New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1083135 =	53 (1.260)	3 (0.080)	3/242	NT	5.9%	coding (2790/3822 nt)	PP_0938	hypothetical protein
	?	NC_002947	1083175 =	46 (1.160)					coding (2830/3822 nt)	PP_0938	hypothetical protein

CGGGCCGGCTGGCTGGGGACGACCCCGGTGGCAGCGCGCGGCA‑GAACCTGCAAAGCGTCGACCTGAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTACCGGATGCCAAGGGCGCGCCCGTGGTCGTGCGCATGCAGACCTTGCGGCTGCCTGCCGCCAGCGCCGCTGAACAGCAGGCTGAAGACGGCCCCGACCCGC  >  NC_002947/1083032‑1083319                                                                                                                                                 |                                                                                                                                                 cGGGCCGGCTGGCTGGGGACGACCCCGGTGGCAGCGCGCGGCA‑GAACCTGCAAAGCGTCGACCTGAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTg                                                                                                                                             <  6:9838/149‑1 (MQ=255)  gggCCGGCTGGCTGGGGACGACCCCGGTGGCAGCGCGCGGCA‑GAACCTGCAAAGCGTCGACCTGAGCATCGGCCAGTTGAAAGCCTTCGGCGTGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTgc                                                                                                                                            <  6:16820/149‑1 (MQ=255)    gCCGGCTGGCTGGGGACGACCCCGGTGGCAGCGCGCGGCA‑GAACCTGCAAAGCGTCGACCTGAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTgcgc                                                                                                                                          >  1:31693/1‑149 (MQ=255)      cGGCTGGCTGGGGACGACCCCGGTGGCAGCGCGCGGCA‑GAACCTGCAAAGCGTCGACCTGAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCt                                                                                                                                        >  2:42686/1‑149 (MQ=255)         ctggctggGGACGACCCCGGTGGCAGCGCGCGGCA‑GAACCTGCAAAGCGTCGACCTGAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGa                                                                                                                                     <  1:15345/149‑1 (MQ=255)                gggACGACCCCGGTGGCAGCGCGCGGCA‑GAACCTGCAAAGCGTCGACCTGAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCa                                                                                                                                <  2:31693/147‑1 (MQ=255)                  gacgacCCCGGTGGCAGCGCGCGGCAGGAACCTGCAAAGCGTCGACCTGAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAg                                                                                                                              >  1:149199/1‑148 (MQ=255)                  gacgacCCCGGTGGCAGCGCGCGGCA‑GAACCTGCAAAGCGTCGACCTGAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAgg                                                                                                                             >  3:209903/1‑148 (MQ=255)                   acgacCCCGGTGGCAGCGCGCGGCA‑GAACCTGCAAAGCGTCGACCTGAGCATCTGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAgg                                                                                                                             >  1:70522/1‑147 (MQ=255)                       ccccGGTGGCAGCGCGCGGCA‑GAACCTGCAAAGCGTCGACCTGAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCa                                                                                                                       >  6:41322/1‑149 (MQ=255)                        cccGGTGGCAGCGCGCGGCA‑GAACCTGCAAAGCGTCGACCTGAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCAt                                                                                                                      >  3:252774/1‑149 (MQ=255)                          cGGTGGCAGCGCGCGGCA‑GAACCTGCAAAGCGTCGACCTGAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTg                                                                                                                    <  3:183582/149‑1 (MQ=255)                            gTGGCAGCGCGCGGCA‑GAACCTGCAAAGCGTCGACCTGAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTgg                                                                                                                   >  4:103673/1‑148 (MQ=255)                                   ccacgggcgcgcccttggcatccggtacgcgcgcattaccaatgacttccttgctgtcgaggcgcaaatcCCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGAtt                                                                                                                                               <  7:185646‑M1/44‑1 (MQ=255)                                   ccacgggcgcgcccttggcatccggtacgcgcgcattaccaatgacttccttgctgtcgaggcgcaaatcCCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGAtt                                                                                                                                               >  8:185646‑M1/71‑114 (MQ=255)                                         gCA‑GAACCTGCAAAGCGTCGACCTGAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTAc                                                                                                     >  8:142851/1‑149 (MQ=255)                                         gCA‑GAACCTGCAAAGCGTCGACCTGAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTAc                                                                                                     <  5:41322/149‑1 (MQ=255)                                         gCA‑GAACCTGCAAAGCGTCGACCTGAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTAc                                                                                                     >  4:203712/1‑149 (MQ=255)                                                      aaGCTTCGACCTGAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTACCGGATGCCAAgg                                                                                         <  2:70522/149‑1 (MQ=255)                                                        gCGTCGACCTGAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTACCGGATGCCAAGGgc                                                                                       <  4:252774/149‑1 (MQ=255)                                                         cGTCGACCTGAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTACCGGATGCCAAGGgcg                                                                                      >  5:208721/1‑149 (MQ=255)                                                          gTCGACCTGAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATg                                                                                                              >  7:70959/1‑124 (MQ=255)                                                          gTCGACCTGAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATg                                                                                                              <  8:70959/124‑1 (MQ=255)                                                               ccTGAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTACCGGATGCCAAGGGCGCGCCCg                                                                                >  3:59796/1‑149 (MQ=255)                                                                cTGAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTACCGGATGCCAAGGGCGCGCCCGt                                                                               <  4:59796/149‑1 (MQ=255)                                                                  gAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCAGGGCGGCCCGGCCTGGGATTTGCGCCTCGAc                                                                                                                                    <  6:156070/94‑1 (MQ=255)                                                                  gAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCAGGGCGGCCCGGCCTGGGATTTGCGCCTCGAc                                                                                                                                    >  5:156070/1‑94 (MQ=255)                                                                   aGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTACCGGATGCCAAGGGCGCGCCCGTg                                                                              <  4:224395/147‑1 (MQ=255)                                                                    gCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTACCGGATGCCAAGGGCGCGCCCGTGGTc                                                                           <  5:112171/149‑1 (MQ=255)                                                                      aTCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTACCGGATGCCAAGGGCGCGCCCGTGGTCGt                                                                         >  6:39435/1‑149 (MQ=255)                                                                      aTCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTACCGGATGCCAAGGGCGCGCCCGTGGTCGt                                                                         <  3:33427/149‑1 (MQ=255)                                                                       tCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTACCGGATGCCAAGGGCGCGCCCGTGGTCGTg                                                                        >  3:109873/1‑149 (MQ=255)                                                                         ggCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTACCGGATGCCAAGGGCGCGCCCGTGGTCGTgc                                                                       <  1:123637/148‑1 (MQ=255)                                                                         ggCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTACCGGATGCCAAGGGCGCGCCCGTGGTCGTgc                                                                       <  1:42686/148‑1 (MQ=255)                                                                          gCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTACCGGATGCCAAGGGCGCGCCCGTGGTCGTgcg                                                                      >  2:201379/1‑148 (MQ=255)                                                                            cAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTACCGGATGCCAAGGGCGCGCCCGTGGTCGTGCGCAt                                                                   <  3:203712/149‑1 (MQ=255)                                                                             aGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTACCGGATGCCAAGGGCGCGCCCGTGGTCGTGCGCATg                                                                  >  3:148641/1‑149 (MQ=255)                                                                             aGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTACCGGATGCCAAGGGCGCGCCCGTGGTCGTGCGCATg                                                                  <  7:142851/149‑1 (MQ=255)                                                                                    aGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTACCGGATGCCAAGGGCGCGCCCGTGGTCGTGCGCATGCAGACCt                                                           <  6:208721/149‑1 (MQ=255)                                                                                              aTGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTACCGGATGCCAAGGGCGCGCCCGTGGTCGTGCGCATGCAGACCTTGCGGctgcc                                                 >  7:12464/1‑149 (MQ=255)                                                                                                   ccTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTACCGGATGCCAAGGGCGCGCCCGTGGTCGTGCGCATg                                                                  >  2:73123/1‑127 (MQ=255)                                                                                                     aatcccaggccgggccgccccgggccaggcggaccacggcctggGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTACCGGATGCCAAGGGCGCGCCCGTgg                                                                             >  8:185646‑M2/45‑114 (MQ=255)                                                                                                     aatcccaggccgggccgccccgggccaggcggaccacggcctggGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTACCGGATGCCAAGGGCGCGCCCGTgg                                                                             <  7:185646‑M2/70‑1 (MQ=255)                                                                                                       aaCCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTACCGGATGCCAAGGGCGCGCCCGTGGTCGTGCGCATGCAGACCTTGCGGctgcct                                                <  6:24989/141‑1 (MQ=255)                                                                                                       aaCCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTACCGGATGCCAAGGGCGCGCCCGTGGTCGTGCGCATGCAGACCTTGCGGctgcct                                                >  5:24989/1‑141 (MQ=255)                                                                                                          caggccgggccgccccgggccaggcggaccacggcctggGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTACCGGATGCCAAGGGCGCGCCCGTGGTCGTGCGCATGCAGACCTTGCGGCTGCCTGCCGCCAgcgc                                     >  5:204208‑M2/40‑149 (MQ=255)                                                                                                           AGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTACCGGATGCCAAGGGCGCGCCCGTGGTCGTGCGCATGCAGACCTTGCGGCTGCCTGCCGCCAGcgcc                                    >  2:47125‑M1/1‑149 (MQ=255)                                                                                                            GGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTACCGGATGCCAAGGGCGCGCCCGTGGTCGTGCGCATGCAGACCTTGCGGCTGCCTGCCGCCAGcgccg                                   <  1:180117‑M1/149‑1 (MQ=255)                                                                                                              CCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTACCGGATGCCAAGGGCGCGCCCGTGGTCGTGCGCATGCAGACCTTGCGGCTGCCTGCCGCCAGCGCCGCt                                 >  2:180117‑M1/1‑149 (MQ=255)                                                                                                                     ccGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTACCGGATGCCAAGGGCGCGCCCGTGGTCGTGCGCATGCAGACCTTGCGGCTGCCTGCCGCCAGCGCCGCTGAAcag                           >  6:77077/1‑148 (MQ=255)                                                                                                                       gCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTACCGGATGCCAAGGGCGCGCCCGTGGTCGTGCGCATGCAGACCTTGCGGCTGCCTGCCGCCAGCGCCGCTGAAcagcag                        <  4:148641/149‑1 (MQ=255)                                                                                                                        ccTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGACGTCATTGGTAATGCGCGCGTACCGGATGCCAAGGGCGCGCCCCTGGTCGTGCGCATGCAGACCTTGCGGCTGCCTGCCGCCAGCGCCGCTGAACAGCAgg                       >  5:60690/1‑149 (MQ=255)                                                                                                                             cccGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTACCGGATGCCAAGGGCGCGCCCGTGGTCGTGCGCATGCAGACCTTGCGGCTGCCTGCCGCCAGCGCCGCTGAACAGCAGGCTGaa                  <  4:109873/149‑1 (MQ=255)                                                                                                                              gcGGGTCGGCGCGGGCTGGGATTTGCGCCTCGACAGCAAGGAAGTGTTTGGTAATGCGCGCGTACCGGATGCCAAGGGCTCGCCCGTGGTCGTGCGGATGGAGACCTTGCGGCTGCCTGAGGCCAGCGCCGGTGAACAGCAGGGTGAAg                 <  4:209903/148‑1 (MQ=255)                                                                                                                                      gcccggccTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTACCGGATGCCAAGGGCGCGCCCGTGGTCGTGCGCATGCAGACCTTGCGGCTGCCTGCCGCCAGCGCCGCTGAACAGCAGGCTGAAGACGGcccc         >  6:87697/1‑149 (MQ=255)                                                                                                                                            cctggGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTACCGGATGCCAAGGGCGCGCCCGTGGTCGTGCGCATGCAGACCTTGCGGCTGCCTGCCGCCAGCGCCGCTGAACAGCAGGCTGAAGACGGCCCCGACCCg   <  3:103673‑M2/144‑1 (MQ=255)                                                                                                                                             ctggGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTACCGGATGCCAAGGGCGCGCCCGTGGTCGTGCGCATGCAGACCTTGCGGCTGCCTGCCGCCAGCGCCGCTGAACAGCAGGCTGAAGACGGCCCCGACCCGc  >  3:44199‑M2/5‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                 CGGGCCGGCTGGCTGGGGACGACCCCGGTGGCAGCGCGCGGCA‑GAACCTGCAAAGCGTCGACCTGAGCATCGGCCAGTTGAAAGCCTTCGGCATGGACCTGAACCAGGCCGTGGTCCGCCTGGCCCGGGGCGGCCCGGCCTGGGATTTGCGCCTCGACAGCAAGGAAGTCATTGGTAATGCGCGCGTACCGGATGCCAAGGGCGCGCCCGTGGTCGTGCGCATGCAGACCTTGCGGCTGCCTGCCGCCAGCGCCGCTGAACAGCAGGCTGAAGACGGCCCCGACCCGC  >  NC_002947/1083032‑1083319

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.