New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2706117	41 (0.970)	4 (0.100)	4/244	NT	9.4%	coding (3274/4188 nt)	PP_2369	leucine‑rich repeat‑containing protein
	?	NC_002947	= 2706191	38 (0.950)					coding (3348/4188 nt)	PP_2369	leucine‑rich repeat‑containing protein

GTGCCGCTTCGCCTGTGGCGGGGCCTGGAGCTGCACGACAATCCACTCTCGGACGAAACCCTGCAGCGCTTGCAGTTGGCCAGGGCGTCGGCCGGGGCCGCTGAGCGGCGACGTGTAGCCCATGCCACTGCGATCCCGAATGCTGCAGCCCCTTGGTTGTCAGGATTCACGCCGGCCCAGCGC‑GAGGTGCGATTGGCGAGCTGGAACCGCTTGAACCAGGAAGCCGGGGCGCAGGATCTGTTCCGCTTTTTCTCTGATTTACGCGCCCTGCGTGAATACGACGCA  >  NC_002947/2706051‑2706335                                                                                                                                             |                                                                                                                                                  gTGCCGCTTCGCCTGTGGCGGGGCCTGGAGCTGCACGACAATCCACTCTCGGACGAAACCCTGCAGCGCTTGCAGTTGGCCAGGGCGTCGGCCGGGGCCGCTGAGCGGCGACGTGTAGCCCATGCCACTGCGATCCCGAATGCTGCAGc                                                                                                                                           <  1:134861/149‑1 (MQ=255)  tGCCGCTTCGCCTGTGGCGGGGCCTGGAGCTGCACGACAATCCACTCTCGGACGAAACCCTGCAGCGCTTGCAGTTGGCCAGGGCGTCGGCCGGGGCCGCTGAGCGGCGACGTGTAGCCCATGCCACTGCGATCCCGAATGCTGCAGcc                                                                                                                                          >  2:269096/1‑149 (MQ=255)    ccGCTTCGCCTGTGGCGGGGCCTGGAGCTGCACGACAATCCACTCTCGGACGAAACCCTGCAGCGCTTGCAGTTGGCCAGGGCGTCGGCCGGGGCCGCTGAGCGGCGTCGTGTAGCCCATGCCACTGCGATCCCGAATGCTGCAGcccc                                                                                                                                        >  5:234237/1‑149 (MQ=255)    ccGCTTCGCCTGTGGCGGGGCCTGGAGCTGCACGACAATCCACTCTCGGACGAAACCCTGCAGCGCTTGCAGTTGGCCAGGGCGTCGGCCGGGGCCGCTGAGCGGCGACGTGTAGCCCATGCCACTGCGATCCCGAATGCTGCAGcccc                                                                                                                                        >  5:94201/1‑149 (MQ=255)                tgGCGGGGCCTGGAGCTGCACGACAATCCACTCTCGGACGAAACCCTGCAGCGCTTGCAGTTGGCCAGGGCGTCGGCCGGGGCCGCTGAGCGGCGACGTGTAGCCCATGCCACTGCGATCCCGAATGCTGCAGCCCCTTGGTTGTCAgg                                                                                                                            <  6:234237/149‑1 (MQ=255)                tgGCGGGGCCTGGAGCTGCACGACAATCCACTCTCGGACGAAACCCTGCAGCGCTTGCAGTTGGCCAGGGCGTCGGCCGGGGCCGCTGAGCGGCGACGTGTAGCCCATGCCACTGCGATCCCGAATGCTGCAGCCCCTTGGTTGTCAg                                                                                                                             >  5:86602/1‑148 (MQ=255)                  gCGGGGCCTGGAGCTGCACGACAATCCACTCTCGGACGAAACCCTGCAGCGCTTGCAGTTGGCCAGGGCGTCGGCCGGGGCCGCTGAGCGGCGACGTGTAGCCCATGCCACTGCGATCCCGAATGCTGCAGCCCCTTGGTTGTc                                                                                                                               >  8:175324/1‑144 (MQ=255)                  gCGGGGCCTGGAGCTGCACGACAATCCACTCTCGGACGAAACCCTGCAGCGCTTGCAGTTGGCCAGGGCGTCGGCCGGGGCCGCTGAGCGGCGACGTGTAGCCCATGCCACTGCGATCCCGAATGCTGCAGCCCCTTGGTTGTc                                                                                                                               <  7:175324/144‑1 (MQ=255)                        ccTGGAGCTGCACGACAATCCACTCTCGGACGAAACCCTGCAGCGCTTGCAGTTGGCCAGGGCGTCGGCCGGGGCCGCTGAGCGGCGACGTGTAGCCCATGCCACTGCGATCCCGAATGCTGCAGCCCCTTGGTTGTCAGGATTCACGc                                                                                                                    <  6:226455/149‑1 (MQ=255)                                     gACAATCCACTCTCGGACGAAACCCTGCAGCGCTTGCAGTTGGCCAGGGCGTCGGCCGGGGCCGCTGAGCGGCGACGTGTAGCCCATGCCACTGCGATCCCGAATGCTGCAGCCCCTTGGTTGTCAGGATTCACGCCGGCCCAGCGC‑Ga                                                                                                      <  3:209319/149‑1 (MQ=255)                                            cACTCTCGGACGAAACCCTGCAGCGCTTGCAGTTGGCCAGGGCGTCGGCCGGGGCCGCTGAGCGGCGACGTGTAGCCCATGCCACTGCGATCCCGAATGCTGCAGCCCCTTGGTTGTCAGGATTCACGCCGGCCCAGCGC‑GAGGTGCg                                                                                                <  7:12650/148‑1 (MQ=255)                                            cACTCTCGGACGAAACCCTGCAGCGCTTGCAGTTGGCCAGGGCGTCGGCCGGGGCCGCTGAGCGGCGACGTGTAGCCCATGCCACTGCGATCCCGAATGCTGCAGCCCCTTGGTTGTCAGGATTCACGCCGGCCCAGCGC‑GAGGTGCGa                                                                                               <  6:94201/149‑1 (MQ=255)                                              ctctCGGACGAAACCCTGCAGCGCTTGCAGTTGGCCAGGGCGTCGGCCGGGGCCGCTGAGCGGCGACGTGTAGCCCATGCCACTGCGATCCCGAATGCTGCAGCCCCTTGGTTGTCAGGATTCACGCCGGCCCAGCGC‑GAGGTGCGAtt                                                                                             <  5:11330/149‑1 (MQ=255)                                               tctcGGACGAAACCCTGCAGCGCTTGCAGTTGGCCAGGGCGTCGGCCGGGGCCGCTGAGCGGCGACGTGTAGCCCATGCCACTGCGATCCCGAATGCTGCAGCCCCTTGGTTGTCAGGATTCACGCCGGCCCAGCGC‑GAGGTGCGATTg                                                                                            >  6:76720/1‑149 (MQ=255)                                                    gACGAAACCCTGCAGCGCTTGCAGTTGGCCAGGGCGTCGGCCGGGGCCGCTGAGCGGCGACGTGTAGCCCATGCCACTGCGATCCCGAATGCTGCAGCCCCTTGGTTGTCAGGATTCACGCCGGCCCAGCGC‑GAGGTGCGATTGGCGAg                                                                                       >  4:47675/1‑149 (MQ=255)                                                        aaaCCCTGCAGCGCTTGCAGTTGGCCAGGGCGTCGGCCGGGGCCGCTGAGCGGCGACGTGTAGCCCATGCCACTGCGATCCCGAATGCTGCAGCCCCTTGGTTGTCAGGATTCACGCCGGCCCAGCGC‑GAGGTGCGATTGGCGAGCTgg                                                                                   <  1:269096/149‑1 (MQ=255)                                                         aaCCCTGCAGCGCTTGCAGTTGGCCAGGGCGTCGGCCGGGGCCGCTGAGCGGCGACGTGTAGCCCATGCCACTGCGATCCCGAATGCTGCAGCCCCTTGGTTGTCAGGATTCACGCCGGCCCAGCGC‑GAGGTGCGATTGGCGAGCTgg                                                                                   >  8:243511/1‑148 (MQ=255)                                                            ccTGCAGCGCTTGCAGTTGGCCAGGGCGTCGGCCGGGGCCGCTGAGCGGCGACGTGTAGCCCATGCCACTGCGATCCCGAATgctgcagggtttcgtccgagagtggattgtcgtgcagctccaggccccgccacaggcgaagcggcac                                                                                <  1:121191‑M2/149‑68 (MQ=255)                                                             cTGCAGCGCTTGCAGTTGGCCAGGGCGTCGGCCGGGGCCGCTGAGCGGCGACGTGTAGCCCATGCCACTGCGATCCCGAATgctgcagggtttcgtccgagagtggattgtcgtgcagctccaggccccgccacaggcgaagcggcac                                                                                <  3:221400‑M2/148‑68 (MQ=255)                                                                    gcTTGCAGTTGGCCAGGGCGTCGGCCGGGGCCGCTGAGCGGCGACGTGTAGCCCATGCCACTGCGATCCCGAATGCTGCAGCCCCTTGGTTGTCAGGATTCACGCCGGCCCAGCGC‑GAGGTGCGATTGGCGAGCTGGAACCGCTTGAAc                                                                       <  3:47675/149‑1 (MQ=255)                                                                       tGCAGTTGGCCAGGGCGTCGGCCGGGGCCTCTGAGCGGCGACGTGTAGCCCATGCCACTGCGATCCCGAATGCTGCAGCCCCTTGGTTGTCAGGATTCACGCCGGCCCAGCGC‑GAGGTGCGATTGGCGAGc                                                                                      >  7:78260/1‑131 (MQ=255)                                                                       tGCAGTTGGCCAGGGCGTCGGCCGGGGCCTCTGAGCGGCGACGTGTAGCCCATGCCACTGCGATCCCGAATGCTGCAGCCCCTTGGTTGTCAGGATTCACGCCGGCCCAGCGC‑GAGGTGCGATTGGCGAGc                                                                                      <  8:78260/131‑1 (MQ=255)                                                                            ttGGCCAGGGCGTCGGCCGGGGCCGCTGAGCGGCGACGTGTAGCCCATGCCACTGCGATCCCGAATGCTGCAGCCCCTTGGTTGTCAGGATTCACGCCGGCCCAGCGC‑GAGGTGCGATTGGCGAGCTGGAACCGCt                                                                            <  1:125652/136‑1 (MQ=255)                                                                            ttGGCCAGGGCGTCGGCCGGGGCCGCTGAGCGGCGACGTGTAGCCCATGCCACTGCGATCCCGAATGCTGCAGCCCCTTGGTTGTCAGGATTCACGCCGGCCCAGCGC‑GAGGTGCGATTGGCGAGCTGGAACCGCt                                                                            >  2:125652/1‑136 (MQ=255)                                                                                ccAGGGCGTCGGCCGGGGCCGCTGAGCGGCGACGTGTAGACCATGCCACTGCGATCCCGAATGCTGCAGCCCCTTGGTTGTCAGGATTCACGCCGGCCCAGCGC‑GAGGTGCGATTGGCGAGCTGGAACCGCTTGAACCAGGAAGCCggg                                                           >  4:256712/1‑149 (MQ=255)                                                                                  aGGGCGTCGGCCGGGGCCGCTGAGCGGCGACGTGTAGCCCATGCCACTGCGATCCCGAATgctgcagggtttcgtccgagagtggattgtcgtgcagctccaggccccgccacaggcgaagcggcactaaagacaacgcttcaggcagc                                                          >  2:121191‑M2/1‑60 (MQ=255)                                                                                      cGTCGGCCGGGGCCGCTGAGCGGCGACGTGTAGCCCATGCCACTGCGATCCCGAATGCTGCAGCCCCTTGGTTGTCAGGATTCACGCCGGCCCAGCGC‑GAGGTGCGATTGGCGAGCTGGAACCGCTTGAACCAGGAAGCCGGGGCGCAg                                                     >  5:77553/1‑149 (MQ=255)                                                                                      cGTCGGCCGGGGCCGCTGAGCGGCGACGTGTAGCCCATGCCACTGCGATCCCGAATGCTGCAGCCCCTTGGTTGTCAGGATTCACGCCGGCCCAGCGC‑GAGGTGCGATTGGCGAGCTGGAACCGCTTGAACCAGGAAGCCGGGGCGCAg                                                     <  7:243511/149‑1 (MQ=255)                                                                                       