGCCCTGGGCCCA‑ACCCCAGATGTGTGAAGGTGGTCGGAGCGGGTTCACCC‑GCGAAGAGGC‑CGGCACAAACAGCATCACCCTCACAGGGTTttatta < 3:176297/142‑1 (MQ=255) gttgtCTGTGCGGCCCTCTGCGCGGGTTAACCCGATCCAACACCGGCGTGGGTCCA‑CCCCCAGATGTGTGTCCGTGGTTGGCGGGGGTACACCC‑GCGAAGAGGC‑CGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAgg < 2:197122/148‑1 (MQ=255) tgtGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGCCTGGGTAAA‑ACCCCAGTTGTGTTTACGTGGTAGTTGCGGGTTAACCC‑GCGAAGAGGC‑CGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCaa < 6:126210/147‑1 (MQ=38) ttCGGGCCTCTTCGCGGGTGAACCCCCTCCTACAACGGCCTGGGTCCA‑ACCCCAGATGTGTGTACGTGGTAGGAGCGGGTTCACCC‑GCGAAGAGGC‑CGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAatcat > 7:239793/1‑149 (MQ=255) ggCCTCTTCGCGGGTGAACCCGCTCCAACAACGGCCTGGGTCCA‑ACCCCAGATGTGTGTAAGTGGTAGGAGCGGGGTCCCCC‑GCGAAGAGGC‑CGGCACAAACAGCCTCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCcgc > 6:221841/1‑149 (MQ=38) aCCCTCTCCTCAAACGGCCTGGGTCCA‑ACCCAATATGTGTGTACGTGGTCGTAGGGGGTTCACCC‑GCGAAGAGGC‑CGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGttctt < 2:157124/149‑1 (MQ=255) cccaatCCTACAACGGCCTGGGTCAA‑ACCCCTGTTGTGTGTCCGTGGTCGCCGCGGTTTCACCC‑GCGAAGAGGC‑CGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGttcttc < 8:239793/144‑1 (MQ=255) cGCTCCTACAACGGCCTGGGTCCA‑ACCCCAGATGTGTGTACGTGgtaggagcgggttcacccgcgaagaggcccgaacagacaacatcaaatactcagaccaacaactcaatttcccccaaatgcccgccaaaaggcc < 7:153099‑M2/138‑95 (MQ=255) cGCTCCTACAACGGCCTGGGTCCA‑ACCCCAGATGTGTGTACGTGgtaggagcgggttcacccgcgaagaggcccgaacagacaacatcaaatactcagaccaacaactcaatttcccccaaatgcccgccaaaaggcc > 8:153099‑M2/1‑44 (MQ=255) gCTCCTACAACGGCCTGGGTCCA‑ACCCCAGATGTGTGTACGTGgtaggagcgggttcacccgcgaagaggcccgaacagacaacatcaaatactcagaccaacaactcaatttcccccaaatgcccgccaaaaggcccgaaactgcgct < 7:78130‑M2/149‑107 (MQ=255) cTACAACGGCCTGGGTCCA‑ACCCCAGATGTGTGTACGTGgtaggagcgggttcacccgcgaagaggcccgaacagacaacatcaaatactcagaccaacaactcaatttcccccaaatgcccgccaaaaggcccgaaactgcgctcaac > 8:78130‑M2/1‑39 (MQ=255) cTACAACGGCCTGGGTCCA‑ACCCCAGATGTGTGTACGTGGTAGGAGCGGGTTCACCCTGCGATGAGGC‑CGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCAACCCCGCCAACCCAAGGTTGTTCAGGGc > 1:209619/1‑148 (MQ=255) aCAACGGCCTGGGTCCA‑ACCCCAGATGTGTGTACGTGGTAGGAGCGGGTTCACCC‑GCGAAGAGGC‑CGGCACAAACAGCATCAGCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCcgc < 6:87070/122‑1 (MQ=255) aCAACGGCCTGGGTCCA‑ACCCCAGATGTGTGTACGTGGTAGGAGCGGGTTCACCC‑GCGAAGAGGC‑CGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCcgc > 5:87070/1‑122 (MQ=255) aaCGGCCTGGGTCCA‑ACCCCAGATGTGTGTACGTGGTAGGAGCGGGTTCACCC‑GCGAAGAGGC‑CGGCACAAACAGCATCACCCTCACAGGGTTttatta > 1:193260/1‑99 (MQ=255) aaCGGCCTGGGTCCA‑ACCCCAGATGTGTGTACGTGGTAGGAGCGGGTTCACCC‑GCGAAGAGGC‑CGGCACAAACAGCATCACCCTCACAGGGTTttatta < 2:193260/99‑1 (MQ=255) tCCA‑ACCCCAGATGTGTGTACGTGGTAGGAGCGGGTTCACCC‑GCGAAGAGGC‑CGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAgg < 3:236418/121‑1 (MQ=255) tCCA‑ACCCCAGATGTGTGTACGTGGTAGGAGCGGGTTCACCC‑GCGAAGAGGC‑CGGCACAAACAGCATCACCCTCACAGGCTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAgg > 4:236418/1‑121 (MQ=255) cAGATGTGTGTACGTGGTAGGAGCGGGTTCACCC‑GCGAAGAGGC‑CGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAAcc > 3:115867/1‑149 (MQ=255) cAGATGTGTGTACGTGGTAGGAGCGGGTTCACCC‑GCGAAGAGGC‑CGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAAcc > 8:6332/1‑149 (MQ=255) atctctgtACGTGGTAGGAGCGGGTTCACCC‑GCGAAGAGGC‑CGGCACAAACAGCATCACCCTCACAGGGATTTATTAGCCCCAGGCCCAATCAACCGCGCCAACCCAACGTTCTTCAGGGCCAGTTGCAGCGAGCtgtg < 1:239560/134‑1 (MQ=39) aTGTGTGTACGTGGTAGGAGCGGGTTCACCC‑GCGAAGAGGC‑GGGCACAAACAGCATCACCCTCACAGGCTTTTATTAGACCCAGGCCCATTCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGGtgtg > 2:239560/1‑139 (MQ=39) tgtgtACGTGGTAGGAGCGGGTTCACCC‑GCGAAGAGGC‑CGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCggg > 6:157328/1‑149 (MQ=255) tgttaggTGGTAGGAGCGGGTTCACCC‑GCGAAGAGGC‑CGGCAGAAACAGAATAACCCTCACAGGGTTTTATTAGCCGCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGGAGCGAGCTGTGGATAACCTGCgg < 2:36148/141‑1 (MQ=255) tgtACGTGGTAGGAGCGGGTTCACCC‑GCGAAGAGGC‑CGGCACAAACAGCATCACCCTCACAgg > 2:144228/1‑63 (MQ=255) tgtACGTGGTAGGAGCGGGTTCACCC‑GCGAAGAGGC‑CGGCACAAACAGCATCACCCTCACAgg < 1:144228/63‑1 (MQ=255) aCGTGGTAGGAGCGGGTTCACCC‑GCGAAGAGGCTCGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCACAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCgg > 1:36148/1‑144 (MQ=255) gTGGTAGGAGCGGGTTCACCC‑GCGAAGAGGC‑CGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCAt < 2:209619/149‑1 (MQ=255) ggTAGGAGCGGGTTCACCC‑GCGAAGAGGC‑CGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATgg > 4:81450/1‑149 (MQ=255) | TGGTTGAGCGCAGTTTCGGGCCTTTTGGCGGGCATTTGGGGGAAATTGAGTTGTTGGTCTGAGTATTTGATGTTGTCTGTTCGGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGGCCTGGGTCCA‑ACCCCAGATGTGTGTACGTGGTAGGAGCGGGTTCACCC‑GCGAAGAGGC‑CGGCACAAACAGCATCACCCTCACAGGGTTTTATTAGCCCCAGGCCCAATCATCCGCGCCAACCCAAGGTTCTTCAGGGCCAGTTGCAGCGAGCTGTGGATAACCTGCGGGTTGTCATGG > NC_002947/5870178‑5870472 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |