New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6000932	25 (0.590)	4 (0.120)	4/198	NT	15.0%	intergenic (+39/+70)	PP_5256/amaA	cyclic nucleotide‑binding protein/L‑pipecolate oxidase
	?	NC_002947	= 6000966	26 (0.800)					intergenic (+73/+36)	PP_5256/amaA	cyclic nucleotide‑binding protein/L‑pipecolate oxidase

CGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCA‑TAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATCG  >  NC_002947/6000822‑6001114                                                                                                                                                  |                                                                                                                                                      cGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCtgta                                                                                                                                                   >  4:68388‑M2/1‑145 (MQ=255)         gttgttgttGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCtgtaggagcggg                                                                                                                                           >  8:245369‑M2/1‑137 (MQ=255)         gttgttgttGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCtgtaggagcgg                                                                                                                                            >  2:58944‑M2/1‑137 (MQ=255)               gttgCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCtgtaggagcgggtttac                                                                                                                                      >  3:128371‑M2/1‑131 (MQ=255)                            gCTTAAATCACGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGGGCGCCTGGGCCGGCCTCTTCGC‑GGGTAACCCCGCTCCTACAAGTAGGGCACCGCCGGAGAGGGCTGTGGTGACCCTGTCGGCGCGGGTTTACCCGCGAAGAGGCCa                                                                                                                        <  4:64269/149‑1 (MQ=25)                              ttCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAg                                                                                                                       >  1:23954/1‑148 (MQ=255)                                     aagaagGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCGCCGACAAGTAGTGCACCGCCTGAGAGGGCGGTGGGGAACCTGTAGGCGCGGGTTTTCCCGCGCAGAGGCCAGTaagttc                                                                                                                >  8:173151/1‑143 (MQ=38)                                        aagGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTacaaca                                                                                                            <  8:141414/149‑1 (MQ=255)                                              ggCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCt                                                                                                                                                      <  8:86280‑M2/101‑2 (MQ=255)                                              ggCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCt                                                                                                                                                      >  7:86280‑M2/1‑100 (MQ=255)                                                cTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCtgtaggagcgg                                                                                                                                            >  6:276270‑M2/1‑98 (MQ=255)                                                cTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCtgtaggagcgg                                                                                                                                            <  5:276270‑M2/109‑12 (MQ=255)                                                            gttgCACAAGTGAGCCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCtgtagga                                                                                                                                                >  8:225317‑M2/1‑86 (MQ=255)                                                            gttgCACAAGTGAGCCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCtgtagga                                                                                                                                                <  7:225317‑M2/93‑8 (MQ=255)                                                            gttgCACAAGTGAGCCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCAACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGcccc                                                                                        >  8:80519/1‑149 (MQ=255)                                                                  caAGTGAGCCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTgg                                                                                  <  5:198156/149‑1 (MQ=255)                                                                   aaGTGAGCCTGTGCCGGCCTCTTCGCGGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGCACCGGTAGGAGCGGGTTTTCCCGCGCAGAGGCCCGTACTTTCCACCCCACCCGCCGGCACGGCCCCGCGTgg                                                                                  >  1:7431/1‑149 (MQ=25)                                                                   aaGTGAGCCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGt                                                                                 <  1:154962/149‑1 (MQ=255)                                                                    aGTGAGCCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCAACAACAACTAGTTCACCCCCTGAGAGGGCTGTGGTGAAACTGTATGAGCGCGTTTAACCGCGAATAGGCCAGTACTTACAACAAAACCCAACAGCAAAGCCCCGCCTGGt                                                                                 >  6:53958/1‑148 (MQ=255)                                                                       gAGCCTGTGCCGGCCTCTTCGC‑GGGTAAAACCGCTACAAAAAAAAATGCACCGCCAGAGAGGGCGGTGGTGAACCAGTATGACCGGGTTTAACCCCCAAGACGCCAGTAAATACAACACCAAACTCAAGCACTGCCCCGCGTTGTACAg                                                                             >  6:112789/1‑149 (MQ=255)                                                                        aGCCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGTTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGc                                                                            <  7:173151/149‑1 (MQ=255)                                                                        aGCCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGc                                                                            <  5:275893/149‑1 (MQ=255)                                                                                           gc‑gGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCA‑TAGa                                                        <  