New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1521404	51 (1.210)	5 (0.120)	5/248	NT	9.5%	coding (661/1353 nt)	murD	UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase
	?	NC_002947	= 1521433	46 (1.130)					coding (690/1353 nt)	murD	UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase

GAACATCAGCGAAGACCACATGGACCGCTATAGCGGCCTTCCGGCCTACCACCTGGCCAAACACCGGATTTTCCGCGGTGCCCGCCAGGTGGTGGTCAACCGCCAGGACGCCCTGAGCCGGCCGCTGCCGGTGGAAGGCCGTCCATGCTGGACCTTCGGCCTCAACCCGCCCGACTTCAAAGCGTTTGGCCTGCGTGAAGTGGACGGTGAGAAATACCTGGCGTTCGAGTTCCAGACGCTGATGCCGGCGCGTGAACTGAAGGTTCGCGGTGCTCACAACCAGAGT  >  NC_002947/1521295‑1521580                                                                                                                                           |                                                                                                                                                    gAACATCAGCGAAGACCACATGGACCGCTATAGCGGCCTTCCGGCCTACCACCTGGCCAAACACCGGATTTTCCGCGGTGCCCGCCAGGTGGTGGTCAACCGCCAGGACGCCCTGAGCCGGCCGCTGCCGGTGGAAGGCCGTCCATGCt                                                                                                                                           >  3:237466/1‑149 (MQ=255)        aGCGAAGACCACATGGACCGCTATAGCGGCCTTCCGGCCTACCACCTGGCCAAACACCGGATTTTCCGCGGTGCCCGCCAGGTGGTGGTCAACCGCCAGGACGCCCTGAGCCGGCCGCTGCCGGTGGAAGGCCGTCCATGCTGGACCtt                                                                                                                                    <  8:82247/149‑1 (MQ=255)        aGCGAAGACCACATGGACCGCTATAGCGGCCTTCCGGCCTACCACCTGGCCAAACACCGGATTTTCCGCGGTGCCCGCCAGGTGGTGGTCAACCGCCAGGACGCCCTGAGCCGGCCGCTGCCGGTGGAAGGCCGTCCATGCTGGACCtt                                                                                                                                    <  8:78363/149‑1 (MQ=255)          cGAAGACCACATGGACCGCTATAGCGGCCTTCCGGCCTACCACCTGGCCAAACACCGGATTTTCCGCGGTGCCCGCCAGGTGGTGGTCAACCGCCAGGACGCCCTGAGCCGGCCGCTGCCGGTGGAAGGCCGTCCATGCTGGACCTTCg                                                                                                                                  <  7:146485/149‑1 (MQ=255)                 cacaTGGACCGCTATAGCGGCCTTCCGGCCTACCACCTGGCCAAACACCGGATTTTCCGCGGTGCCCGCCAGGTGGTGGTCAACCGCCAGGACGCCCTGAGCCGGCCGCTGCCGGTGGAAGGCCGTCCATGCTGGACCTTCGGCCTCaa                                                                                                                           >  6:166871/1‑149 (MQ=255)                     tGGACCGCTATAGCGGCCTTCCGGCCTACCACCTGGCCAAACACCGGATTTTCCGCGGTGCCCGCCAGGTGGTGGTCAACCGCCAGGACGCCCTGAGCCGGCCGCTGCCGGTGGAAGGCCGTCCATGCTGGACCTTCGGCCTCAAcccg                                                                                                                       >  2:165023/1‑149 (MQ=255)                        aCCGCTATAGCGGCCTTCCGGCCTACCACCTGGCCAAACACCGGATTTTCCGCGGTGCCCGCCAGGTGGTGGTCAACCGCCAGGACGCCCTGAGCCGGCCGCTGCCGGTGGAAGGCCGTCCATGCTGGACCTTCGGCCTCAAcccgccc                                                                                                                    >  6:1032/1‑149 (MQ=255)                          cGCTATAGCGGCCTTCCGGCCTACCACCTGGCCAAACACCGGATTTTCCGCGGTGCCCGCCAGGTGGTGGTCAACCGCCAGGACGCCCTGAGCCGGCCGCTGCCGGTGGAAGGCCGTCCATGCTGGACCTTCGGCCTCAACCCGCCCGa                                                                                                                  <  5:1032/149‑1 (MQ=255)                            cTATAGCGGCCTTCCGGCCTACCACCTGGCCAAACACCGGATTTTCCGCGGTGCCCTCCAGGTGGTGGTCAACCGCCAGGACGCCCTGAGCCGGCCGCTGCCGGTGGAAGGCCGTCCATGCTGGACCTTCGGCCTCAACCCGCCCGACt                                                                                                                >  8:25201/1‑149 (MQ=255)                             tataGCGGCCTTCCGGCCTACCACCTGGCCAAACACCGGATTTTCCGCGGTGCCCGCCAGGTGGTGGTCAACCGCCAGGACGCCCTGAGCCGGCCGCTGCCGGTGGAAGGCCGTCCATGCTGGACCTTCGGCCTCAACCCGCCCGACtt                                                                                                               >  6:205412/1‑149 (MQ=255)                              ataGCGGCCTTCCGGCCTACCACCTGGCCAAACACCGGATTTTCCGCGGTGCCCGCCAGGTGGTGGTCAACAGCCAGGACGCCCTGAGCCGGCCGCTGCCGGTGGAAGGCCGTCCATGCTGGACCTTCGGCCTCAACCCGCCCGACtt                                                                                                               >  3:58283/1‑148 (MQ=255)                               taGCGGCCTTCCGGCCTACCACCTGGCCAAACACCGGATTTTCCGCGGTACCCGCCAGGTGGTGGTCAACCGCCAGGACGCCCTGAGCCGGCCGCTGCCGGTGGAAGGCCGTCCATGCTGGACCTTCGGCCTCAACCCGCCCGACTTc                                                                                                              <  5:107909/148‑1 (MQ=255)                                  cGGCCTTCCGGCCTACCACCTGGCCAAACACCGGATTTTCCGCGGTGCCCGCCAGGTGGTGGTCAACCGCCAGGACGCCCTGAGCCGGCCGCTGCCGGTGGAAGGCCGTCCATGCTGGACCTTCGGCCTCAACCCGCCCGACTTCAAAg                                                                                                          <  5:262229/149‑1 (MQ=255)                                   ggCCTTCCGGCCTACCACCTGGCCAAACACCGGATTTTCCGCGGTGCCCGCCAGGTGGTGGTCAACCGCCAGGACGCCCTGAGCCGGCCGCTGCCGGTGGAAGGCCGTCCATGCTGGACCTTCGGCCTCAACCCGCCCGACTTCAAAGc                                                                                                         <  1:165023/149‑1 (MQ=255)                                         ccGGCCTACCACCTGGCCAAACACCGGATTTTCCGCGGTGCCCGCCAGGTGGTGGTCAACCGCCAGGACGCCCTGAGCCGGCCGCTGCCGGTGGAAGGCCGTCCATGCTGGACCTTCGGCCTCAACCGGCCCGACTTCAAAGCGttt                                                                                                     <  4:58283/147‑1 (MQ=255)                                         ccGGCCTACCACCTGGCCAAACACCGGATTTTCCGCGGTGCCCGCCAGGTGGTGGTCAACCGCCAGGACGCCCTGAGCCGGCCGCTGCCGGTGGAAGGCCGTCCATGCTGGACCTTCGGCCTCAACCCGCCCGACTTCAAAGCGttt                                                                                                     <  2:21626/147‑1 (MQ=255)                                         