New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3333433 =	29 (0.690)	4 (0.100)	4/246	NT	12.4%	coding (373/705 nt)	PP_2931	hypothetical protein
	?	NC_002947	3333482 =	29 (0.720)					coding (324/705 nt)	PP_2931	hypothetical protein

CCGCAGGTATGGCCCCCAGCGGCTGCAGCTGCTGGAGAAAGTTCATGGCAGCATCCAGGCCGGTGACGTCGGTGTTGACGCACAGGCTGGCGAACGGGTGGCCGCTGCTGTCACGGAAGATTGCCGTGGCACTTCGTAGCGTGCGGCCTTTGAGCGTAGTGGGGTAATCGGGCAGCACCACCGGCTCACGGCCGTGCTGGTCGGCCGAGGCCTGCATCAGTGCCTTGAAACCCTGGTCCTGCTCCGGTGCGGCAAGGATCGGGCTGCCCACGCTGCGGCCGGAAAGATGC  >  NC_002947/3333334‑3333623                                                                                                                                                     |                                                                                                                                              ccggagcaggaccagggtttcaaggcactgatgcaggcctcggccgaccagcacggccgtgagccggtggtgctgcccgattaccccactacgctcaaaGGCCGCTGCTGTCACGGAAGATTGCCGTGGCACTTCGTAGCGTGCGGCCt                                                                                                                                               >  8:76429‑M1/100‑149 (MQ=255) ccGCAGGTATGGCCCCCAGCGGCTGCAGCTGCTGGAGAAAGTTCATGGCAGCATCCAGGCCGGTGACGTCGGTGTTGACGCACAGGCTGGCGAACGGGTGGCCGCTGCTGTCACGGAAGATTGCCGTGGCACTTCGTAGCGTGCGGCCt                                                                                                                                               >  5:141234/1‑149 (MQ=255)     agcaggaccagggtttcaaggcactgatacaggcctcggccgaccagcacggccgtgagccggtggtgctgcccgattaccccactacgctcaaaGGCCGCTGCTGTCACGGAAGATTGCCGTGGCACTTCGTAGCGTGCGGCCTTTGa                                                                                                                                           >  2:13541‑M1/96‑149 (MQ=255)             cccccAGCGGCTGCAGCTGCTGGAGAAAGTTCATGGCAGCATCCAGGCCGGTGACGTCGGTGTTGACGCACAGGCTGGCGAACGGGTGGCCGCTGCTGTCACGGAAGATTGCCGTGGCACTTCGTAGCGTGCGGCCTTTGAGCGTAGTg                                                                                                                                   >  2:17684/1‑149 (MQ=255)             cccccAGCGGCTGCAGCTGCTGGAGAAAGTTCATGGCAGCATCCAGGCCGGTGACGTCGGTGTTGACGCACAGGCTGGCGAACGGATGGCCGCTGCTGTCACGGAAGATTGCCGTGGCACTTCGTAGCGTGCGGCCTTTGAGCGTAGTg                                                                                                                                   <  1:64044/149‑1 (MQ=255)              ccccAGCGGCTGCAGCTGCTGGAGAAAGTTCATGGCAGCATCCAGGCCGGTGACGTCGGTGTTGACGCACAGGCTGGCGAACGGGTGGCCGCTGCTGTCACGGAAGATTGCCGTGGCACTTCGTAGCGTGCGGCCTTTGAGCGTAGTgg                                                                                                                                  <  1:52758/149‑1 (MQ=255)              ccccAGCGGCTGCAGCTGCTGGAGAAAGTTCATGGCAGCATCCAGGCCGGTGACGTCGGTGTTGACGCACAGGCTGGCGAACGGGTGGCCGCTGCTGTCACGGAAGATTGCCGTGGCACTTCGTAGCGTGCGGCCTTTGAGCGNAGTgg                                                                                                                                  <  7:63530/149‑1 (MQ=255)               cccAGCGACTGCAGCTGCTGGAGAAAGTTCATGGCAGCATCCAGGCCGGTGACGTCGGTGTTGACGCACAGGCTGGCGAACGGGTGGCCGCTGCTGTCACGGAAGATTGCCGTGGCACTTCGTAGCGTGCGGCCTTTGAGCGTAGTggg                                                                                                                                 <  6:33485/149‑1 (MQ=255)                      gCTGCAGCTGCTGGAGAAAGTTCATGGCAGCATCCAGGCCGGTGACGTCGGTGTTGACGCACAGGCTGGCGAACGGGTGGCCGCTGCTGTCACGGAAGATTGCCGTGGCACTTCGTAGCGTGCGGCCTTTGAGCGTAGTGGGGTAATCg                                                                                                                          <  5:249155/149‑1 (MQ=255)                         gCAGCTGCTGGAGAAAGTTCATGGCAGCATCCAGGCCGGTGACGTCGGTGTTGACGCACAGGCTGGCGAACGGGTGGCCGCTGCTGTCACGGAAGATTGCCGTGGCACTTCGTAGCGTGCGGCCTTTGAGCGTAGTGGGGTAATCggg                                                                                                                        >  8:176608/1‑148 (MQ=255)                           aGCTGCTGGAGAAAGTTCATGGCAGCATCCAGGCCGGTGACGTCGGTGTTGACGCACAGGCTGGCGAACGGGTGGCCGCTGCTGTCACGGAAGATTGCCGTGGCACTTCGTAGCGTGCGGCCTTTGAGCGTAGTggg                                                                                                                                 <  4:169210/137‑1 (MQ=255)                           aGCTGCTGGAGAAAGTTCATGGCAGCATCCAGGCCGGTGACGTCGGTGTTGACGCACAGGCTGGCGAACGGGTGGCCGCTGCTGTCACGGAAGATTGCCGTGGCACTTCGTAGCGTGCGGCCTTTGAGCGTAGTggg                                                                                                                                 >  3:169210/1‑137 (MQ=255)                                   gagaAAGTTCATGGCAGCATCCAGGCCGGTGACGTCGGTGTTGACGCACAGGCTGGCGAACGGGTGGCCGCTGCTGTCACGGAAGATTGCCGTGGCACTTCGTAGCGTGCGGCCTTTGAGCGTAGTGGGGTAATCggg                                                                                                                        >  1:187432/1‑138 (MQ=255)                                   gagaAAGTTCATGGCAGCATCCAGGCCGGTGACGTCGGTGTTGACGCACAGGCTGGCGAACGGGTGGCCGCTGCTGTCACGGAAGATTGCCGTGGCACTTCGTAGCGTGCGGCCTTTGAGCGTAGTGGGGTAATCggg                                                                                                                        <  2:187432/138‑1 (MQ=255)                                   aggcctcggccgaccagcacggccgtgagccggtggtgctgcccgattaccccactacgctcaaaGGCCGCTGCTGTCACGGAAGATTGCCGTGGCACTTCGTAGCGTGCGGCCTTTGa                                                                                                                                           <  5:135145‑M1/54‑1 (MQ=255)                                     gaAAGTTCATGGCAGCATCCAGGCCGGTGACGTCGGTGTTGACGCACAGGCTGGCGAACGGGTGGCCGCTGCTGTCACGGAAGATTGCCGTGGCACTTCGTAGCGTGCGGCCTTTGAGCGTAGTGGGGTAATCGGGCAGCACCACCGGc                                                                                                           >  6:63903/1‑149 (MQ=255)                                     gaAAGTTCATGGCAGCATCCAGGCCGGTGACGTCGGTGTTGACGCACAGGCTGGCGAACGGGTGGCCGCTGCTGTCACGGAAGATTGCCGTGGCACTTCGTAGCGTGCGGCCTTTGAGCGTAGTGGGGTAATCGGGCAGCACCACCGGc                                                                                                           >  1:118995/1‑149 (MQ=255)                                     gaAAGTTCATGGCAGCATCCAGGCCGGTGACGTCGGTGTTGACGCACAGGCTGGCGAACGGGTGGCCGCTGCTGTCACGGAAGATTGCCGTGGCACTTCGTAGCGTGCGGCCTTTGAGCGTAGTGGGGTAATCGGGCAGCACCACCGGc                                                                                                           <  1:149887/149‑1 (MQ=255)                                                gcagcaTCCAGGCCGGTGACGTCGGTGTTGACGCACAGGCTGGCGAACGGGTGGCCGCTGCTGTCACGGAAGATTGCCGTGGCACTTCGTAGCGTGCGGCCTTTGAGCGTAGTGGGGTAATCGGGCAGCACCACCGGCTCACGGCCGTg                                                                                                <  6:141234/149‑1 (MQ=255)                                                                    gTCGGTGTTGACGCACAGGCTGGCGAACGGGTGGCCGCTGCTGTCACGGAAGATAGCCGTGGCACTTCGTAGCGTGCGGCCTTTGAGCGTAGTGGGGTAATCGGGCAGCACCACCGGCTCACGGCCGTGGTGGTCGGCCGAGGCCTg                                                                              >  1:70150/1‑147 (MQ=255)                                                                         tgtTGACGCACAGGCTGGCGAACGGGTGGCCGCTGCTGTCACGGAAGATTGCCGTGGCACTTCGTAGCGTGCGGCCTTTGAGCGTAGTGGGGTAATCGGGCAGCACCACCGGCTCACGGCCGTGCTGGTCGGCCGAGGCCTGCATCAGt                                                                       >  1:200909/1‑149 (MQ=255)                                                                              aCGCACAGGCTGGCGAACGGGTGGCCGCTGCTGTCACGGAAGATTGCCGTGGCACTTCGTAGCGTGCGGCCTTTGAGCGTAGTGGGGTAATCGGGCAGCACCACCGGCTCACGGCCGTGCTGGTCGGCCGAGGCCTGCATCAGTGCCtt                                                                  <  3:171609/149‑1 (MQ=255)                                                                                            gAACGGGTGGCCGCTGCTGTCACGGAAGATTGCCGTGGCACTTCGTAGCGTGCGGCCTTTGAGCGTAGTGGGGTAATCGGGCAGCACCACCGGCTCACGGCCGTGCTGGTCGGCCGAGGCCTGCATCAGTGCCTTGAAACCCTGGTCCt                                                    <  2:118995/149‑1 (MQ=255)                                                                                               tcaaaggccgcacgctacgaagtgccacggcaatcttccgtgacagcagcggccTTTGAGCGTAGTGGGGTAATCGGGCAGCACCACCGGCTCACGGCCGTGCTGGTCGGCCGAGGCCt                                                                               <  5:135145‑M2/65‑1 (MQ=255)                                                                                               tcaaaggccgcacgctacgaagtgccacggcaatcttccgtgacagcagcggccTTTGAGCGTAGTGGGGTAATCGGGCAGCACCACCGGCTCACGGCCGTGCTGGTCGGCCGAGGCCTGTATCAGTGCCTTGAAACCCTGGTCCTGCt                                                 >  2:13541‑M2/55‑149 (MQ=255)                                                                                                  gTGGCCGCTGCTGTCACGGAAGATTGCCGTGGCACTTCGTAGCGTGCGGCCTTTGAGCGTAGTGGGGTAATCGGGCAGCACCACCGGCTCACGGCCGTGCTGGTCGGCCGAGGCCTGCATCAGTGCCTTGAAACCCTGGTCCTGCTCCg                                              >  2:71954/1‑149 (MQ=255)                                                                                                  gTGGCCGCTGCTGTCACGGAAGATTGCCGTGGCACTTCGTAGCGTGCGGCCTTTGAGCGTAGTGGGGTAATCGGGCAGCACCACCGGCTCACGGCCGTGCTGGTCGGCCGAGGCCTGCATCAGTGCCTTGAAACCCTGGTCCTGCTCCg                                              >  1:261876/1‑149 (MQ=255)                                                                                                   aggccgcacgctacgaagtgccacggcaatcttccgtgacagcagcggccTTTGAGCGTAGTGGGGTAATCGGGCAGCACCACCGGCTCACGGCCGTGCTGGTCGGCCGAGGCCTGCATCAGTGCCTTGAAACCCTGGTCCTGCTCCgg                                             >  8:76429‑M2/51‑149 (MQ=255)                                                                                                               tCACGGAAGATTGCCGTGGCACTTCGTAGCGTGCGGCCTTTGAGCGTAGTGGGGTAATCGGGCAGCACCACCGGCTCACGGCCGTGCTGGTCGGCCGAGGCCTGCATCAGTGCCTTGAAACCCTGGTCCTGCTCCGGTGCGGCAAGGAt                                 <  7:176608/149‑1 (MQ=255)                                                                                                                 gaagtgccacggcaatcttccgtgacagcagcggccTTTGAGCGTAGTGGGGTAATCGGGCAGCACCACCGGCTCACGGCCGTGCTGGTCGGCCGAGGCCTGTATCAGTGCCTTGAAACCCTGGTCCTGCTCCGGTGCGGCAAGGATCg                               <  1:13541‑M2/113‑1 (MQ=255)                                                                                                                 aCGGAAGATTGCCGTGGCACTTCGTAGCGTGCGGCCTTTGAGCGTAGTGGGGTAATCGGGCAGCACCACCGGCTCACGGCCGTGCTGGTCGGCCGAGGCCTGCATCAGTGCCTTGAAACCCTGGTCCTGCTCCGGTGCGGCAAGGATCg                               <  2:200909/149‑1 (MQ=255)                                                                                                                 aCGGAAGATTGCCGTGGCACTTCGTAGCGTGCGGCCTTTGAGCGTAGTGGGGTAATCGGGCAGCACCACCGGCTCACGGCCGTGCTGGTCGGCCGAGGCCTGCATCAGTGCCTTGAAACCCTGGTCCTGCTCCGGTGCGGCAAGGATCg                               <  1:71954/149‑1 (MQ=255)                                                                                                                   ggAAGATTGCCGTGGCACTTCGTAGCGTGCGGCCTTTGAGCGTAGTGGGGTAATCGGGCAGCACCACCGGCTCACGGCCGTGCTGGTCGGCCGAGGCCTGCATCAGTGCCTTGAAACCCTGGTCCTGCTCCGGTGCGGCAAGGATCggg                             <  1:17684/149‑1 (MQ=255)                                                                                                                                  cACTTCGTAGCGTGCGGCCTTTGAGCGTAGTGGGGTAATCGGGCAGCACCACCGGCTCACGGCCGTGCTGGTCGGCCGAGGCCTGCATCAGTGCCTTGAAACCCTGGTCCTGCTCCGGTGCGGCAAGGATCGGGCTGCCCACGCTGCgg              >  5:75064/1‑149 (MQ=255)                                                                                                                                  cACTTCGTAGCGTGCGGCCTTTGAGCGTAGTGGGGTAATCGGGCAGCACCACCGGCTCACGGCCGTGCTGGTCGGCCGAGGCCTGCATCAGTGCCTTGAAACCCTGGTCCTGCTCCGGTGCGGCAAGGATCGGGCTGCCCACGCTGCgg              >  7:187373/1‑149 (MQ=255)                                                                                                                                    cTTCGTAGCGTGCGGCCTTTGAGCGTAGTGGGGTAATCGGGCAGCACCACCGGCTCACGGCCGTGCTGGTCGGCCGAGGCCTGCATCAGTGCCTTGAAACCCTGCTCCTGCTCCGGTGCGGCAAGGATCGGGCTGCCCACGCTGCGGcc            >  8:74119/1‑149 (MQ=255)                                                                                                                                        gTAGCGTGCGGCCTTTGAGCGTAGTGGGGTAATCGGGCAGCACCACCGGCTCACGGCCGTGCTGGTCGGCCGAGGCCTGCATCAGTGCCTTGAAACCCTGGTCCTGCTCCGGTGCGGCAAGGATCGGGCTGCCCACGCTGCGGCCGGaa        <  7:74119/149‑1 (MQ=255)                                                                                                                                              tGCGGCCTTTGAGCGTAGTGGGGTAATCGGGCAGCACCACCGGCTCACGGCCGTGCTGGTCGGCCGAGGCCTGCATCAGTGCCTTGAAACCCTGGTCCTGCTCCGGTGCGGCAAGGATCGGGCTGCCCACGCTGCGGCCGGAAAGATGc  <  2:261876/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                              CCGCAGGTATGGCCCCCAGCGGCTGCAGCTGCTGGAGAAAGTTCATGGCAGCATCCAGGCCGGTGACGTCGGTGTTGACGCACAGGCTGGCGAACGGGTGGCCGCTGCTGTCACGGAAGATTGCCGTGGCACTTCGTAGCGTGCGGCCTTTGAGCGTAGTGGGGTAATCGGGCAGCACCACCGGCTCACGGCCGTGCTGGTCGGCCGAGGCCTGCATCAGTGCCTTGAAACCCTGGTCCTGCTCCGGTGCGGCAAGGATCGGGCTGCCCACGCTGCGGCCGGAAAGATGC  >  NC_002947/3333334‑3333623

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.