New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 452193	31 (0.730)	3 (0.070)	3/250	NT	8.2%	coding (111/1281 nt)	aruC	acetylornithine aminotransferase
	?	NC_002947	= 452231	37 (0.900)					coding (149/1281 nt)	aruC	acetylornithine aminotransferase

TGAACCTGTTCAACCTGCGCCGCTCGGCTCCTGCCGCCGCCGCCGAGCCCAAGCGTGCGCCGGTGATCGTGCCGCACGCGTCTGAGCAGTCGCCTGAGCGCCTGATGCCCGGCACCGAACGTGCAGCGCAGGTATTCGTGCGTGGCCAGGGCTCGTGGTTGTGGGACAACGAAGGGCATGCCTACCTGGACTTCACTCAGGGCGGTGCGGTCAACAGCTTGGGCCACAGCCCCAGCGTGCTGGTCAAAGCGTTGGGCAACCAGGCTCAGGCGTTGATCAACCCGGGCTCGGGC  >  NC_002947/452084‑452376                                                                                                                                                    |                                                                                                                                                  tGAACCTGTTCAACCTGCGCCGCTCGGCTCCTGCCGCCGCCGCCGAGCCCAAGCGTGCGCCGGTGATCGTGCCGCACGCGTCTGAGCAGTCGCCTGAGCGCCTGATGCCCGGCACCGAACGTGCAGCGCAGGTATTCGTGCGTGGCCAg                                                                                                                                                  >  3:193640‑M2/1‑148 (MQ=255)      cTGTTCAACCTGCGCCGCTCGGCTCCTGCCGCCGCCGCCGAGCCCAAGCGTGCGCCGGTGATCGTGCCGCACGCGTCTGAGCAGTCGCCTGAGCGCCTGATGCCCGGCACCGCACGTGCAGCGCAGGTATTCGTGCGTGGCCAGGGCTc                                                                                                                                             >  7:166385/1‑149 (MQ=255)              ccTGCGCCGCTCGGCTCCTGCCGCCGCCGCCGAGCCCAAGCGTGCGCCGGTGATCGTGCCGCACGCGTCTGAGCAGTCGCCTGAGCGCCTGATGCCCGGCACCGAACGTGCAGCGCAGGTATTCGTGCGTGGCCAGGGCTCGTGGTtgt                                                                                                                                     >  5:180166/1‑149 (MQ=255)                  cgccgcTCGGCTCCTGCCGCCGCCGCCGAGCCCAAGCGTGCGCCGGTGATCGTGCCGCACGCGTCTGAGCAGTCGCCTGAGCGCCTGATGCCCGGCACCGAACGTGCAGCGCAGGTATTCGTGCGTGGCCAGGGCTCGTGGTTGTgg                                                                                                                                   <  4:196766/147‑1 (MQ=255)                     cgcTCGGCTCCTGCCGCCGCCGCCGAGCCCAAGCGTGCGCCGGTGATCGTGCCGCACGCGTCTGAGCAGTCGCCTGAGCGCCTGATGCCCGGCACCGAACGTGCAGCGCAGGTATTCGTGCGTGGCCAGGGCTCGTGGTTGTGGGACaa                                                                                                                              >  7:161185/1‑149 (MQ=255)                               cTGCCGCCGCCGCCGAGCCCAAGCGTGCGCCGGTGATCGTGCCGCACGCGTCTGAGCAGTCGCCTGAGCGCCTGATGCCCGGCACCGAACGTGCAGCGCAGGTATTCGTGCGTGGCCAGGGCTCGTGGTTGTGGGACAACGAAGGGCa                                                                                                                     <  6:180166/148‑1 (MQ=255)                                     ccgccgccgAGCCCAAGCGTGCGCCGGTGATCGTGCCGCACGCGTCTGAGCAGTCGCCTGAGCGCCTGATGCCCGGCACCGAACGTGCAGCGCAGGTATTCGTGCGTGGCCAGGGCTCGTGGTTGTGGGACAACGAAGGGCATGCCTAc                                                                                                              <  8:171768/149‑1 (MQ=255)                                     ccgccgccgAGCCCAAGCGTGCGCCGGTGATCGTGCCGCACGCGTCTGAGCAGTCGCCTGAGCGCCTGATGCCCGGCACCGAACGTGCAGCGCAGGTATTCGTGCGTGGCCAGGGCTCGTGGTTGTGGGACAACGAAGGGCATGCCTAc                                                                                                              >  7:207572/1‑149 (MQ=255)                                            cgAGCCCAAGCGTGCGCCGGTGATCGTGCCGCACGCGTCTGAGCAGTCGCCTGAGCGCCTGATGCCCGGCACCGAACGTGCAGCGCAGGTATTCGTGCGTGGCCAGGGCTCGTGGTTGTGGGACAACGAAGGGCATGCCTACCTGGACt                                                                                                       >  8:106394/1‑149 (MQ=255)                                                cccAAGCGTGCGCCGGTGATCGTGCCGCACGCGTCTGAGCAGTCGCCTGAGCGCCTGATGCCCGGCACCGAACGTGCAGCGCAGGTATTCGTGCGTGGCCAGGGCTCGTGGTTGTGGGACAACGAAGGGCATGCCTACCTGGACtt                                                                                                      <  8:176206/146‑1 (MQ=255)                                                cccAAGCGTGCGCCGGTGATCGTGCCGCACGCGTCTGAGCAGTCGCCTGAGCGCCTGATGCCCGGCACCGAACGTGCAGCGCAGGTATTCGTGCGTGGCCAGGGCTCGTGGTTGTGGGACAACGAAGGGCATGCCTACCTGGACtt                                                                                                      >  7:176206/1‑146 (MQ=255)                                                     gCGTGCGCCGGTGATCGTGCCGCACGCGTCTGAGCAGTCGCCTGAGCGCCTGATGCCCGGCACCGAACGTGCAGCGCAGGTATTCGTGCGTGGCCAGGGCTCGTGGTTGTGGGACAACGAAGGGCATGCCTACCTGGACTTCACTCAgg                                                                                              >  7:81659/1‑149 (MQ=255)                                                     gCGTGCGCCGGTGATCGTGCCGCACGCGTCTGAGCAGTCGCCTGAGCGCCTGATGCCCGGCACCGAACGTGCAGCGCAGGTATTCGTGCGTGGCCAGGGCTCGTGGTTGTGGGACAACGAAGGGCATGCCTACCTGGACTTCACTCAgg                                                                                              <  8:161185/149‑1 (MQ=255)                                                      cGTGCGCCGGTGATCGTGCCGCACGCGTCTGAGCAGTCGCCTGAGCGCCTGATGCCCGGCACCGAACGTGCAGCGCAGGTATTCGTGCGTGGCCAGGGCTCGTGGTTGTGGGACAACGAAGGGCATGCCTACCTGGACTTCACTCAggg                                                                                             >  3:120967/1‑149 (MQ=255)                                                        tGCGCCGGTGATCGTGCCGCACGCGTCTGAGCAGTCGCCTGAGCGCCTGATGCCGGGCACCGAACGTGCAGCGCAGGTATTCGTGCGTGGCCAGGGCTCGTGGTTGTGGGACAACGAAGGGCATGCCTACCTGGACTTCACTCAGGgcg                                                                                           <  8:173686/149‑1 (MQ=255)                                                        tGCGCCGGTGATCGTGCCGCACGCGTCTGAGCAGTCGCCTGAGCGCCTGATGCCCGGCACCGAACGTGCAGCGCAGGTATTCGTGCGTGGCCAGGGCTCGTGGTTGTGGGACAACGAAGGGCATGCCTACCTGGACTTCACTCAGGgcg                                                                                           <  8:207572/149‑1 (MQ=255)                                                           gcCGGTGATCGTGCCGCACGCGTCTGAGCAGTCGCCTGAGCGCCTGATGCCCGGCACCGAACGTGCAGCGCAGGTATTCGTGCGTGGCCAGGGCTCGTGGTTGTGGGACAACGAAGGGCATGCCTACCTGGACTTCACTCAGGgcggtg                                                                                        <  4:120967/149‑1 (MQ=255)                                                                   tCGTGCCGCACGCGTCTGAGCAGTCGCCTGAGCGCCTGATGCCCGGCACCGAACGTGCAGCGCAGGTATTCGTGCGTGGCCAGGGCTCGTGGTTGTGGGACAACGAAGGGCATGCCTACCTGGACTTCACTCAGGGCGGTGCGGTCAAc                                                                                <  5:125075/149‑1 (MQ=255)                                                                      tGCCGCACGCGTCTGAGCAGTCGCCTGAGCGCCTGATGCCCGGCACCGAACGTGCAGCGCAGGTATTCGTGCGTGGCCAGGGCTCGTGGTTGTGGGACAACGAAGGGCATGCCTACCTGGACTTCACTCAGGGCGGTGCGGTCAACAGc                                                                             >  6:37994/1‑149 (MQ=255)                                                                            aCGCGTCTGAGCAGTCGCCTGAGCGCCTGATGCCCGGCACCGAACGTGCAGCGCAGGTATTCGTGCGTGGCCAGGGCTCGTGGTTGTGGGACAACGAAGGGCATGCCTACCTGGACTTCACTCAGGGCGGTGCGGTCAACAGCTTGGGc                                                                       <  5:37994/149‑1 (MQ=255)                                                                              gcgTCTGAGCTGTCGGCTGACGGCCTGATGGCCGGCACCGAACGTGCAGCGGATGTATTCGTGCGTGGCCAGGGCTCGTGGTTGTGGGACAACGAAGGGCATGCCTACCTGGACTTCACTCAGGGCGGTGCGGTCAACAGCTTGGGc                                                                       <  8:166385/147‑1 (MQ=255)                                                                                gTCTGAGCAGTCGCCTGAGCGCCTGATGCCCGGCACCGAACGTGCAGCGCAGGTATTCGTGCGTGGCCAGGGCTCGTGGTTGTGGGACAACGAAGGGCATGCCTACCTGGACTTCACTCAGGGCGGTGCGGTCAACAGCTTGGGCcaca                                                                   <  7:233341/149‑1 (MQ=255)                                                                                               tGAGCGCCTGATGCCCGGCACCGAACGTGCAGCGCAGGTATTCGTGCGTGGCCAGGGCTCGTGGTTGTGGGACAACGAAGGGCATGCCTACCTGGACTTCACTCAGGGCGGTGCGGTCAACAGCTTGGGCCACAGCCCCAGCGTGCTgg                                                    >  4:34888/1‑149 (MQ=255)                                                                                                  gcgcCTGATGCCCGGCACCGAACGTGCAGCGCAGGTATTCTTGCGTGGCCAGGGCTCGTGGTTGTGGGACAACGAAGGGCATGCCTACCTGGACTTCACTCAGGGCGGTGCGGTCAACAGCTTGGGCCACAGCCCCAGCGTGCTg                                                     <  1:220563/145‑1 (MQ=255)                                                                                                  gcgcCTGATGCCCGGCACCGAACGTGCAGCGCAGGTATTCGTGCGTGGCCAGGGCTCGTGGTTGTGGGACAACGAAGGGCATGCCTACCTGGACTTCACTCAGGGCGGTGCGGTCAACAGCTTGGGCCACAGCCCCAGCGTGCTg                                                     >  2:220563/1‑145 (MQ=255)                                                                                                    