gTCGGCCGGGGCCGCTGAGCGGCGACGTGTAGCCCATGCCACTGCGATCCCGAATGCTGCAGCCCCTTGGTTGTCAGGATTCACGCCGGCCCAGCGC‑GAGGTGCGATTGGCGAGCTGGAACCGCTTGAACCAGGAAGCCGGGGCGCAg                                                     >  3:131726/1‑148 (MQ=255)                                                                                       gTCGGCCGGGGCCGCTGAGCGGCGACGTGTAGCCCATGCCACTGCGATCCCGAATGCTGCAGCCCCTTGGTTGTCAGGATTCACGCCGGCCCAGCGC‑GAGGTGCGATTGGCGAGCTGGAACCGCTTGAACCAGGAAGCCGGGGCGCAg                                                     >  2:26663/1‑148 (MQ=255)                                                                                             cGGGGCCGCTGAGCGGCGACGTGTAGCCCATGCCACTGCGATCCCGAATGCTGCAGCCCCTTGGTTGTCAGGATTCACGCCGGCCCAGCGC‑GAGGTGCGATTGGCGAGCTGGAACCGCTTGAACCAGGAAGCCGGGGCGCAGGATCTGt                                              <  2:45383/149‑1 (MQ=255)                                                                                             cGGGGCCGCTGAGCGGCGACGTGTAGCCCATGCCACTGCGATCCCGAATGCTGCAGCCCCTTGGTTGTCAGGATTCACGCCGGCCCAGCGC‑GAGCTGCGATTGGCGAGCTGGAACCGCTTGAAcc                                                                      <  8:72704/125‑1 (MQ=255)                                                                                             cGGGGCCGCTGAGCGGCGACGTGTAGCCCATGCCACTGCGATCCCGAATGCTGCAGCCCCTTGGTTGTCAGGATTCACGCCGGCCCAGCGC‑GAGCTGCGATTGGCGAGCTGGAACCGCTTGAAcc                                                                      >  7:72704/1‑125 (MQ=255)                                                                                                  ccGCTGAGCGGCGACGTGTAGCCCATGCCACTGCGATCCCGAATgctgcagggtttcgtccgagagtggattgtcgtgcagctccaggccccgccacaggcgaagcggcactaaagacaacgcttcaggcagcgtctggatctggttgt                                          >  4:221400‑M2/1‑44 (MQ=255)                                                                                                         gcggcgACGTGTAGCCCATGCCACTGCGATCCCGAATGCTGCAGCCCCTTGGTTGTCAGGATTCACGCCGGCCCAGCGC‑GAGGTGCGATTGGCGAGCTGGAACCGCTTGAACCAGGAAGCCGGGGCGCAGGATCTGTTCCGCTTTTtct                                  <  6:86602/149‑1 (MQ=255)                                                                                                             cgACGTGTAGCCCATGCCACTGCGATCCCGAATGCTGCAGCCCCTTGGTTGTCAGGATTCACGCCGGCCCAGCGC‑GAGGTGCGATTGGCGAGCTGGAACCGCTTGAACCAGGAAGCCGGGGCGCAGGATCTGTTCCGCTTTTTCTCTGa                              <  5:76720/149‑1 (MQ=255)                                                                                                                  tgtAGCCCATGCCACTGCGATCCCGAATGCTGCAGCCCCTTGGTTGTCAGGATTCACGCCGGCCCAGCGC‑GAGGTGCGATTGGCGAGCTGGAACCGCTTGAACCAGGAAGCCGGGGCGCAGGATCTGTTCCGCTTTTTCTCTGATTTAc                         <  6:77553/149‑1 (MQ=255)                                                                                                                    tAGCCCATGCCACTGCGATCCCGAATGCTGCAGCCCCTTGGTTGTCAGGATTCACGCCGGCCCAGCGC‑GAGGTGCGATTGGCGAGCTGGAACCGCTTGAACCAGGAAGCCGGGGCGCAGGATCTGTTCCGCTTTTTCTCTGATTTAcgc                       >  2:23495/1‑149 (MQ=255)                                                                                                                            gCCACTGCGATCCCGAATGCTGCAGCCCCTTGGTTGTCAGGATTCACGCCGGCCCAGCGC‑GAGGTGCGATTGGCGAGCTGGAACCGCTTGAACCAGGAAGCCGGGGCGCAGGATCTGTTCCGCtttt                                     <  7:160134/127‑1 (MQ=255)                                                                                                                            gCCACTGCGATCCCGAATGCTGCAGCCCCTTGGTTGTCAGGATTCACGCCGGCCCAGCGC‑GACGTGCGATTGGCGAGCTGGAACCGCTTGAACCAGGAAGCCGGGGCGCAGGATCTGTTCCGCtttt                                     >  8:160134/1‑127 (MQ=255)                                                                                                                             ccACTGCGATCCCGAATGCTGCAGCCCCTTGGTTGTCAGGATTCACGCCGGCCCAGCGC‑GAGGTGCGATTGGCGAGCTGGAACCGCTTGAACCAGGAAGCCGGGGCGCAGGATCTGTTCCGCTTTTTCTCTGATTTACGCGCCCTGCGt              <  3:256712/149‑1 (MQ=255)                                                                                                                                cTGCGATCCCGACTGCTGCAGCCCCTTGGTTGTCAGGATTCACGCCGGCCCAGCGC‑GAGGTGCGATTGGCGAGCTGGAACCGCTTGAACCAGGAAGCCGGGGCGCAGGATCTGTTCCGCTTTTTCTCTGATTTACGCGCCCTGCGTGaa           <  7:241056/149‑1 (MQ=255)                                                                                                                                   cGATCCCGAATGCTGCAGCCCCTTGGTTGTCAGGATTCACGCCGGCCCAGCGC‑GAGGTGCGATTGGCGAGCTGGAACCGCTTGAACCAGGAAGCCGGGGCGCAGGATCTGTTCCGCttttt                                    >  7:181882/1‑121 (MQ=255)                                                                                                                                   cGATCCCGAATGCTGCAGCCCCTTGGTTGTCAGGATTCACGCCGGCCCAGCGC‑GAGGTGCGATTGGCGAGCTGGAACCGCTTGAACCAGGAAGCCGGGGCGCAGGATCTGTTCCGCttttt                                    <  8:181882/121‑1 (MQ=255)                                                                                                                                    gATCCCGAATGCTGCAGCCCCTTGGTTGTCAGGATTCACGCCGGCCCAGCGCAGAGGTGCGATTGGCGAGCTGGAACCGCTTGAACCAGGAAGCCGGGGCGCAGGATCTGTTCCGCTTTTTCTCTGATTTACGCGCCCTGCGTGAATac        >  1:66681/1‑149 (MQ=255)                                                                                                                                        ccGAATGCTCCAGAAACTTGGTTGTCAGTATTCACGCCGGCCCAGCGC‑GAGGTGCGATTGGCGAGCTGTAACAGCTTGAACCAGGAAGCCGGGGCGCAGGATATGTTCCGCTTTTTCTCTGATTTACGCGCCCTGGGTGAATacgacg    >  6:230015/1‑148 (MQ=255)                                                                                                                                          gAATGCTGCAGCCCCTTGGTTGTCAGGATTCACGCCGGCCCAGCGC‑GAGGTGCGATTGGCGAGCTGGAACCGCTTGAACCAGGAAGCCGGGGCGCAGGATCTGTTCCGCTTTTTCTCTGATTTACGCGCCCTGCGTGAATACGACGca  >  2:83037/1‑148 (MQ=255)                                                                                                                                             |                                                                                                                                                  GTGCCGCTTCGCCTGTGGCGGGGCCTGGAGCTGCACGACAATCCACTCTCGGACGAAACCCTGCAGCGCTTGCAGTTGGCCAGGGCGTCGGCCGGGGCCGCTGAGCGGCGACGTGTAGCCCATGCCACTGCGATCCCGAATGCTGCAGCCCCTTGGTTGTCAGGATTCACGCCGGCCCAGCGC‑GAGGTGCGATTGGCGAGCTGGAACCGCTTGAACCAGGAAGCCGGGGCGCAGGATCTGTTCCGCTTTTTCTCTGATTTACGCGCCCTGCGTGAATACGACGCA  >  NC_002947/2706051‑2706335

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.