New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2362137	65 (1.540)	4 (0.100)	3/244	NT	7.7%	coding (1740/2724 nt)	PP_2076	hypothetical protein
	?	NC_002947	3838131 =	34 (0.850)					coding (1726/2673 nt)	PP_3388	hypothetical protein

CCCATGCCGCTGCCAATGCCTTTGGGCGCATCAACACCCTGTACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCTGTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTA  >  NC_002947/3837991‑3838276                                                                                                                                             |                                                                                                                                                  cccATGCCGCCGCCAATGCCTTTGGGCGCATCAACACCCTGTACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCTGTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGAc                                                                                                                                           <  4:82599/149‑1 (MQ=255)       ccGCTGCCAATGCCTTTGGGCGCATCAACACCCTGTACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCTGTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACcgcgcg                                                                                                                                     >  8:30938/1‑149 (MQ=40)          cTGCCAATGCCTTTGGGCGCATCAACACCCTGTACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCTGTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTg                                                                                                                                  >  1:254180/1‑149 (MQ=255)          cTGCCAATGCCTTTGGGCGCATCAACACCCTGTACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCTGTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTg                                                                                                                                  >  2:47977/1‑149 (MQ=255)           tGCCAATGCCTTTGGGCGCATCAACACCCTGTACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCTGTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGc                                                                                                                                 >  4:7248/1‑149 (MQ=255)               aaTGCCTTTGGGCGCATCGACACCCTGTACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCTGTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCa                                                                                                                             <  4:131728/149‑1 (MQ=255)               aaTGCCTTTGGGCGCATCAACACCCTGTACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCTGTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCAc                                                                                                                               >  1:145794/1‑147 (MQ=255)                          gcgcATCAACACCCTGTACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGTCTGTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGc                                                                                                                  >  4:245730/1‑149 (MQ=255)                                      ccTGTACGAACAGATGCAGGCACAGAGCTGCACGGCCAGCATCGGCCTGTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCg                                                                                                      >  1:150183/1‑149 (MQ=255)                                          tACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCTGTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCtt                                                                                                   <  1:47977/148‑1 (MQ=255)                                                     gCAGGCACAGAGCAGCACGGCCAGCATCGGCCTGTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGaaa                                                                                       >  1:45606/1‑149 (MQ=255)                                                             agagCAGCACGGCCAGCATCGGCCTGTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTc                                                                               >  6:148884/1‑149 (MQ=39)                                                              gagCAGCACGGCCAGCATCGGTCTGTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCg                                                                              <  3:245730/149‑1 (MQ=255)                                                              gagCAGCACGGCCAGCATCGGCCTGTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGc                                                                                             <  4:2300/134‑1 (MQ=40)                                                              gagCAGCACGGCCAGCATCGGCCTGTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGc                                                                                             >  3:2300/1‑134 (MQ=40)                                                                   gcaCGGCCAGCATCGGCCTGTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCt                                                                                                    >  5:216020/1‑122 (MQ=40)                                                                   gcaCGGCCAGCATCGGCCTGTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCt                                                                                                    <  6:216020/122‑1 (MQ=40)                                                                         ccAGCATCGGCCTGTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCgg                                                                                                                   <  3:220419/101‑1 (MQ=40)                                                                         ccAGCATCGGCCTGTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCgg                                                                                                                   >  4:220419/1‑101 (MQ=40)                                                                          cAGCATCGGCCTGTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGa                                                                  <  2:150183/149‑1 (MQ=39)                                                                           aGCATCGGCCTGTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAg                                                                 <  5:148884/149‑1 (MQ=39)                                                                             cATCGGCCTGTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGt                                                                >  4:213730/1‑148 (MQ=39)                                                                              aTCGGCCTGTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGGGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCAt                                                                                           >  1:192535/1‑120 (MQ=255)                                                                              aTCGGCCTGTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCAt                                                                                           <  2:192535/120‑1 (MQ=255)                                                                                 ggCCTGTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGc                                                           <  2:145794/149‑1 (MQ=39)                                                                                           ccTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGc                                                 >  1:157931/1‑149 (MQ=39)                                                                                               gTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCgg                                               <  2:45606/147‑1 (MQ=39)                                                                                                 aCGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAg                                           >  6:99418/1‑149 (MQ=39)                                                                                                    tgctgttgggggtggcggtgcgcagcacttgccgccccagcAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCa                                                       <  8:173132‑M2/93‑1 (MQ=255)                                                                                                    tgctgttgggggtggcggtgcgcagcacttgccgccccagcAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCa                                                       >  7:173132‑M2/42‑134 (MQ=255)                                                                                                       tgttgggggtcgcggtgcgcagcacttgccgccccaacAGCATGGACCGCGCACTGCACCAGGGTTTGCGGCTGACCTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGa                                                                  <  3:33291‑M2/82‑1 (MQ=255)                                                                                                           ggggtggcggtgcgcagcacttgccgcccccaacAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACTGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAAcc                                 >  4:143155‑M2/35‑149 (MQ=255)                                                                                                              gcggcAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCca                               >  6:30049/1‑148 (MQ=37)                                                                                                                    aGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAAcgca                        <  3:213730/149‑1 (MQ=37)                                                                                                                        ctgcGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAAcgcagcg                     >  2:255448/1‑148 (MQ=37)                                                                                                                         tgcGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAAcgcagcg                     >  7:42094/1‑147 (MQ=37)                                                                                                                            gcACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGc                <  5:99418/149‑1 (MQ=37)                                                                                                                              aCCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCa              <  5:30049/149‑1 (MQ=37)                                                                                                                                     cccccAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCa       <  3:7248/149‑1 (MQ=34)                                                                                                                                      ccccaacAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATc        >  7:46304‑M2/8‑147 (MQ=255)                                                                                                                                       cccaacAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCcac                              <  6:35061‑M2/118‑1 (MQ=255)                                                                                                                                       cccaacAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCcac                              >  5:35061‑M2/7‑124 (MQ=255)                                                                                                                                       cccaacAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAg     <  7:30938‑M2/143‑1 (MQ=255)                                                                                                                                          aacAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGATTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTa  >  5:122184‑M2/4‑149 (MQ=255)                                                                                                                                             |                                                                                                                                                  CCCATGCCGCTGCCAATGCCTTTGGGCGCATCAACACCCTGTACGAACAGATGCAGGCACAGAGCAGCACGGCCAGCATCGGCCTGTATGCCTGGTACGTCGCGCTGGGGCGGCAAGTGCTGCGCACCGCCACCCCCAACAGCATGGACCGCGCGCTGCACCAGGGTTTGCGGCTGACTTTGTTCGCTTCGGTGCATGAAACGGCTGTCGATATTCGCCTGAGTGAAGCTGCACGTAGCGGGCAGCCCATCAACCCACAACGCAGCGCAGGCCAGGTATCAAGGTA  >  NC_002947/3837991‑3838276

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.