2:23954/149‑1 (MQ=255)                                                                                                     cccGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCA‑TAGAACGCTGTcc                                               >  7:24623/1‑149 (MQ=255)                                                                                                      ccGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCtgt                                                                                                                                                    >  6:11580‑M2/1‑45 (MQ=255)                                                                                                      ccGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCtgt                                                                                                                                                    <  5:11580‑M2/48‑4 (MQ=255)                                                                                                      ccGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCA‑TAGAACGCTGTCCg                                              >  5:148412/1‑149 (MQ=255)                                                                                                      ccGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCA‑TAGAACGCTGTCCg                                              >  1:7583/1‑149 (MQ=255)                                                                                                        gCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCtgtaggagcgggtttacccgcgaagaggccggcacaggctcacttgtgcaaccaactcaggaagccacccttcttgattgaagccggcttctgcaacaacaacgac                                             <  6:206573‑M2/149‑107 (MQ=255)                                                                                                        gCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCA‑TAGAACGCTGTCCg                                              >  6:65786/1‑147 (MQ=255)                                                                                                            cTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCtgtaggagcgggtttacccgcgaagaggccggcacaggctcacttgtgcaac                                                                                                   <  3:162671‑M2/91‑53 (MQ=255)                                                                                                            cTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCtgtaggagcgggtttacccgcgaagaggccggcacaggctcacttgtgcaac                                                                                                   >  4:162671‑M2/1‑39 (MQ=255)                                                                                                            cTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCA‑TAGAACGCTGTCCGCAGCg                                         >  5:12367/1‑148 (MQ=255)                                                                                                             tACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCA‑TAGAACGCTGTCCGCAGCg                                         >  7:238781/1‑147 (MQ=255)                                                                                                             tACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCA‑TAGAACGCTGTCCGCAGCg                                         >  8:172615/1‑147 (MQ=255)                                                                                                             tACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCA‑TAGAACGCTGTCCGCAGCg                                         >  2:56007/1‑147 (MQ=255)                                                                                                                aaGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCA‑TAGAACGCTGTCCGCAGCGAAGgc                                    <  6:12367/149‑1 (MQ=255)                                                                                                                    agtGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCA‑TAGAACGCTGTCCGCAGCGAAGgcgcg                                 <  7:80519/148‑1 (MQ=255)                                                                                                                         aCCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCA‑TAGAACGCTGTCCGCAGCGAAGGCGCGCTcaca                           >  2:248476/1‑149 (MQ=255)                                                                                                                                gagaGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCA‑TAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCa                    >  3:258876/1‑149 (MQ=255)                                                                                                                                    gggCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCA‑TAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCgg                <  8:238781/149‑1 (MQ=255)                                                                                                                                     ggCTGTGGTGAACCTGTAGGTGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCA‑TAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGc               <  5:53958/149‑1 (MQ=255)                                                                                                                                      gCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCACTAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGc               <  1:56007/149‑1 (MQ=255)                                                                                                                                          tggtgAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCA‑TAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGaaaa          >  8:250503/1‑149 (MQ=255)                                                                                                                                            gtgAACCtgtaggagcgggtttacccgcgaagaggccggcacaggctcacttgtgcaaccaactcaggaagccacccttcttgattgaagccggcttctgcaacaacaacgactcccggctctgccgccggaaccgctgcaatttgctc         >  5:206573‑M2/1‑7 (MQ=255)                                                                                                                                                aCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCA‑TAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGTGAAAACGGaa     <  5:65786/148‑1 (MQ=255)                                                                                                                                                  cTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCA‑TAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATCg  >  7:113709/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                      CGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCA‑TAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATCG  >  NC_002947/6000822‑6001114

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.