| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 6000932 | 25 (0.590) | 4 (0.120) | 4/198 | NT | 15.0% | intergenic (+39/+70) | PP_5256/amaA | cyclic nucleotide‑binding protein/L‑pipecolate oxidase |
| ? | NC_002947 | = 6000966 | 26 (0.800) | intergenic (+73/+36) | PP_5256/amaA | cyclic nucleotide‑binding protein/L‑pipecolate oxidase | |||||
GTTGAGCAAATTGCAGCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGG‑CCTCTTCGC‑GGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGC > NC_002947/6000788‑6001080 | gTTGAGCAAATTGCAGCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGG‑CCTCTTCGC‑GGGTTAAACCCCGCCTACAag > 2:154962/1‑147 (MQ=255)gTTGAGCAAATTGCAGCGGCTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGGTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGG‑CCTCTTCGC‑GGGTAAACCCGCTCCTACAagta < 8:198892/149‑1 (MQ=255) gAGCAAATTGCAGCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGG‑CCTCTTCGC‑GGGTAAACCCGCTCCTACAggttcac > 5:206573‑M1/1‑142 (MQ=255) cAAATTGCAGCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGG‑CCTCTTCGC‑GGGTAAACCCGCTCCTACAagtag < 5:143258/144‑1 (MQ=255) cAAATTGCAGCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGG‑CCTCTTCGC‑GGGTAAACCCGCTCCTACAagtag > 6:143258/1‑144 (MQ=255) cAGCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGG‑CCTCTTCGC‑GGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTga < 3:133951/149‑1 (MQ=255) cGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGG‑CCTCTTCGC‑GGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGagag < 7:203733/149‑1 (MQ=255) tCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGG‑CCTCTTCGC‑GGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCt > 7:245369/1‑149 (MQ=255) cggcAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGG‑CCTCTTCGC‑GGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTgtggt < 2:156744/149‑1 (MQ=255) ggcAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGG‑CCTCTTCGC‑GGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTgtggt > 7:141414/1‑148 (MQ=255) cGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGG‑CCTCTTCGC‑GGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCtgta > 4:68388‑M2/1‑145 (MQ=255) gTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGG‑CCTCTTCGC‑GGGTAAACCCGCTCCTACAggttcaccacagccctctcaggcggtgcactacttgtaggagc < 6:206573‑M1/149‑44 (MQ=255) gttgttgttGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGG‑CCTCTTCGC‑GGGTAAACCCGCTCCTACAAGTAGTGCACCGCCt < 1:249106/118‑1 (MQ=255) gttgttgttGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGG‑CCTCTTCGC‑GGGTAAACCCGCTCCTACAAGTAGTGCACCGCCt > 2:249106/1‑118 (MQ=255) gttgttgttGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGG‑CCTCTTCGC‑GGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCtgtaggagcggg > 8:245369‑M2/1‑137 (MQ=255) gttgttgttGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGG‑CCTCTTCGC‑GGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCtgtaggagcgg > 2:58944‑M2/1‑137 (MQ=255) gttgCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGG‑CCTCTTCGC‑GGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCtgtaggagcgggtttac > 3:128371‑M2/1‑131 (MQ=255) gCTTAAATCACGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGGGCGCCTGGGCCGG‑CCTCTTCGC‑GGGTAACCCCGCTCCTACAAGTAGGGCACCGCCGGAGAGGGCTGTGGTGACCCTGTCGGCGCGGGTTTACCCGCGAAGAGGCCa < 4:64269/149‑1 (MQ=25) ttCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGG‑CCTCTTCGC‑GGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAg > 1:23954/1‑148 (MQ=255) tcaaGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGACCTCTTCGC‑GGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCtgtg > 1:199454/1‑105 (MQ=255) aagaagGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGG‑CCTCTTCGC‑GGGTAAACCCGCGCCGACAAGTAGTGCACCGCCTGAGAGGGCGGTGGGGAACCTGTAGGCGCGGGTTTTCCCGCGCAGAGGCCAGTaagttc > 8:173151/1‑143 (MQ=38) aagGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGG‑CCTCTTCGC‑GGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTacaaca < 8:141414/149‑1 (MQ=255) ggCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGG‑CCTCTTCGC‑GGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCt < 8:86280‑M2/101‑2 (MQ=255) ggCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGG‑CCTCTTCGC‑GGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCt > 7:86280‑M2/1‑100 (MQ=255) cTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGG‑CCTCTTCGC‑GGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCtgtaggagcgg > 6:276270‑M2/1‑98 (MQ=255) cTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGG‑CCTCTTCGC‑GGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCtgtaggagcgg < 5:276270‑M2/109‑12 (MQ=255) gttgCACAAGTGAGCCTGTGCCGG‑CCTCTTCGC‑GGGTAAACCCGCTCCTACAggttcaccacagccctctcaggcggtgcactacttgtag < 3:162671‑M1/91‑40 (MQ=255) gttgCACAAGTGAGCCTGTGCCGG‑CCTCTTCGC‑GGGTAAACCCGCTCCTACAggttcaccacagccctctcaggcggtgcactacttgtag > 4:162671‑M1/1‑52 (MQ=255) gttgCACAAGTGAGCCTGTGCCGG‑CCTCTTCGC‑GGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCtgtagga < 7:225317‑M2/93‑8 (MQ=255) gttgCACAAGTGAGCCTGTGCCGG‑CCTCTTCGC‑GGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCtgtagga > 8:225317‑M2/1‑86 (MQ=255) gttgCACAAGTGAGCCTGTGCCGG‑CCTCTTCGC‑GGGTAAACCCGCTCCAACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGcccc > 8:80519/1‑149 (MQ=255) caAGTGAGCCTGTGCCGG‑CCTCTTCGC‑GGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTgg < 5:198156/149‑1 (MQ=255) aaGTGAGCCTGTGCCGG‑CCTCTTCGCGGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGCACCGGTAGGAGCGGGTTTTCCCGCGCAGAGGCCCGTACTTTCCACCCCACCCGCCGGCACGGCCCCGCGTgg > 1:7431/1‑149 (MQ=25) aaGTGAGCCTGTGCCGG‑CCTCTTCGC‑GGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGt < 1:154962/149‑1 (MQ=255) aGTGAGCCTGTGCCGG‑CCTCTTCGC‑GGGTAAACCCGCAACAACAACTAGTTCACCCCCTGAGAGGGCTGTGGTGAAACTGTATGAGCGCGTTTAACCGCGAATAGGCCAGTACTTACAACAAAACCCAACAGCAAAGCCCCGCCTGGt > 6:53958/1‑148 (MQ=255) gAGCCTGTGCCGG‑CCTCTTCGC‑GGGTAAAACCGCTACAAAAAAAAATGCACCGCCAGAGAGGGCGGTGGTGAACCAGTATGACCGGGTTTAACCCCCAAGACGCCAGTAAATACAACACCAAACTCAAGCACTGCCCCGCGTTGTACAg > 6:112789/1‑149 (MQ=255) aGCCTGTGCCGG‑CCTCTTCGC‑GGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGTTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGc < 7:173151/149‑1 (MQ=255) aGCCTGTGCCGG‑CCTCTTCGC‑GGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGc < 5:275893/149‑1 (MQ=255) gc‑gGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGa < 2:23954/149‑1 (MQ=255) gTAAACCCGCTCCTACAggttcaccacagccctctcaggcggtgcactacttgtaggagcgggtttacccgcgaagaggccggcacaggctcacttgtgcaaccaactcaggaagccacccttcttgattgaagccggcttctgcaac > 3:128371‑M1/1‑17 (MQ=255) cccGCTCCTACAggttcaccacagccctctcaggcggtgcactacttgtaggagcgggtttacccgcgaagaggccggcacaggctcacttgtgcaaccaactcaggaagccacccttcttgattgaagccggcttctgcaacaacaac > 8:245369‑M1/1‑12 (MQ=255) cccGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTcc > 7:24623/1‑149 (MQ=255) ccGCTCCTACAggttcaccacagccctctcaggcggtgcactacttgtaggagcgggtttacccgcgaagaggccggcacaggctcacttgtgcaaccaactcaggaagccacccttcttgattgaagccggcttctgcaacaacaac > 2:58944‑M1/1‑11 (MQ=255) ccGCTCCTACAggttcaccacagccctctcaggcggtgcactacttgtaggagcgggtttacccgcgaagaggccggcacaggctcacttgtgcaaccaactcaggaag > 6:276270‑M1/1‑11 (MQ=255) ccGCTCCTACAggttcaccacagccctctcaggcggtgcactacttgtaggagcgggtttacccgcgaagaggccggcacaggctcacttgtgcaaccaactcaggaag < 5:276270‑M1/109‑99 (MQ=255) ccGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCtgt < 5:11580‑M2/48‑4 (MQ=255) ccGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCtgt > 6:11580‑M2/1‑45 (MQ=255) ccGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCg > 1:7583/1‑149 (MQ=255) ccGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCg > 5:148412/1‑149 (MQ=255) gCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCtgtaggagcgggtttacccgcgaagaggccggcacaggctcacttgtgcaaccaactcaggaagccacccttcttgattgaagccggcttctgcaacaacaacgac < 6:206573‑M2/149‑107 (MQ=255) gCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCg > 6:65786/1‑147 (MQ=255) tCCTACAggttcaccacagccctctcaggcggtgcactacttgtaggagcgggtttacccgcgaagaggccggcacaggctcacttgtgcaac < 7:225317‑M1/93‑87 (MQ=255) tCCTACAggttcaccacagccctctcaggcggtgcactacttgtaggagcgggtttacccgcgaagaggccggcacaggctcacttgtgcaac > 8:225317‑M1/1‑7 (MQ=255) cTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCtgtaggagcgggtttacccgcgaagaggccggcacaggctcacttgtgcaac < 3:162671‑M2/91‑53 (MQ=255) cTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCtgtaggagcgggtttacccgcgaagaggccggcacaggctcacttgtgcaac > 4:162671‑M2/1‑39 (MQ=255) cTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCg > 5:12367/1‑148 (MQ=255) tACAggttcaccacagccctctcaggcggtgcactacttgtaggagcgggtttacccgcgaagaggccggcacaggctcacttgtgcaaccaactcaggaagccacccttcttgattgaagccggcttctgcaacaacaacgactcccg > 4:68388‑M1/1‑4 (MQ=255) tACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCg > 2:56007/1‑147 (MQ=255) tACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCg > 8:172615/1‑147 (MQ=255) tACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCg > 7:238781/1‑147 (MQ=255) aCAggttcaccacagccctctcaggcggtgcactacttgtaggagcgg > 6:11580‑M1/1‑3 (MQ=255) aCAggttcaccacagccctctcaggcggtgcactacttgtaggagcgg < 5:11580‑M1/48‑46 (MQ=255) aggttcaccacagccctctcaggcggtgcactacttgtaggagcgggtttacccgcgaagaggccggcacaggctcacttgtgcaaccaactcaggaagcc > 7:86280‑M1/1‑1 (MQ=255) aggttcaccacagccctctcaggcggtgcactacttgtaggagcgggtttacccgcgaagaggccggcacaggctcacttgtgcaaccaactcaggaagcc < 8:86280‑M1/101‑101 (MQ=255) aaGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGgc < 6:12367/149‑1 (MQ=255) | GTTGAGCAAATTGCAGCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGG‑CCTCTTCGC‑GGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGC > NC_002947/6000788‑6001080 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |