New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1039885	45 (1.070)	3 (0.080)	3/242	NT	6.4%	coding (242/921 nt)	PP_0899	ferredoxin reductase
	?	NC_002947	= 1039923	46 (1.160)					coding (280/921 nt)	PP_0899	ferredoxin reductase

CGCTGCCTGGAAGGGCAACCGGCAGACGCTTTGCCCGAGGCATTGGCATTGGAGAAACATGCCCAGGGCTGGCGTCTGGCTTGCCAGTGCCGGGTGGTCGAGGACCTGCGTGTGGCGTTGTACGACCCCCAGCAGGGTGGCGTACCGGCGCAGGTCTGTGCGTTGGACTGGTTTGGCGATGTGTTGCGCCTGCGGTTGCGCCCCGATCGGGTGGTGCGTTACCAGGCGGGGCAGCACGTGGTGCTGTGGCTAGGCGCGGTTGCTCGGCCTTATTCCTTGGCCAGCCTGCCGGGCGA  >  NC_002947/1039776‑1040071                                                                                                                                                    |                                                                                                                                                     cgcTGCCTGGAAGGGCAACCGGCAGACGCTTTGCCCGAGGCATTGGCATTGGAGAAACATGCCCAGGGCTGGCGTCTGGCTTGCCAGTGCCGGGTGGTCGAGGACCTGCGTGTGGCGTTGTACGACCCCCAGCAGGGTGGCGTACCGGc                                                                                                                                                     <  5:277133‑M2/149‑2 (MQ=255)       cTGGAAGGGCAACCGGCAGACGCTTTGCCCGAGGCATTGGCATTGGAGAAACATGCCCAGGGCTGGCGTCTGGCTTGCCAGTGCCGGGTGGTCGAGGACCTGCGTGTGGCGTTGTACGACCCCCAGCAGGGTGGCGTACCGGcgcaggt                                                                                                                                               <  1:221055‑M2/149‑8 (MQ=255)         ggAAGGGCAACCGGCAGACGCTTTGCCCGAGGCATTGGCATTGGAGAAACATGCCCAGGGCTGGCGTCTGGCTTGCCAGTGCCGGGTGGTCGAGGACCTGCGTGTGGCGTTGTACGACCCCCAGCAGGGTGGCGTACCGGCGCAGGTCt                                                                                                                                             <  4:158231/149‑1 (MQ=255)               gCAACCGGCAGACGCTTTGCCCGAGGCATTGGCATTGGAGAAACATGCCCAGGGCTGGCGTCTGGCTTGCCAGTGCCGGGTGGTCGAGGACCTGCGTGTGGCGTTGTACGACCCCCAGCAGGGTGGCGTACCGGCGCAGGTCTGTGCGt                                                                                                                                       >  8:170832/1‑149 (MQ=255)                 aaCCGGCAGACGCTTTGCCCGAGGCATTGGCATTGGAGAAACATGCCCAGGGCTGGCGTCTGGCTTGCCAGTGCCGGGTGGTCGAGGACCTGCGTGTGGCGTTGTACGACCCCCAGCAGGGTGGCGTACCGGCGCAGGTCTGTTCGTTg                                                                                                                                     <  7:170832/149‑1 (MQ=255)                    cGGCAGACGCTTTGCGCGATGCATTGGCATTGGAGAAACATGCCCAGGGCTGGCGTCTGGCTTGCCAGTGCCGGGTGGTCGAGGACCTGCGTGTGGCGTTGTACGACCCCCAGCAGGGTGGCGTACCGGCGCAGGTCTGTGCGTTGGAc                                                                                                                                  <  3:5786/149‑1 (MQ=255)                      gCAGACGCTTTGCCCGAGGCATTGGCATTGGAGAAACATGCCCAGGGCTGGCGTCTGGCTTGCCAGTGCCGGGTGGTCGAGGACCTGCGTGTGGCGTTGTACGACCCCCAGCAGGGTGGCGTACCGGCGCAGGTCTGTGCGTTGGACTg                                                                                                                                >  2:109525/1‑149 (MQ=255)                                     gAGGCATTGGCATTGGAGAAACATGCCCAGGGCTGGCGTCTGGCTTGCCAGTGCCGGGTGGTCGAGGACCTGCGTGTGGCGTTGTACGACCCCCAGCAGGGTGGCGTACCGGCGCAGGTCTGTGCGTTGGACTGGTTTGGCGATGTGtt                                                                                                                 <  2:221055/149‑1 (MQ=255)                                          attggcattggAGAAACATGCCCAGGGCTGGCGTCTGGCTTGCCAGTGCCGGGTGGTCGAGGACCTGCGTGTGGCGTTGTACGACCCCCAGCAGGGTGGCGTACCGGCGCAGGTCTGTGCGtt                                                                                                                                      >  4:229567/1‑123 (MQ=255)                                          attggcattggAGAAACATGCCCAGGGCTGGCGTCTGGCTTGCCAGTGCCGGGTGGTCGAGGACCTGCGTGTGGCGTTGTACGACCCCCAGCAGGGTGGCGTACCGGCGCAGGTCTGTGCGtt                                                                                                                                      <  3:229567/123‑1 (MQ=255)                                               cattggAGAAACATGCCCAGGGCTGGCGTCTGGCTTGCCAGTGCCGGGTGGTCGAGGACCTGCGTGTGGCGTTGTACGACCCCCAGCAGGGTGGCGTACCGGCGCAGGTCTGTGCGTTGGACTGGTTTGGc                                                                                                                         >  6:91507/1‑131 (MQ=255)                                               cattggAGAAACATGCCCAGGGCTGGCGTCTGGCTTGCCAGTGCCGGGTGGTCGAGGACCTGCGTGTGGCGTTGTACGACCCCCAGCAGGGTGGCGTACCGGCGCAGGTCTGTGCGTTGGACTGGTTTGGc                                                                                                                         <  5:91507/131‑1 (MQ=255)                                                attggAGAAACATGCCCAGGGCTGGCGTCTGGCTTGCCAGTGCCGGGTGGTCGAGGACCTGCGTGTGGCGTTGTACGACCCCCAGCAGGGTGGCGTACCGGCGCAGGTCTGTGCGTTGGACTGGTTTGGCGATGTGTTGCGCCTGCGGt                                                                                                      >  3:190269/1‑149 (MQ=255)                                                    gagaAACATGCCCAGGGCTGGCGTCTGGCTTGCCAGTGCCGGGTGGTCGAGGACCTGCGTGTGGCGTTGTACGACCCCCAGCAGGGTGGCGTACCGGCGCAGGTCTGTGCGTTGGACTGGTTTGGCGATGTGTTGCGCCTGCGGTTgcg                                                                                                  >  7:78254/1‑149 (MQ=255)                                                    gagaAACATGCCCAGGGCTGGCGTCTGGCTTGCCAGTGCCGGGTGGTCGAGGACCTGCGTGTGGCGTTGTACGACCCCCAGCAGGGTGGCGTACCGGCGCAGGTCTGTGCGTTGGACTGGTTTGGCGATGTGTTGCGCCTGCGGTTgcg                                                                                                  >  8:177777/1‑149 (MQ=255)                                                    gagaAACATGCCCAGGGCTGGCGTCTGGCTTGCCAGTGCCGGGTAGTCGAGGACCTGCGTGTGGCGTTGTACGACCCCCAGCAGGGTGGCGTACCGGCGCAGGTCTGTGCGTTGGACTGGTTTGGCGATGTGTTGCGCCTGCGGTTgc                                                                                                   <  4:100023/148‑1 (MQ=255)                                                              ccgaGGGCTGGCGTCTGGCTTGCCAGTGCCGGGTGGTCGAGGACCTGCGTGTGGCGTTGTACGACCCCCAGCAGGGTGGCGTACCGGCGGAGGTCTGTGCGTTGGACTGGTTTGGCGATGTGTTGCGCCTGCGGTTGCGCCCCGATCgg                                                                                        <  1:109525/146‑1 (MQ=255)                                                               ccAGGGCTGGCGTCTGGCTTGCCAGTGCCGGGTGGTCGAGGACCTGCGTGTGGCGTTGTACGACCCCCAGCAGGGTGGCGTACCGGCGCAGGTCTGTGCGTTg                                                                                                                                     >  6:253485/1‑103 (MQ=255)                                                               ccAGGGCTGGCGTCTGGCTTGCCAGTGCCGGGTGGTCGAGGACCTGCGTGTGGCGTTGTACGACCCCCAGCAGGGTGGCGTACCGGCGCAGGTCTGTGCGTTg                                                                                                                                     <  5:253485/103‑1 (MQ=255)                                                                cAGGGCTGGCGTCTGGCTTGCCAGTGCCGGGTGGTCGAGGACCTGCGTGTGGCGTTGTACGACCCCCAGCAGGGTGGCGTACCGGCGCAGGTCTGTGCGTTGGACTGGTTTGGCGATGTGTTGCGCCTGCGGTTGCGCCCCGATCGggt                                                                                      >  6:250069/1‑149 (MQ=255)                                                                         cGTCTGGCTTGCCAGTGCCGGGTGGTCGAGGACCTGCGTGTGGCGTTGTACGACCCCCAGCAGGGTGGCGTACCGGCGCAGGTCTGTGCGTTGGACTGGTTTGGCGATGTGTTGCGCCTGCGGTTGCGCCCCTATCGGTTGGTGCGTTa                                                                             <  6:153218/149‑1 (MQ=255)                                                                               gCTTGCCAGTGCCGGGTGGTCGAGGACCTGCGTGTGGCGTTGTACGACCCCCAGCAGGGTGGCGTACCGGCGCAGGTCTGTGCGTTGGACTGGTTTGGCGATGTGTTGCGCCTGCGGTTgc                                                                                                   <  3:137278/121‑1 (MQ=255)                                                                               gCTTGCCAGTGCCGGGTGGTCGAGGACCTGCGTGTGGCGTTGTACGACCCCCAGCAGGGTGGCGTACCGGCGCAGGTCTGTGCGTTGGACTGGTTTGGCGATGTGTTGCGCCTGCGGTTgc                                                                                                   >  4:137278/1‑121 (MQ=255)                                                                                 ttGCCAGTGCCGGGTGGTCGAGGACCTGCGTGTGGCGTTGTACGACCCCCAGCAGGGTGGCGTACCGGCGCAGGTCtgt                                                                                                                                           >  7:135420/1‑79 (MQ=255)                                                                                 ttGCCAGTGCCGGGTGGTCGAGGACCTGCGTGTGGCGTTGTACGACCCCCAGCAGGGTGGCGTACCGGCGCAGGTCtgt                                                                                                                                           <  8:135420/79‑1 (MQ=255)                                                                                 ttGCCAGTGCCGGGTGGTCGAGGACCTGCGTGTGGCGTTGTACGACCCCCAGCAGGGTGGCGTACCGGCGCAGGTCTGTGCGTTGGACTGGTTTGGCGATGTGTTGCGCCTGCGGTTGTGCCCCGATCGGGTGGTGCGTTACCAGGCgg                                                                     >  6:68449/1‑149 (MQ=255)                                                                                    ccAGTGCCGGGTGGTCGAGGACCTGCGTGTGGCGTTGTACGACCCCCAGCAGGGTGGCGTACCGGCGCAGGTCTGTGCGTTGGACTGGTTTGGCGATGTGTTGCGCCTGCGGTTGCGCCCCGATCGGGTGGTGCGTTACCAGGCgggg                                                                   <  5:250069/148‑1 (MQ=255)                                                                                     cAGTGCCGGGTGGTCGAGGACCTGCGTGTGGCGTTGTACGACCCCCAGCAGGGTGGCGTATCGGCGCAGGTCTGTGCGTTGGACTGGTTTGGCGATGTGTTGCGCCTGCGGTTGCGCCCCGATCGGGTGGTGCGTTACCAGGCgggg                                                                   >  3:215999/1‑147 (MQ=255)                                                                                            gggTGGTCGAGGACCTGCGTGTGGCGTTGTACGACCCCCAGCAGGGTGGCGTACCGGCGCAGGTCTGTGCGTTGGACTGGTTTGGCGATGTGTTGCGCCTGCGGTTGCGCCCCGATCGGGTGGTGCGTTACCAGGCGGGGCAGCACgtg                                                          <  4:190269/149‑1 (MQ=255)                                                                                              gtggtCGAGGACCTGCGTGTGGCGTTGTACGACCCCCAGCAGGGTGGCGTACCGGCGCAGGTCTGTGCGTTGGACTGGTTTGGCGATGTGTTGCGCCTGCGGTTGCGCCCCGATCGGGTGGTGCGTTACCAGGCGGGGCAGCACgtggt                                                        <  7:177777/149‑1 (MQ=255)                                                                                               tggtCGAGGACCTGCGTGTGGCGTTGTACGACCCCCAGCAGGGTGGCGTACCGGCGCAGGTCTGTGCGTTGGACTGGTTTGGCGATGTGTTGCGCCTGCGGTTGCGCCCCGATCGGGTGGTGCGTTACCAGGCGGGGCAGCACgtggtg                                                       <  6:277133/149‑1 (MQ=255)                                                                                                   cGAGGACCTCCGTGTCGCGTTGTACGACCCCCACCAGGGTGGCGTACCGGAGCAGGTCTGTGAGTTGGACTGGATTGGCGATGTGTTGCGCCTGCGGTTCCGCCCCGATCGGGTGGTCAGTTACCACGCGGGGCAGCACgtggtcatgt                                                   >  4:250005/1‑144 (MQ=255)                                                                                                    gAGGACCTGCGTGTGGCGTTGTACGACCCCCAGCAGGGTGGCGTACCGGCGCAGGTCTGTGCGTTGGACTGGTTTGGCGATGTGTTGCGCCTGCGGTTGCGCCCCGATCGGGTGGTGCGTTACCAGGCGGGGCAGCACGTGGTGCtgtg                                                  >  4:15156/1‑149 (MQ=255)                                                                                                     aGGACCTGCGTGTGGCGTTGTACGACCCCCAGCAGGGTGGCGTACCGGcgcaggtcctcgaccacccggcactggcaagccagacgccagccctgggcatgtttctccaatgccaatgcctcgggcaaagcgtctgccggttgcccttc                                                 <  1:95215‑M2/149‑102 (MQ=255)                                                                                                       gACCTGCGTGTGGCGTTGTACGACCCCCAGCAGGGTGGCGTACCGGcgcaggtcctcgaccacccggcactggcaagccagacgccagccctgggcatgtttctccaatgccaatgcctcgggcaaagcgtctgccggttgcccttcca                                               >  2:95215‑M2/1‑46 (MQ=255)                                                                                                       gACCTGCGTGTGGCGTTGTACGACCCCCAGCAGGGTGGCGTACCGGCGCAGGTCTGTGCGTTGGACTGGTTTGGCGATGTGTTGCGCCTGCGGTTGCGCCCCGATCGGGTGGTGCGTTACCAGGCGGGGCAGCACCACGTGCtgccc                                                 >  8:179317/1‑144 (MQ=255)                                                                                                       gACCTGCGTGTGGCGTTGTACGACCCCCAGCAGGGTGGCGTACCGGCGCAGGTCTGTGCGTTGGACTGGTTTGGCGATGTGTTGCGCCTGCGGTTGCGCCCCGATCGGGTGGTGCGTTACCAGGCGGGGCAGCACCACGTGCtgccc                                                 <  7:179317/147‑4 (MQ=255)                                                                                                       gACCTGCGTGTCGCGTTGTACGACCCCCAGCAGGGTGGCGTACCGGCGCAGGTCTGTGCGTTGGACTGGTTTGGCGATGTGTTGAGCCTGCGGTTGCGCCCCGATCGGGTGGTGCGTTACCAGGAGTGGCAGCACGTGGTGCTGAGGc                                                >  3:91676/1‑148 (MQ=255)                                                                                                         ccTGCGTGTGGCGTTGTACGACCCCCAGCAGGGTGGCGTACCGGcgcaggtcctcgaccacccggcactggcaagccagacgccagccctgggcatgtttctccaatgccaatgcctcgggcaaagcgtctgccggttgcccttccagg                                             <  3:227595‑M2/149‑106 (MQ=255)                                                                                                          cTGCGTGTGGCGTTGTACGACCCCCAGCAGGGTGGCGTACCGGCGCAGGTCTGTGCGTTGGACTGGTTTGGCGATGTGTTGCGCCTGCGGTTGCGCCCCGATCGGGTGGTGCGTTACCAGGCGGGGCAGCACGTGGTGCTGTGGCTAgg                                            >  7:192892/1‑149 (MQ=255)                                                                                                          cTGCGTGTGGCGTTGTACGACCCCCAGCAGGGTGGCGTACCGGCGCAGGTCTGTGCGTTGGACTGGTTTGGCGATGTGTTGCGCCTGCGGTTGCGCCCCGATCGGGTGGTGCGTTACCAGGCGGGGCAGCACGTGGTGCTGTGGCTAgg                                            >  2:143932/1‑149 (MQ=255)                                                                                                            gCGTGTGGCGTTGTACGACCCCCAGCAGGGTGGCGTACCGGCGCAGGTCTGTGCGTTGGACTGGTTTGGCGATGTGTTGCGCCTGCGGTTGCGCCCCGATCGGGTGGTGCGTTAc                                                                            >  6:266529/1‑115 (MQ=255)                                                                                                                        gTACGACCCCCAGCAGGGTGGCGTACCGGCGCAGGTCTGTGCGTTGGACTGGTTTGGCGATGTGTTGCGCCTGCGGTTGCGCCCCGATCGGGTGGTGCGTTACCAGGCGGGGCAGCACGTGGTGCTGTGGCTAGGCGCGGTTGCTCgg                               <  8:192892/148‑1 (MQ=255)                                                                                                                         tACGACCCCCAGCAGGGTGGCGTACCGGCGCAGGTCTGTGCGTTGGACTGGTTTGGCGATGTGTTGCGCCTGCGGTTGCGCCCCGATCGGGTGGTGCGTTACCAGGCGGGGCAGCACGTGGTGCTGTGGCTAGGCGCGGTTGCTCGGcc                             >  7:56995/1‑149 (MQ=255)                                                                                                                              cccccAGCAGGGTGGCGTACCGGCGCAGGTGTGTGCGTTGGACTGGTTTGGCGATGTGTTGCGCCTGCGGTTGCGCCCCGATCGGGTGGTGCGTTACCAGGCGGGGCAGCACGTGGTGCTGTGGCTAGGCGCGGTTGCTCGGCCTTAtt                        >  1:22113/1‑149 (MQ=255)                                                                                                                               ccccAGCAGGGTGGCGTACCGGCGCAGGTCTGTGCGTTGGACTGGTTTGGCGATGTGTTGCGCCTGCGGTTGCGCCCCGATCGGGTGGTGCGTTACCAGGCGGGGCAGCACGTGGTGCTGTGGCTAGGCGCGGTTGCTCGGCCTTATTc                       <  2:61685/149‑1 (MQ=255)                                                                                                                                cccAGCAGGGTGGCGTACCGGCGCAGGTCTGTGCGTTGGACTGGTTTGGCGATGTGTTGCGCCTGCGGTTGCGCCCCGATCGGGTGGTGCGTTACCAGGCGGGGCAGCACGTGGTGCTGTGGCTAGGCGCGGTTGCTCGGCCTTATTcc                      <  3:250005/149‑1 (MQ=255)                                                                                                                                  cagcagGGTGGCGTACCGGCGCAGGTCTGTGCGGTGGACTGGTTTCGCGATGTGTTGCGCCTGCGGTTGCGCCCCGATCGGGTGGTGCGTTACCAGGCGGGGCAGCACGTGGTGCTCTGGCTAGCCGAGGTTGCTCGGCCTTAATCCtt                    >  5:217423/1‑149 (MQ=255)                                                                                                                                   tgcagGGTGGCGTACCGGCGCAGGTCTGTGCGTTGGACTGGTTTGGCGATGTGTTGCGCCTGCGGTTGCGCCCCGATCGGGTGGTGCGTTACCAGGCGGGGCAGCACGTGGTGCTGTGGCTAGGCGCGGTTGCTCGGCCTTATTCCTTg                   <  1:29473/148‑1 (MQ=255)                                                                                                                                   agcagGGTGGCGTACCGGCGCAGGTCTGTGCGTTGGACTGGTTTGGCGATGTGTTGCGCCTGCGGTTGCGCCCCGATCGGGTGGTGCGTTACCAGGCGGGGCAGCACGTGGTGCTGTGGCTAGGCGCGGTTGCTCGGCCTTATTCCTTg                   <  1:182800/149‑1 (MQ=255)                                                                                                                                    gcagGGTGGCGTACCGGCGCAGGTCTGTGCGTTGGACTGGTTTGGCGATGTGTTGCGCCTGCGGTTGCGCCCCGATCGGGTGGTGCGTTACCAGGCGGGGCAGCACGTGGTGCTGTGGCTAGGCGCGGTTGCTCGGCCTTATTCCTTgg                  <  3:15156/149‑1 (MQ=255)                                                                                                                                     cagGGTGGCGTACCGGCGCAGGTCTGTGCGTTGGACTGGTTTGGCGATGTGTTGCGCCTGCGGTTGCGCCCCGATCGGGTGGTGCGTTACCAGGCGGGGCAGCACGTGGTGCTGTGGCTAGGCGCGGTTGCTCGGCCTTATTCCTTg                   >  2:29473/1‑147 (MQ=255)                                                                                                                                              gTACCGGCGCAGGTCTGTGCGTTGGACTGGTTTGGCGATGTGTTGCACCTGCGGTTGCGCCCCGATCGGGTGGTGCGTTACCAGGCGGGGCAGCACGTGGTGCTGTGGCTAgg                                            <  6:143750/113‑1 (MQ=255)                                                                                                                                              gTACCGGCGCAGGTCTGTGCGTTGGACTGGTTTGGCGATGTGTTGCACCTGCGGTTGCGCCCCGATCGGGTGGTGCGTTACCAGGCGCGGCAGCACGTGGTGCTGTGGCTAgg                                            >  5:143750/1‑113 (MQ=255)                                                                                                                                                aCCGGCGCAGGTCTGTGCGTTGGACTGGTTTGGCGATGTGTTGCGCCTGCGGTTGCGCCCCGATCGGGTGGTGCGTTACCAGGCGGGGCAGCACGTGGTGCTGTGGCTAGGCGCGGTTGCTCGGCCTTATTCCTTGGCAAGCCTGCCgg      >  8:25981/1‑149 (MQ=255)                                                                                                                                                    gcgcAGGTCTGTGCGTTGGACTGGTTTGGCGATGTGTTGCGCCTGCGGTTGCGCCCCGATCGGGTGGTGCGTTACCAGGCGGGGCAGCACGTGGTGCTGTGGCTAGGCGCGGTTGCTCGGCCTTATTCCTTGGCCAGCCTGCCGGGc    >  2:91883/1‑147 (MQ=255)                                                                                                                                                    gcgcAGGTCTGTGCGTTGGACTGGTTTGGCGATGTGTTGCGCCTGCGGTTGCGCCCCGATCGGGTGGTGCGTTACCAGGCGGGGCAGCACGTGGTGCTGTGGCTAGGCGCGGTTGCTCGGCCTTATTCCTTGGCCAGCCTGCCGGGCGa  <  8:78254/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                     CGCTGCCTGGAAGGGCAACCGGCAGACGCTTTGCCCGAGGCATTGGCATTGGAGAAACATGCCCAGGGCTGGCGTCTGGCTTGCCAGTGCCGGGTGGTCGAGGACCTGCGTGTGGCGTTGTACGACCCCCAGCAGGGTGGCGTACCGGCGCAGGTCTGTGCGTTGGACTGGTTTGGCGATGTGTTGCGCCTGCGGTTGCGCCCCGATCGGGTGGTGCGTTACCAGGCGGGGCAGCACGTGGTGCTGTGGCTAGGCGCGGTTGCTCGGCCTTATTCCTTGGCCAGCCTGCCGGGCGA  >  NC_002947/1039776‑1040071

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.