ccGGCCTACCACCTGGCCAAACACCGGATTTTCCGCGGTGCCCGCCAGGTGGTGGTCAACCGCCAGGACGCCCTGAGCCGGCCGCTGCCGGTGGAAGGCCGTCCATGCTGGACCTTCGGCCTCAACCCGCCCGACTTCAAAGCGttt                                                                                                     <  2:17452/147‑1 (MQ=255)                                           ggCCTACCACCTGGCCAAACACCGGATTTTCCGCGGTGCCCGCCAGGTGGTGGTCAACCGCCAGGACGCCCTGAGCCGGCCGCTGCCGGTGGAAGGCCGTCCATGCTGGACCTTCGGCCTCAACCCGCCCGACTTCAAAGCGTTTGGcc                                                                                                 >  1:81106/1‑149 (MQ=255)                                                 ccaccTGGCCAAACACCGGATTTTCCGCGGTGCCCGCCAGGTGGTGGTCAACCGCCAGGACGCCCTGAGCCGGCCGCTGCCGGTGGAAGGCCGTCCATGCTGGACCTTCGGCCTCAACCCGCCCGACTTCAAAGCGTTTGGCCTGCGTg                                                                                           <  4:237466/149‑1 (MQ=255)                                                  caccTGGCCAAACACCGGATTTTCCGCGGTGCCCGCCAGGTGGTGGTCAACCGCCAGGACGCCCTGAGCCGGCCGCTGCCGGTGGAAGGCCGTCCATGCTGGACCTTAGGCCTCAACCCGCCCGACTTCAAAGCGTTGGGCCTGAGtt                                                                                           >  8:107932/1‑147 (MQ=255)                                                   accTGGCCAAACACCGGATTTTCCGCGGTGCCCGCGAGGTGGTGGTCAACCGCCAGGACGCCCTGAGCCGGCCGCTGCCGGTGGAAGGCCGTCCATGCTGGACCTTCGGCCTCAACCCGCCCGACTTCAAAGCGTTTGGCCTGCGTGaa                                                                                         <  5:205412/149‑1 (MQ=255)                                                    ccTGGCCAAACACCGGATTTTCCGCGGTGCCCGCCAGGTGGTGGTCAACCGCCAGGACGCCCTGAGCCGGCCGCTGCCGGTGGAAGGCCGTCCATGCTGGACCTTCGGCCTCAACCCGCCCGACTTCAAAGCgat                                                                                                      >  1:227217/1‑133 (MQ=255)                                                    ccTGGCCAAACACCGGATTTTCCGCGGTGCCCGCCAGGTGGTGGTCAACCGCCAGGACGCCCTGAGCCGGCCGCTGCCGGTGGAAGGCCGTCCATGCTGGACCTTCGGCCTCAACCCGCCCGACTTCAAAGCGtt                                                                                                      <  2:227217/135‑1 (MQ=255)                                                        gCCAAACACCGGATTTTCCGCGGTGCCCGCCAGGTGGTGGTCAACCGCCAGGACGCCCTGAGCCGGCCGCTGCCGGTGGAAGGCCGTCCATGCTGGACCTTCGGCCTCAACCCGCCCGACTTCAAAGCGTTTGGCCTGCGTGAAGTGGa                                                                                    >  5:205729/1‑149 (MQ=255)                                                                ccGGATTTTCCGCGGTGCCCGCCAGGTGGTGGTCAACCGCCAGGACGCCCTGAGCCGGCCGCTGCCGGTGGAAGGCCGTCCATGCTGGACCTTCGGCCTCAACCCGCCCGACTTCAAAGCGTTTGGCCTGCGTGAAGTGGACGGTgag                                                                             >  2:61166/1‑148 (MQ=255)                                                                     ttttCCGCGGTGCCCGCCAGGTGGTGGTCAACCGCCAGGACGCCCTGAGCCGGCCGCTGCCGGTGGAAGGCCGTCCATGCTGGACCTTCGGCCTCAACCCGCCCGACTTCAAAGCGTTTGGCCTGCGTGAAGTGGACGGTGAGAAATAc                                                                       <  2:138364/149‑1 (MQ=255)                                                                        