New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3723177	46 (1.090)	5 (0.120)	5/252	NT	11.4%	coding (434/927 nt)	PP_3288	universal stress protein family protein
	?	NC_002947	= 3723224	33 (0.800)					coding (481/927 nt)	PP_3288	universal stress protein family protein

CTGATCAAAGAGCTCGAGCATGAGCCTTGGTGGATGCGCGCAATGTTCACTTCGCTGGATATCCAGTTGCTGCGCGAAACGCGAATACCCTTGCACCTGGTACACAAGGCCAGCCATGCGTTGCCACGCAGGGTTCTGGCGGCGGTGGACCTGTCCAGGCCGGAGGATCAGTTTGAAGGCTTCAACGACCAGATCATCAGCGAAGCGCTGAAGCTGACATTGCAGTGCAATGCCCAGATCGAGTTGCTGTACGCCTACGATTTGGG  >  NC_002947/3723077‑3723342                                                                                                                                                    |                                                                                                                       cTGATCAAAGAGCTCGAGCATGAGCCTTGGTGGATGCGCGCAATGTTCACTTCGCTGGATATCCAGTTGCTGCGCGAAACGCGAATACCCTTGCACCTGGTACACAAGGCCAGCCATGCGTTGCCACGCAGGGTTCTGGCGGCGGTGGa                                                                                                                       >  4:29645‑M2/1‑148 (MQ=255)     tCAAAGAGCTCGAGCATGAGCCTTGGTGGATGCGCGCAATGTTCACTTCGCTGGATATCCAGTTGCTGCGCGAAACGCTAATACCCTTGCACCTGGTACACAAGGCCAGCCATGCGTTGCCACGCAGGGTTCTGGCGGCGGTGGACCTg                                                                                                                   >  5:165106/1‑149 (MQ=255)              tCGAGCATGAGCCTTGGTGGATGCGCGCAATGTTCACTTCGCTGGATATCCAGTTGCTGCGCGAAACGCGAATACCCTTGCACCTGGTACACAAGGCCAGCCATGCGTTGCCAAGCAGGGTTCTGGCGGCGGTGGACCTGTCCAGGCCg                                                                                                          >  5:209565/1‑149 (MQ=255)                gAGCATGAGCCTTGGTGGATGCGCGCAATGTTCACTTCGCTGGATATCCAGTTGCTGCGCGAAACGCGAATACCCTTGCACCTGGTACACAAGGCCAGCCATGCGTTGCCACGCAGGGTTCTGGCGGCGGTGGACCTGTCCAGGCCgga                                                                                                        <  2:90062/149‑1 (MQ=255)                  gCATGAGCCTTGGTGGATGCGCGCAATGTTCACTTCGCTGGATATCCAGTTGCTGCGCGAAACGCGAATACCCTTGCACCTGGTACACAAGGCCAGCCATGCGTTGCCACGCAGGGTTCTGGCGGCGGTGGACCTGTCCAGGCCggagg                                                                                                      <  6:158657/149‑1 (MQ=255)                     tGAGCCTTGGTGGATGCGCGCAATGTTCACTTCGCTGGATATCCAGTTGCTGCGCGAAACGCGAATACCCTTGCACCTGGTACACAAGGCCAGCCATGCGTTGCCACGCAGGGTTCTGGCGGCGGTGGAGCTGTCCAGGCCGGAGGATc                                                                                                   <  6:147783/149‑1 (MQ=255)                      gAGCCTTGGTGGATGCGCGCAATGTTCACTTCGCTGGATATCCAGTTGCTGCGCGAAACGCGAATACCCTTGCACCTGGTACACAAGGCCAGCCATGCGTTGCCACGCAGGGTTCTGGCGGCGGTGGACCTGTCCAGGCCGGAGGAt                                                                                                    >  4:189576/1‑147 (MQ=255)                          cTTGGTGGATGCGCGCAATGTTCACTTCGCTGGATATCCAGTTGCTGCGCGAAACGCGAATACCCTTGCACCTGGTACACAAGGCCAGCCATGCGTTGCCACGCAGGGTTCTGGCGGCGGTGGACCTGTCCAGGCCGGAGGATCAGttt                                                                                              >  8:60950/1‑149 (MQ=255)                           ttGGTGGATGCGCGCAATGTTCACTTCGCTGGATATCCAGTTGCTGCGCGAAACGCGAATACCCTTGCACCTGGTACACAAGGCCAGCCATGCGTTGCCACGCAGGGTTCTGGCGGCGGTGGACCTGTCCAGGCCGGAGGATCAGttt                                                                                              >  8:219424/1‑148 (MQ=255)                             ggtggATGCGCGCAATGTTCACTTCGCTGGATATCCAGTTGCTGCGCGAAACGCGAATACCCTTGCACCTGGTACACAAGGCCAGCCATGCGTTGCCACGCAGGGTTCTGGCGGCGGAGGACCTGTCCAGGCCGGAGGATCAGTTTGa                                                                                            <  1:25099/148‑1 (MQ=255)                                ggATGCGCGCAATGTTCACTTCGCTGGATATCCAGTTGCTGCGCGAAACGCGAATACCCTTGCACCTGGTACACAAGGCCAGCCATGCGTTGCCACGCAGGGTTCTGGCGGCGGTGGac                                                                                                                      <  4:108288‑M2/119‑3 (MQ=255)                                ggATGCGCGCAATGTTCACTTCGCTGGATATCCAGTTGCTGCGCGAAACGCGAATACCCTTGCACCTGGTACACAAGGCCAGCCATGCGTTGCCACGCAGGGTTCTGGCGGCGGTGGac                                                                                                                      >  3:108288‑M2/1‑117 (MQ=255)                                         cAATGTTCACTTCGCTGGATATCCAGTTGCTGCGCGAAACGCGAATACCCTTGCACCTGGTACACAAGGCCAGCCATGCGTTGCCACGCAGGGTTCTGGCGGCGGTGGACCTGTCCAGGCCGGAGGATCAGTTTGAAGGCTTCAACGAc                                                                               <  2:28326/149‑1 (MQ=255)                                          aaTGTTCACTTCGCTGGATATCCAGTTGCTGCGCGAAACGCGAATACCCTTGCACCTGGTACACAAGGCCAGCCATGCGTTGCCACGCAGGGTTCTGGCGGCGGTGGACCTGTCCAGGCCGGAGGATCAGTTTGAAGGCTTCAACGAcc                                                                              <  7:219424/149‑1 (MQ=255)                                           aTGTTCACTTCGCTGGATATCCAGTTGCTGCGCGAAACGCGAATACCCTTGCACCTGGTACACAAGGCCAGCCATGCGTTGCCACGCAGGGTTCTGGCGGCGGTGGACCTGTCCAGGCCGGAGGATCAGTTTGAAGGCTTCAACGACCa                                                                             <  5:259393/149‑1 (MQ=255)                                                 aCTTCGCTGGATATCCAGTTGCTGCGCGAAACGCGAATACCCTTGCACCTGGTACACAAGGCCAGCCATGCGTTGCCACGCAGGGTTCTGGCGGCGGTGGACCTGTCCAGGCCGGAGGATCAGTTTGAAGGCTTCAACGACCAGatcat                                                                       <  3:189576/149‑1 (MQ=255)                                                     ctcTGGATATCCAGTTGCTGCGCGAAACGCGAATACCCTTGCACCTGGTACACAAGGCCAGCCATGCGTTGCCACGCAGGGTTCTGGCGGCGGTGGACCTGTCCAGGCCGGAGGATCAGTTTGAAGGCTTCAACGACCAGAtcatca                                                                     <  6:165106/145‑1 (MQ=255)                                                     cGCTGGATATCCAGTTGCTGCGCGAAACGCGAATACCCTTGCACCTGGTACACAAGGCCAGCCATGCGTTGCCACGCAGGGTTCTGGCGGCGGTGGACCTGTCCAGGCCGGAGGATCAGTTTGAAGGCTTCAACGACCAGATCATCAg                                                                    <  3:100616/148‑1 (MQ=255)                                                             atCCAGTTGCTGCGCGAAACGCGAATACCCTTGCACCTGGTACACAAGGCCAGCCATGCGTTGCCACGCAGGGTTCTGGCGGCGGTGGACCTGTCCAGGCCGGAGGATCAGTTTGAAGGCTTCAACGACCAGATCATCAGCGAAGCGCt                                                           >  1:28782/1‑149 (MQ=255)                                                             atCCAGTTGCTGCGCGAAACGCGAATACCCTTGCACATGGTACACAAGGCCAGCCATGCGTTGCCACGCAGGGTTATGGCGGCGGTGGACCTGTCCAGGCCGGAGGATCAGTTTGAAGGCTTCAACGACCAGATAATCAGCGCAGCGCt                                                           >  7:40729/1‑149 (MQ=255)                                                               ccAGTTGCTGCGCGAAACGCGAATACCCTTGCACCTGGTACACAAGGCCAGCCATGCGTTGCCACGCAGGGTTCTGGCGGCGGTGGACCTGTCCAGGCCGGAGGATCAGTTTGAAGGCTTCAACGACCAGATCATCAGCGAAGCGCTg                                                          >  8:143065/1‑148 (MQ=255)                                                                 aGTTGCTGCGCGAAACGCGAATACCCTTGCACCTGGTACACAAGGCCAGCCATGCGTTGCCACGCAGGGTTCTGGCGGCGGTGGACCTGTCCAGGCCGGAGGATCAGTTTGAAGGCTTCAACGACCAGATCATCAGCGAAGCGCTGAAg                                                       >  7:108213/1‑149 (MQ=255)                                                                        gcgcGAAACGCGAATACCCTTGCACCTGGTACACAAGGCCAGCCATGCGTTGCCACGCAGGGTTCTGGCGGCGGTGGACCTGTCCAGGCCGGAGGATCAGTTTGAAGGCTTCAACGACCAGATCATCAGCGAAGCGCTGAAGCTGACAt                                                >  6:88203/1‑149 (MQ=255)                                                                            gAAACGCGAATACCCTTGCACCTGGTACACAAGGCCAGCCATGCGTTGCCACGCAGGGTTCTGGCGGCGGTGGACCTGTCCAGGCCGGAGGATCAGTTTGAAGGCTTCAACGACCAGATCATCAGCGAAGCGCTGAAGCTGACATTGCa                                            <  8:186285/149‑1 (MQ=255)                                                                               aCGCGAATACCCTTGCACCTGGTACACAAGGCCAGCCATGCGTTGCCACGCAGGGTTCTGGCGGCGGTGGACCTGTCCAGGCCGGAGGATCAGTTTGAAGGCTTCAACGACCAGATCATCAGCGAAGCGCTGAAGCTGACATTGCAGTg                                         >  7:84805/1‑149 (MQ=255)                                                                                     aTACCCTTGCACCTGGTACACAAGGCCAGCCATGCGTTGCCACGCAGGGTTCTGGCGGCGGTGGACCTGTCCAGGCCGGAGGATCAGTTTGAAGGCTTCAACGACCAGATCATCAGCGAAGCGCTGAAGCTGACATTGCAGTGCAATGc                                   >  2:204742/1‑149 (MQ=255)                                                                                      tACCCTTGCACCTGGTACACAAGGCCAGCCATGCGTTGCCACGCAGGGTTCTGGCGGCGGTGGACCTGTCCAGGCCGGAGGATCAGTTTGAAGGCTTCAACGACCAGATCATCAGCGAAGCGCTGAAGCTGACATTGCAGTGCAATGcc                                  <  7:143065/149‑1 (MQ=255)                                                                                           ttGCACCTGGTACACAAGGCCAGCCATGCGTTGCCACGCAGGGTTCTGGCGGCGGTGGACCTGTCCAGGCCGGAGGATCAGTTTGAAGGCTTCAACGACCAGATCATCAGCGAAGCGCTGAAGCTGACATTGCAGTGCAATGcc                                  >  5:92670/1‑144 (MQ=255)                                                                                             gCACCTGGTACACAAGGCCAGCCATGCGTTGCCACGCAGGGTTCTGGCGGCGGTGGACCTGTCCAGGCCGGAGGATCAGTTTGAAGGCTTCAACGACCAGATCATCAGCGAAGCGCTGAAGCTGACATTGCAGTGCAATGCCCAGATc                            <  8:108213/148‑1 (MQ=255)                                                                                               aCCTGGTACACAAGGCCAGCCATGCGTTGCCACGCAGGGTTCTGGCGGCGGTGGaccaggtgcaagggtattcgcgtttcgcgcagcaactggatatccagcgaagtgaacattgcgcgcatccaccaaggctcatgctcgagctcttt                         <  3:242097‑M2/149‑96 (MQ=255)                                                                                                 cTGGTACACAAGGCCAGCCATGCGTTGCCACGCAGGGTTCTGGCGGCTGTGGaccaggtgcaagggtattcgcgtttcgcgcagcaactggatatccagcgaagtgaacattgcgcgcatccaccaa                                             <  4:261534‑M2/127‑76 (MQ=255)                                                                                                 cTGGTACACAAGGCCAGCCATGCGTTGCCACGCAGGGTTCTGGCGGCTGTGGaccaggtgcaagggtattcgcgtttcgcgcagcaactggatatccagcgaagtgaacattgcgcgcatccaccaa                                             >  3:261534‑M2/1‑52 (MQ=255)                                                                                                  