gcCTGATGCCCGGCACCGAACGTGCAGCGCAGGTATTCGTGCGTGGCCAGGGCTCGTGGTTGTGGGACAACGAAGGGCATGCCTACCTGGACTTCACTCAGGGCGGTGCGGTCAACAGCTTGGGCCACAGCCCCAGCGTGCTGGTCaaa                                               <  3:34888/149‑1 (MQ=255)                                                                                                     ccTGATGCCCGGCACCGAACGTGCAGCGCAGGTATTCGTGCGTGGCCAGGGCTCGTGGTTGTGGGACAACGAAGGGCATGCCTACCTGGACTTCACTCAGGGCGGTGCGGTCAACAGCTTGGGCCACAGCCCCAGCGTGCTGGTCAAAg                                              >  7:7302/1‑149 (MQ=255)                                                                                                     ccTGATGCCCGGCACCGAACGTGCAGCGCAGGTATTCGTGCGTGGCCAGGGCTCGTGGTTGTGGGACAACGAAGGGCATGCCTACCTGGACTTCACTCAGGGCGGTGCGGTCAACAGCTTGGGCCACAGCCCCAGCGTGCTGGTCAAAg                                              >  7:11268/1‑149 (MQ=255)                                                                                                      cTGATGCCCGGCACCGAACGTGCAGCGCAGGTATTCGTGCGTGGCCAgggcatcaggcgctcaggcgactgctcagacgcgtgcggcacgatcaccggcgcacgcttgggctcggcggcggcggcaggagccgagcggcgcaggttgaa                                             <  3:257463‑M2/149‑103 (MQ=255)                                                                                                       tGATGCCCGGCACCGAACGTGCAGCGCAGGTATTCGTGCGTGGCCAgggcatcaggcgctcaggcgactgctcagacgcgtgcggcacgatcaccggcgcacgcttgggctcggcggcggcggcaggagccgagcggcgcaggttgaa                                             <  5:86300‑M2/148‑103 (MQ=255)                                                                                                        gATGCCCGGCACCGAACGTGCAGCGCAGGTATTCGTGCGTGGCCAGGGCTCGTGGTTGTGGGACAACGAAGGGCATGCCTACCTGGACTTCACTCAGGGCGGTGCGGTCAACAGCTTGGGCCACAGCCCCAGCGTGCTGGTCAAAGCGt                                           >  2:158436/1‑149 (MQ=255)                                                                                                          tGCCCGGCACCGAACGTGCAGCGCAGGTATTCGTGCGTGGCCAgggcatcaggcgctcaggcgactgctcagacgcgtgcggcacgatcaccggcgcacgcttgggctcggcggcggcggcaggagccgagcggcgcaggttgaacagg                                         >  4:257463‑M2/1‑43 (MQ=255)                                                                                                          tGCCCGGCACCGAACGTGCAGCGCAGGTATTCGTGCGTGGCCAGGGCTCGTGGTTGTGGGACAACGAAGGGCATGCCTACCTGGACTTCACTCAGGGCGGTGCGGTCAACAGCTTGGGCCACAGCCCCAGCGTGCTGGTCAAAGCGTTg                                         <  1:158436/149‑1 (MQ=255)                                                                                                                         gTGCAGCGCAGGTATTCGTGCGTGGCCAGGGCTCGTGGTTGTGGGACAACGAAGGGCATGCCTACCTGGACTTCACTCAGGGCGGTGCGGTCAACAGCTTGGGCCACAGCCCCAGCGTGCTGGTCAAAGCGTTGGGCAACCAGGCTCAg                          >  6:94215/1‑149 (MQ=255)                                                                                                                             aGCGCAGGTATTCGTGCGTGGCCAGGGCTCGTGGTTGTGGGACAACGAAGGGCATGCCTACCTGGACTTCACTCAGGGCGGTGCGGTCAACAGCTTGGGCCACAGCCCCAGCGTGCTGGTCAAAGCGTTGGGCAACCAGGCTCAGGCGt                      <  