tCCGCTGTGCCCGCCAGGTGGTGGTCAACCGCCAGGACGCCCTGAGCCGGCCGCTGCCGGTGGAAGGCCGTCCATGCTGGACCTTCGGCCTCAACCCGCCCGACTTCAAAGCGTTTGGCCTGCGTGAAGTGGACGGTGAGAAATACCt                                                                     <  5:166871/148‑1 (MQ=255)                                                                                 cccTCCAGGTGGTGGTCAACCGCCAGGACGCCCTGAGCCGGCCGCTGCCGGTGGAAGGCCGTCCATGCTGGACCTTCGGCCTCAACCCGCCCGACTTCAAAGCGTTTGGCCTGCGTGAAGTGGACGGTGAGAAATACCTGGCGTTCGa                                                            <  6:205729/148‑1 (MQ=255)                                                                                 cccGCCAGGTGGTGGTCAACCGCCAGGACGCCCTGAGCCGGCCGCTGCCGGTGGAAGGCCGTCCATGCTGGACCTTCGGCCTCAACCCGCCCGACTTCAAAGCGTTTGGCCt                                                                                                <  4:55841/112‑1 (MQ=255)                                                                                 cccGCCAGGTGGTGGTCAACCGCCAGGACGCCCTGAGCCGGCCGCTGCCGGTGGAAGGCCGTCCATGCTGGACCTTCGGCCTCAACCCGCCCGACTTCAAAGCGTTTGGCCt                                                                                                >  3:55841/1‑112 (MQ=255)                                                                                  ccGCCAGGTGGTGGTCAACCGCCAGGACGCCCTGAGCCGGCCGCTGCCGGTGGAAGGCCGTCCATGCTGGACCTTCGGCCTCAACCCGCCCGACTTCAAAGCGTTTGGCCTGCGTGAAGTGGACGGTGAGAAATACCTGGCGTTCGAGt                                                          >  7:238723/1‑149 (MQ=255)                                                                                     ccAGGTGGTGGTCAACCGCCAGGACGCCCTGAGCCGGCCGCTGCCGGTGGAAGGCCGTCCATGCTGGACCTTCGGCCTCAACCCGCCCGACTTCAAAGCGTTTGGCCTGCGTGAAGTGGACGGTGAGAAATACCTGGCGTTCGAGTTcc                                                       <  1:61166/149‑1 (MQ=255)                                                                                     ccAGGTGGTGGTCAACCGCCAGGACGCCCTGAGCCGGCCGCTGCCGGTGGAAGGCCGTCCATGCTGGACCTTCGGCCTCAACCCGCCCGACTTCAAAGCGTTTGGCCTGCGTGAAGTGGACGGTGAGAAATACCTGGCGTTCGAGTTc                                                        >  2:195694/1‑148 (MQ=255)                                                                                               gtCAACCGCCAGGACGCCCTGAGCCGGCCGCTGCCGGTGGAAGGCCGTCCATGCTGGACCTTCGGCCTCAACCCGCCCGACTTCAAAGCGTTTGGCCTGCGTGAAGTGGACGGTGAGAAATACCTGGCGTTCGAGTTCCAGACGCTGAt                                             <  2:81106/149‑1 (MQ=255)                                                                                                    ccGCCAGGACGCCCTGAGCCGGCCGCTGCCGGTGGAAGGCCGTCCATGCTGGACCTTCGGCCTCAACCCGCCCGACTTCAAAGCGTTTGGCCTGCGTGAAGTGGACGGTGAGAAATACCTGGCGTTCGAGTTCCAGACGCTGATGCCgg                                        <  7:25201/149‑1 (MQ=255)                                                                                                     cGCCAGGACGCCCTGAGCCGGCCGCTGCCGGTGGAAGGCcgtcctggcggttgaccaccacctggcgggcaccgcggaaaatccggtgtttggccaggtggtaggccggaaggccgctatagcggtccatgtggtcttcgctgatgtt                                        <  2:194682‑M2/148‑110 (MQ=255)                                                                                                     cGCCAGGACGCCCTGAGCCGGCCGCTGCCGGTGGAAGGCCGTCCATGCTGGACCTTCGGCCTCAACCCGCCCGACTTCAAAGCGTTTGGCCTGCGTGAAGTGGACGGTGAGAAATACCTGGCGTTCGAGTTCCa                                                      <  6:86459/134‑1 (MQ=255)                                                                                                     cGCCAGGACGCCCTGAGCCGGCCGCTGCCGGTGGAAGGCCGTCCATGCTGGACCTTCGGCCTCAACCCGCCCGACTTCAAAGCGTTTGGCCTGCGTGAAGTGGACGGTGAGAAATACCTGGCGTTCGAGTTCCa                                                      >  5:86459/1‑134 (MQ=255)                                                                                                     cGCCAGGACGCCCTGAGCCGGCCGCTGCCGGTGGAAGGCCGTCCATGCTGGACCTTCGGCCTCAACCCGCCCGACTTCAAAGCGTTTGGCCTGCGTGAAGTGGACGGTGAGAAATACCTGGCGTTCGAGTTCCAGACGCTGATGCCGgc                                       >  5:234206/1‑149 (MQ=255)                                                                                                      gCCAGGACGCCCTGAGCCGGCCGCTGCCGGTGGAAGGCcgtcctggcggttgaccaccacctggcgggcaccgcggaaaatccggtgtttggccaggtggtaggccggaaggccgctatagcggtccatgtggtcttcgctgatgt                                         >  6:171358‑M2/1‑38 (MQ=255)                                                                                                      gCCAGGACGCCCTGAGCCGGCCGCTGCCGGTGGAAGGCcgtcctggcggttgaccaccacctggcgggcaccgcggaaaatccggtgtttggccaggtggtaggccggaaggccgctatagcggtccatgtggtcttcgctgatgt                                         <  5:171358‑M2/146‑109 (MQ=255)                                                                                                      gCCAGGACGCCCTGAGCCGGCCGCTGCCGGTGGAAGGCCGTCCATGCTGGACCTTCGGCCTCAACCCGCCCGACTTCAAAGCGTTTGGCCTGCGTGAAGTGGACGGTGAGAAATACCTGGCGTTCGAGTTcc                                                       >  7:204837/1‑132 (MQ=255)                                                                                                      gCCAGGACGCCCTGAGCCGGCCGCTGCCGGTGGAAGGCCGTCCATGCTGGACCTTCGGCCTCAACCCGCCCGACTTCAAAGCGTTTGGCCTGCGTGAAGTGGACGGTGAGAAATACCTGGCGTTCGAGTTcc                                                       <  8:204837/132‑1 (MQ=255)                                                                                                       ccAGGACGCCCTGAGCCGGCCGCTGCCGGTGGAAGGCcgtcctggcggttgaccaccacctggcgggcaccgcggaaaatccggtgtttggccaggtggtaggccggaaggccgctatagcggtccatgtggtcttcgctgatgtt                                        <  5:166580‑M2/146‑110 (MQ=255)                                                                                                              ccgttctgccggccgCTGCCGGTGGAAGTCCGTCCATGCTGGACCTTCGGCCTCAACCCGCCCGACTTCAACGCGTTTGGCCTGCGTGAAGTGGACGGTGAGAAATACCTGGCGTTCGAGTTCCAGACGCTGATGCCGGCGCGTGAAc                               <  7:43445/141‑1 (MQ=255)                                                                                                                   