tGGTACACAAGGCCAGCCATGCGTTGCCACGCAGGGTTCTGGCGGCGGTGGaccaggtgcaagggtattcgcgtttcgcgcagcaactggatatccagcgaagtgaacattgcgcgcatccaccaaggctcatgctcgagctctgtgat                      <  4:159331‑M2/149‑99 (MQ=255)                                                                                                    gTACACAAGGCCAGCCATGCGTTGCCACGCAGGGTTCTGGCGGCGGTGGaccaggtgcaagggtattcgcgtttcgcgcagcaactggatatccagcgaagtgaacattgcgcgcatccaccaaggctcatgctcgagctctttgatca                    >  4:242097‑M2/1‑49 (MQ=255)                                                                                                    gTACACAAGGCCAGCCATGCGTGGCCACGCAGGGTTCTGGCGGCGGGGGACCTGTCCAGGCGGGAGGATCAGTTTGAAGGCTTCAACGACCAGATCATCAGCGAAGCGCTGAAGCTGACATTGCAGTGCAATGCCCAGATCGAGTTg                      <  1:234083/147‑1 (MQ=255)                                                                                                          aaGGCCAGCCATGCGTTGCCACGCAGGGTTCTGGCGGCGGTGGACCTGTCCAGGCCGGAGGATCAGTTTGAAGGCTTCAACGACCAGATCATCAGCGAAGCGCTGAAGCTGACATTGCAGTGCAATGCCCAGATCGAGTTGCTGTACGc              <  2:28782/149‑1 (MQ=255)                                                                                                                    aTGCGTTGCCACGCAGGGTTCTGGCGGCGGTGGACCTGTCCAGGCCGGAGGATCAGTTTGAAGGCtt                                                                                      >  7:211701/1‑67 (MQ=255)                                                                                                                    aTGCGTTGCCACGCAGGGTTCTGGCGGCGGTGGACCTGTCCAGGCCGGAGGATCAGTTTGAAGGCtt                                                                                      <  8:211701/67‑1 (MQ=255)                                                                                                                    aTGCGTTGCCACGCAGGGTTCTGGCGGCGGTGGACCTGTCCAGGCCGGAGGATCAGTTTGAAGGCTTCAACGACCAGATCATCAGCGAAGCGCTGAAGCTGACATTGCAGTGCAATGCCCAGATCGAGTTGCTGTACGCCTACGATTTg    >  7:27394/1‑149 (MQ=255)                                                                                                                     tGCGTTGCCACGCAGGGTTCTGGCGGCGGTTGACCTGTCCAGGCCGGAGGATCTGTTTGAAGGCTTCAACGACCAGATCATCAGCGAAGCGCTGAAGCTGACATTGCAGTGCAATGCCCAGATCGAGTTGCTGTACGCCTACGATTTgg   <  5:195418/149‑1 (MQ=255)                                                                                                                     tGCGTTGCCACGCAGGGTTCTGGCGGCGGTGGACCTGTCCAGGCCGGAGGATCAGTTTGAAGGCTTCAACGACCAGATCATCAGCGAAGCGCTGAAGCTGACATTGCAGTGCAATGCCCAGATCGAGTTGCTGTACGCCTACGATTTgg   <  8:27394/149‑1 (MQ=255)                                                                                                                       cGTTGCCACGCAGGGTTCTGGCGGCGGTGGACCTGTCCAGGCCGGAGGATCAGTTTGAAGGCTTCAACGACCAGATCATCAGCGAAGCGCTGAAGCTGACATTGCAGTGCAATGCCCAGATCGAGTTGCTGTACGCCTACGATTTggg  <  6:209565/148‑1 (MQ=255)                                                                                                                                                    |                                                                                                                       CTGATCAAAGAGCTCGAGCATGAGCCTTGGTGGATGCGCGCAATGTTCACTTCGCTGGATATCCAGTTGCTGCGCGAAACGCGAATACCCTTGCACCTGGTACACAAGGCCAGCCATGCGTTGCCACGCAGGGTTCTGGCGGCGGTGGACCTGTCCAGGCCGGAGGATCAGTTTGAAGGCTTCAACGACCAGATCATCAGCGAAGCGCTGAAGCTGACATTGCAGTGCAATGCCCAGATCGAGTTGCTGTACGCCTACGATTTGGG  >  NC_002947/3723077‑3723342

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.