5:94215/149‑1 (MQ=255)                                                                                                                                 cAGGTATTCGTGCGTGGCCAGGGCTCGTGGTTGTGGGACAACGAAGGGCATGCCTACCTGGACTTCACTCAGGGCGGTGCGGTCAACAGCTTGGGCCACAGCCCCAGCGTGCTGGTCAAAGCGTTGGGCAACCAGGCTCAGGCGTTGAt                  >  6:32556/1‑149 (MQ=255)                                                                                                                                    gTATTCGTGCGTGGCCAGGGCTCGTGGTTGTGGGACAACGAAGGGCATGCCTACCTGGACTTCACTCAGGGCGGTGCGGTCAACAGCTTGGGCCACAGCCCCAGCGTGCTGGTCAAAGCGTTGGGCAACCAGGCTCAGGCGTTGATCaa               >  5:170863/1‑149 (MQ=255)                                                                                                                                     tATTCGTGCGTGGCCAGGGCTCGTGGTTGTGGGACAACGAAGGGCATGCCTACCTGGACTTCACTCAGGGCGGTGCGGTCAACAGCTTGGGCCACAGCCCCAGCGTGCTGGTCAAAGCGTTGGGCAACCAGGCTCAGGCGTTGATCAAc              <  1:237651/149‑1 (MQ=255)                                                                                                                                       ttCGTGCGTGGCCAGGGCTCGTGGTTGTGGGACAACGAAGGGCATGCCTACCTGGACTTCACTCAGGGCGGTGCGGTCAACAGCTTGGGCCACAGCCCCAGCGTGCTGGTCAAAGCGTTGGGCAACCAGGCTCAGGCGTTGATCAAccc            <  7:106394/149‑1 (MQ=255)                                                                                                                                          gtgcgtgGCCAGGGCTCGTGGTTGTGGGACAACGAAGGGCATGCCTACCTGGACTTCACTCAGGGCGGTGCGGTCAACAGCTTGGGCCACAGCCCCAGCGTGCTGGTCAAAGCGTTGGGCAACCAGGCTCAGGCGTTGATCAACCcgg          <  5:32556/148‑1 (MQ=255)                                                                                                                                            gcgtgGCCAGGGCTCGTGGTTGTGGGACAACGAAGGGCATGCCTACCTGGACTTCACTCAGGGCGGTGCGGTCAACAGCTTGGGCCACAGCCCCAGCGTGc                                                       >  4:241736/1‑101 (MQ=255)                                                                                                                                            gcgtgGCCAGGGCTCGTGGTTGTGGGACAACGAAGGGCATGCCTACCTGGACTTCACTCAGGGCGGTGCGGTCAACAGCTTGGGCCACAGCCCCAGCGTGc                                                       <  3:241736/101‑1 (MQ=255)                                                                                                                                                 gCCAGGGCTCGTGGTTGTGGGACAACGAAGGGCATGCCTACCTGGACTTCACTCAGGGCGGTGCGGTCAACAGCTTGGGCCACAGCCCCAGCGTGCTGGTCAAAGCGTTGGGCAACCAGGCTCAGGCGTTGATCAACCcgggctcgggc  >  1:15707/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                  TGAACCTGTTCAACCTGCGCCGCTCGGCTCCTGCCGCCGCCGCCGAGCCCAAGCGTGCGCCGGTGATCGTGCCGCACGCGTCTGAGCAGTCGCCTGAGCGCCTGATGCCCGGCACCGAACGTGCAGCGCAGGTATTCGTGCGTGGCCAGGGCTCGTGGTTGTGGGACAACGAAGGGCATGCCTACCTGGACTTCACTCAGGGCGGTGCGGTCAACAGCTTGGGCCACAGCCCCAGCGTGCTGGTCAAAGCGTTGGGCAACCAGGCTCAGGCGTTGATCAACCCGGGCTCGGGC  >  NC_002947/452084‑452376

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.