gAGCCGGCCGCTGCCGGTGGAAGGCCGTCCATGCTGGACCTTCGGCCTCAACCCGCCCGACTTCAAAGCGTTTGGCCTGCGTGAAGTGGACGGTGAGAAATACCTGGCGTTCGAGTTCCAGACGCTGATGCCGGCGCGTGAACTGAAgg                         >  8:135072/1‑149 (MQ=255)                                                                                                                      ccggccgCTGCCGGTGGAAGGCCGTCCATGCTGGACCTTCCGCCTCAACCCGCCCGACATCAAAGCGTTTGGACTGCGAGAAGTGGACGGTGAGAAATACCTCGCGTTCGAGTTACAGACGCTGATTCCGGCGCGTGAACtacatcgg                       >  8:43445/1‑141 (MQ=255)                                                                                                                       cggccgCTGCCGGTGGAAGGCCGTCCATGCTGGACCTTCGGCCTCAACCCGCCCGACTTCAAAGCGTTTGGCCTGCGTGAAGTGGACGGTGAGAAATACCTGGCGTTCGAGTTCCAGACGCTGATGCCGGCGCGTGAACTGAAGGTTcg                     >  1:268353/1‑149 (MQ=255)                                                                                                                        ggccgCTGCCGGTGGAAGGCCGTCCATGCTGGACCTTCGGCCTCAACCCGCCCGACTTCAAAGCGTTTGGCCTGCGTGAAGTGGACGGTGAGAAATACCTGGCGTTCGAGTTCCAGACGCTGATGCCGGCGCGTGAACTGAAGGTTcgc                    >  7:87750/1‑149 (MQ=255)                                                                                                                                ccGGTGGAAGGCcgtcctggcggttgaccaccacctggcgggcaccgcggaaaatccggtgtttggccaggtggtaggccggaaggccgctatagcggtccatgtggtcttcgctgatgttcagaacggtcgccacttcggcgttgag             >  6:166580‑M2/1‑12 (MQ=255)                                                                                                                                ccGGTGGAAGGCCGTCCATGCTGGACCTTCGGCCTCAACCCGCCCGACTTCAAAGCGTTTGGCCTGCGTGAAGTGGACGGTGAGAAATACCTGGCGTTCGAGTTCCAGACGCTGATGCCGGCGCGTGAACTGAAGGTTCGCGGTGCt              <  7:135072/147‑1 (MQ=255)                                                                                                                                      gAAGGCCGTCCATGCTGGACCTTCGGCCTCAACCCGCCCGACTTCAAAGCGTTTGGCCTGCGTGAAGTGGACGGTGAGAAATACCTCGCGTTCGAGTTCCAGACGCTGATGCCGGCGCGTGAACTGAAGGTTCGCGGTGCTCACAACCa      <  5:252306/149‑1 (MQ=255)                                                                                                                                           ccGTCCATGCTGGACCTTCGGCCTCAACCCGCCCGACTTCAAAGCGTTTGGCCTGCGTGAAGTGGACGGTGAGAAATACCTGGCGTTCGAGTTCCAGACGCTGATGCCGGCGCGTGAACTGAAGGTTCGCGGTGCTCACAACCAGAGt  >  8:10651/1‑148 (MQ=255)                                                                                                                                           |                                                                                                                                                    GAACATCAGCGAAGACCACATGGACCGCTATAGCGGCCTTCCGGCCTACCACCTGGCCAAACACCGGATTTTCCGCGGTGCCCGCCAGGTGGTGGTCAACCGCCAGGACGCCCTGAGCCGGCCGCTGCCGGTGGAAGGCCGTCCATGCTGGACCTTCGGCCTCAACCCGCCCGACTTCAAAGCGTTTGGCCTGCGTGAAGTGGACGGTGAGAAATACCTGGCGTTCGAGTTCCAGACGCTGATGCCGGCGCGTGAACTGAAGGTTCGCGGTGCTCACAACCAGAGT  >  NC_002947/1521295‑1521580

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.