New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4127932 = | 45 (1.070) | 3 (0.070) | 3/248 | NT | 6.0% | coding (301/651 nt) | htrG | signal transduction protein |
? | NC_002947 | 4127966 = | 51 (1.260) | coding (335/651 nt) | htrG | signal transduction protein |
CAAGTCCGGGCAGAAGCTGACCCTGCTCGGCAGCCAGGGCAATTACAGCCAGGTGCGCGGGCAGAACGGCGATGTGGTGTGGATCCTAAGCAACGACCTGCAGGCAGTGCCCGGGCAGAACGAGCGCCTGCCGTTGCTCGATGCCCAGGTCACCGAACTGACCGGGCAGTTGAAGACCATCGACGACAGCTGGAAGAACCGCGTACAGGGCATGCAGGAAACGCTTGATTCGCGCAAGCAGCTGATTGATGAGTTGGAGGCACGCAACAAGGCACTGAACGAGCAGCTCGAT > NC_002947/4127820‑4128111 | tccaactcatcaatcagctgcttgcgcgaatcaagcgtttcctgcatgccctgtacgcggttcttccagctgtcgtcgatggtcttcaactgcccggtcagttcggtgacctGGGCAGAACGAGCGCCTGCCGTTGCTCGATGCCCAg < 5:192844‑M1/36‑1 (MQ=255) ccaactcatcaatcagctgcttgcgcgaatcaagcgtttcctgcatgccctgtacgcggttcttccagctgtcgtcgatggtcttcaactgcccggtcagttcggtgacctGGGCAGAACGAGCGCCTGCCGTTGCTCGATGCCCAGGt > 2:127298‑M1/112‑149 (MQ=255) aaGTCCGGGCAGAAGCTGACCCTGCTCGGCAGCCAGGGCAATTACAGCCAGGTGCGCGGGCAGAACGGCGATGTGGTGTGGATCCTAAGCAACGACCTGCAGGCAGTGCCCGGGCAGAACGAGCGCCTGCCGTTGCTCGATGCCCAGGt > 3:234942/1‑149 (MQ=255) caactcatcaatcagctgcttgcgcgaatcaagcgtttcctgcatgccctgtacgcggttcttccagctgtcgtcgatggtcttcaactgcccggtcagttcggtgacctGGGCAGAACGAGCGCCTGCCGTTGCTCGATGCCCAg > 6:192844‑M1/111‑146 (MQ=255) gTCCGGGCAGAAGCTGACCCTGCTCGGCAGTCAGGGCAATTACAGCCAGGTGCGCGGGCAGAACGGCGATGTGGTGTGGATCCTAAGCAACGACCTGCAGGCAGTGCCCGGGCAGAACGAGCGCCTGCCGTTGCTCGATGCCCAGGTCa > 7:181917/1‑149 (MQ=255) gTCCGGGCAGAAGCTGACCCTGCTCGGCAGCCAGGGCAATTACAGCCAGGTGCGCGGGCAGAACGGCGATGTGGTGTGGATCCTAAGCAACGACCTGCAGGCAGTGCCCGGGCAGAACGAGCGCCTGCCGTTGCTCGATGCCCAGGTCa < 6:176111/149‑1 (MQ=255) ggCAGAAGCTGACCCTGCTCGGCAGCCAGGGCAATTACAGCCAGGTGCGCGGGCAGAACGGCGATGTGGTGTGGATCCTAAGCAACGACCTGCAGGCAGTGCCCGGGCAGAACGAGCGCCTGCCGTTGCTCGATGCCCAGGTCACCGaa > 6:240183/1‑149 (MQ=255) gCAGAAGCTGACCCTGCTCGGCAGTCAGGGCAATTACAGCCAGGTGCGCGGGCAGAACGGCGATGTGGTGTGGATCCTAAGCAACGACCTGCAGGCAGTGCCCGGGCAGAACGAGCGCCTGCCGTTGCTCGATGCCCAGGTCACCGAAc < 8:181917/149‑1 (MQ=255) gCAGAAGCTGACCCTGCTCGGCAGCCAGGGCAATTACAGCCAGGTGCGCGGGCAGAACGGCGATGTGGTGTGGATCCTAAGCAACGACCTGCAGGCAGTGCCCGGGCAGAACGAGCGCCTGCCGTTGCTCGATGCCCAGGTCACCGAAc < 4:237706/149‑1 (MQ=255) cAGAAGCTGACCCTGCTCGGCAGCCAGGGCAATTACAGCCAGGTGCGCGGGCAGAACGGCGATGTGGTGTGGATCCTAAGCAACGACCTGCAGGCAGTGCCCGGGCAGAACGAGCGCCTGCCGTTGCTCGATGCCCAGGTCACCGAACt < 5:138832/149‑1 (MQ=255) cAGAAGCTGACCCTGCTCGGCAGCCAGGGCAATTACAGCCAGGTGCGCGGGCAGAACGGCGATGTGGTGTGGATCCTAAGCAACGACCTGCAGGCAGTGCCCGGGCAGAACGAGCGCCTGCCGTTGCTCGATGCCCAGGTCACCGAACt < 1:258345/149‑1 (MQ=255) cAGAAGCTGACCCTGCTCGGCAGCCAGGGCAATTACAGCCAGGTGCGCGGGCAGAACGGCGATGTGGTGTGGATCCTAAGCAACGACCTGCAGGCAGTGCCCGGGCAGAACGAGCGCCTGCCGTTGCTCGATGCCCAGGTCACCGAACt < 4:4581/149‑1 (MQ=255) aGAAGCTGACCCTGCTCGGCAGCCAGGGCAATTACAGCCAGGTGCGCGGGCAGAACGGCGATGTGGTGTGGATCCTAAGCAACGACCTGCAGGCAGTGCCCGGGCAGAACGAGCGCCTGCCGTTGCTCGATGCCCAGGTCACCGAACt > 7:35641/1‑148 (MQ=255) gAAGCTGACCCTGCTCGGCAGCCAGGGCAATTACAGCCAGGTGCGCGGGCAGAACGGCGATGTGGTGTGGATCCTAAGCAACGACCTGCAGGCAGTGCCCGGGCAGAACGAGCGCCTGCCGTTGCTCGATGCCCAGGTCACCGAACTGa > 6:105711/1‑149 (MQ=255) cTGCTCGGCAGCCAGGGCAATTACAGCCAGGTGCGCGGGCAGAACGGCGATGTGGTGTGGATCCTAAGCAACGACCTGCAGGCAGTGCCCGGGCAGAACGAGCGCCTGCCGTTGCTCGATGCCCAGGTCACCGAACTGACCGGGCAGtt < 5:240183/149‑1 (MQ=255) gCTCGGCAGCCAGGGCAATTACAGCCAGGTGCGCGGGCAGAACGGCGATGTGGTGTGGATCCTAAGCAACGACCTGCAGGCAGTGCCCGGGCAGAACGAGCGCCTGCCGTTGCTCGATGCCCAGGTCACCGAACTGACCGGGCAGTTg > 8:21315/1‑148 (MQ=255) cTCGGCAGGCAGGGCAATTACAGCCAGGTGCGCGGGCAGAACGGCGATGTGGTGTGGATCCTAAGCAACGACCTGCAGGCAGTGCCCGGGCAGAACGAGCGCCTGCCGTTGCTCGATGCCCAGGTCACCGAACTGACCGGGCAGTTg < 6:227643/147‑1 (MQ=255) ggCAGCCAGGGCAATTACAGCCAGGTGCGCGGGCAGAACGGCGATGTGGTGTGGATCCTAAGCAACGACCTGCAGGCAGTGCCCGGGCAGAACGAGCGCCTGCCGTTGCTCGATGCCCAGGTCACCGAACTGACCGGGCAGTTGAAg < 6:221698/147‑1 (MQ=255) ggCAGCCAGGGCAATTACAGCCAGGTGCGCGGGCAGAACGGCGATGTGGTGTGGATCCTAAGCAACGACCTGCAGGCAGTGCCCGGGCAGAACGAGCGCCTGCCGTTGCTCGATGCCCAGGTCACCGAACTGACCGGGCAGTTGAAGa < 8:35641/148‑1 (MQ=255) ccAGGGCAATTACAGCCAGGTGCGCGGGCAGAACGGCGATGTGGTGTGGATCCTAAGCAACGACCTGCAGGCAGTGCCCGGGCAGAACGAGCGCCTGCCGTTGCTCGATGCCCAGGTCACCGAACTGACCGGGCAGTTGAAGAcc > 8:137891/1‑145 (MQ=255) ccAGGGCAATTACAGCCAGGTGCGCGGGCAGAACGGCGATGTGGTGTGGATCCTAAGCAACGACCTGCAGGCAGTGCCCGGGCAGAACGAGCGCCTGCCGTTGCTCGATGCCCAGGTCACCGAACTGACCGGGCAGTTGAAGAcc < 7:137891/145‑1 (MQ=255) cAGGGCAATTACAGCCAGGTGCGCGGGCAGAACGGCGATGTGGTGTGGATCCTAAGCAACGACCTGCAGGCAGTGCCCGGGCAGAACGAGCGCCTGCCGTTGCTCGATGCCCAGGTCACCGAACTGACCGGGCAGTTGAAGACCATcga < 4:112110/149‑1 (MQ=255) aCAGCCAGGTGCGCGGGCAGAACGGCGATGTGGTGTGGATCCTAAGCAACGACCTGCAGGCAGTGCCCGGGCAGAACGAGCGCCTGCCGTTGCTCGATGCCCAGGTCACCGAACTGACCGGGCAGTTGAAGACCATCGACGACAGCTg > 8:59659/1‑148 (MQ=255) ccAGGTGCGCGGGCAGAACGGCGATGTGGTGTGGATCCTAAGCAACGACCTGCAGGCAGTGCCCGGGCAGAACGAGCGCCTGCCGTTGCTCGATGCCCAGGTCACCGAACTGACCGGGCAGTTGAAGACCATCGACGACAGCTGgaaga > 4:210301/1‑149 (MQ=255) cAGAACGGCGATGTGGTGTGGATCCTAAGCAACGACCTGCAGGCAGTGCCCGGGCAGAACGAGCGCCTGCCGTTGCTCGATGCCCAGGTCACCGAACTGACCGGGCAGTTGAAGACCATCGACGACAGCTGGAAGAACCGCGTACAggg < 2:135714/149‑1 (MQ=255) aGAACGGCGATGTGGTGTGGATCCTAAGCAACGACCTGCAGGCAGTGCCCGGGCAGAACGAGCGCCTGCCGTTGCTCGATGCCCAGGTCACCGAACTGACCGGGCAGTTGAAGACCATCGACGACAGCTGGAAGAACCGCGTACAGGGc < 3:105567/149‑1 (MQ=255) aaCGGCGATGTGGTGTGGATCCTAAGCAACGACCTGCAGGCAGTGCCCGGGCAGAACGAGCGCCTGCCGTTGCTCGATGCCCAGGTCACCGAACTGACCGGGCAGTTGAAGACCATCGACGACAGCTGGAAGAACCGCGTACAg > 4:101659/1‑144 (MQ=255) aaCGGCGATGTGGTGTGGATCCTAAGCAACGACCTGCAGGCAGTGCCCGGGCAGAACGAGCGCCTGCCGTTGCTCGATGCCCAGGTCACCGAACTGACCGGGCAGTTGAAGACCATCGACGACAGCTGGAAGAACCGCGTACAg < 3:101659/144‑1 (MQ=255) gtgtggATCCTAAGCAACGACCTGCAGGCAGTGCCCGGGCAGAACGAGCGCCTGCCGTTGCTCGATGCCCAGGTCACCGAACTGACCGGGCAGTTGAAGACCATCGACGACAGCTGGAAGAACCGCGTACAGGGCATGCAGGAAACGCt < 1:98691/149‑1 (MQ=255) tgtggATCCTAAGCAACGACCTGCAGGCAGTGCCCGGGCAGAACGAGCGCCTGCCGTTGCTCGATGCCCAGGTCACCGAACTGACCGGGCAGTTGAAGACCATCGACGACAGCTGGAAGAACCGCGTACAGGGCATGCAGGAAACGCtt < 7:21315/149‑1 (MQ=255) tCCTAAGCAACGACCTGCAGGCAGTGCCCGGGCAGAACGAGCGCCTGCCGTTGCTCGATGCCCAGGTCACCGACCTGACCGGGCAGTTGAAGACCATCGACGACAGCTGGAAGAACCGCGTACAGGGCATGCAGGAAACGCTTGATTcg > 7:134711/1‑149 (MQ=255) tCCTAAGCAACGACCTGCAGGCAGTGCCCGGGCAGAACGAGCGCCTGCCGTTGCTCGATGCCCAGGTCACCGAACTGACCGGGCAGTTGAAGACCATCGACGACAGCTGGAAGAACCGCGTACAgg > 7:177947/1‑126 (MQ=255) tCCTAAGCAACGACCTGCAGGCAGTGCCCGGGCAGAACGAGCGCCTGCCGTTGCTCGATGCCCAGGTCACCGAACTGACCGGGCAGTTGAAGACCATCGACGACAGCTGGAAGAACCGCGTACAgg < 8:177947/126‑1 (MQ=255) tCCTAAGCAACGACCTGCAGGCAGTGCCCGGGCAGAACGAGCGCCTGCCGTTGCTCGATGCCCAGGTCACCGAACTGACCGGGCAGTTGAAGACCATCGACGACAGCTGGAAGAACCGCGTACAGGGCATGCAGGAAACGCTTGATTcg > 3:165301/1‑149 (MQ=255) aaGCAACGACCTGCAGGCAGTGCCCGGGCAGAACGAGCGCCTGCCGTTGCTCGATGCCCAGGTCACCGAACTGACCGGGCAGTTGAAGACCATCGACGACAGCTGGAAGAACCGCGTACAGGGCATGCAGGAAACGCt < 2:249149/138‑1 (MQ=255) aaGCAACGACCTGCAGGCAGTGCCCGGGCAGAACGAGCGCCTGCCGTTGCTCGATGCCCAGGTCACCGAACTGACCGGGCAGTTGAAGACCATCGACGACAGCTGGAAGAACCGCGTACAGGGCATGCAGGAAACGCt > 1:249149/1‑138 (MQ=255) ccTGCAGGCAGTGCCCGGGCAGAACGAGCGCCTGCCGTTGCTCGATGCCCAGGTCACCGAACTGACCGGGCAGTTGAAGACCATCGACGACAGCTGGAAGAACCGCGTACAGGGCATGCAGGAAACGCTTGATTCGCGCAAGCAGCtga > 5:101973/1‑149 (MQ=255) cTGCAGGCAGTGCCCGGGCAGAACGAGCGCCTGCCGTTGCTCGATGCCCAGGTCACCGAACTGACCGGGCAGTTGAAGACCATCGACGACAGCTGGAAGAACCGCGTACAGGGCATGCAGGAAACGCTTGATTCGCGCAAGCAGCtgat < 5:4906/149‑1 (MQ=255) caggcagTGCCCGGGCAGAACGAGCGCCTGCCGTTGCTCGATGCCCAGGTCACCGAACTGACCGGGCAGTTGAAGACCATCGACGACAGCTGGAAGAAcc > 5:27953/1‑100 (MQ=255) caggcagTGCCCGGGCAGAACGAGCGCCTGCCGTTGCTCGATGCCCAGGTCACCGAACTGACCGGGCAGTTGAAGACCATCGACGACAGCTGGAAGAAcc < 6:27953/100‑1 (MQ=255) caggcagTGCCCGGGCAGAACGAGCGCCTGCCGTTGCTCGATGCCCAGGTCACCGAACTGACCGGGCAGTTGAAGACCATCGACGACAGCTGGAAGAACCGCGTACAGGGCATGCAGGAAACGCTTGATTCGCGCAAGCAGCtgattg < 3:210301/148‑1 (MQ=255) gcagTGCCCGGGCAGAACGAGCGCCTGCCGTTGCTCGATGCCCAGGTCACCGAACTGACCGGGCAGTTGAAGACCATCGACGACAGCTGGAAGAACCGCGTACAGGGCATGCAGGAAACGCTTGATTCGCGCAAGCAGCTGATtgatga < 5:105711/149‑1 (MQ=255) acctgggcatcgagcaacggcaggcgctcgttctgcccAGGTCACCGAACTGACCGGGCAGTTGAAGACCATCGACGACAGCTGGAAGAACCGCGTACAGGGCATGCAGGAAACGCTTGATTCGCGCAAGCAGCTGATTGATGAGTTgg > 2:127298‑M2/39‑149 (MQ=255) cccGGGCAGAACGAGCGCCTGCCGTTGCTCGATGCCCAGGTCACCGAACTGACCGGGCAGTTGAAGACCATCGACGACAGCTGGAAGAACCGCGTACAGGGc > 4:234845/1‑102 (MQ=255) cccGGGCAGAACGAGCGCCTGCCGTTGCTCGATGCCCAGGTCACCGAACTGACCGGGCAGTTGAAGACCATCGACGACAGCTGGAAGAACCGCGTACAGGGc < 3:234845/102‑1 (MQ=255) cccGGGCAGAACGAGCGCCTGCCGTTGCTCGATGCCCAGGTCACCGAACTGACCGGGCAGTTGAAGACCATCGACGACAGCTGGAAGAACCGCGTACAGGGCATGCAGGAAACGCTTGATTCGCGCAAGCAGCTGATTGATGAGTTg > 5:272941/1‑147 (MQ=255) ctgggcatcgagcaacggcaggcgctcgttctgcccAGGTCACCGAACTGACCGGGCAGTTGAAGACCATCGACGACAGCTGGAAGAACCGCGTACAGGGCATGCAGGAAACGCTTGATTCGCGCAAGCAGCTGATTGATGAGTTg > 6:192844‑M2/37‑146 (MQ=255) ctgggcatcgagcaacggcaggcgctcgttctgcccAGGTCACCGAACTGACCGGGCAGTTGAAGACCATCGACGACAGCTGGAAGAACCGCGTACAGGGCATGCAGGAAACGCTTGATTCGCGCAAGCAGCTGATTGATGAGTTGGa < 5:192844‑M2/112‑1 (MQ=255) cGGGCAGAACGAGCGCCTGCCGTTGCTCGATGCCCAGGTCACCGAACTGACCGGGCAGTTGAAGACCATCGACGACAGCTGGAAGAACCGCGTACAGGGCATGCAGGAAACGCTTGATTCGCGCAAGCAGCtgatt < 2:229596/136‑1 (MQ=255) cGGGCAGAACGAGCGCCTGCCGTTGCTCGATGCCCAGGTCACCGAACTGACCGGGCAGTTGAAGACCATCGACGACAGCTGGAAGAACCGCGTACAGGGCATGCAGGAAACGCTTGATTCGCGCAAGCAGCtgatt > 1:229596/1‑136 (MQ=255) cGGGCAGAACGAGCGCCTGCCGTTGCTCGATGCCCAGGTCACCGAACTGACCGGGCAGTTGAAGACCATCGACGACAGCTGGAAGAACCGCGTACAGGGCATGCAGGAAACGCTTGATTCGCGCAAGCAGCTGATTGATGAGTTGGAgg > 8:138564/1‑149 (MQ=255) cGGGCAGAACGAGCGCCTGCCGTTCCTCGATGCCCAGGTCACCGAACTGACCGGGCAGTTGAAGACCATCGACGACAGCTGGAACAACCGCGTACAGGGCATGCAGGAAACGCTTGATTCGCGCAAGAAGCTGATTGATGAGTTGGAgg > 2:12576/1‑149 (MQ=255) GGCAGAACGAGCGCCTGCCGTTGCTCGATGCCCAGGTCACCGAACTGACCGGGCAGTTGAAGACCATCGACGACAGCTGGAAGAACCGCGTACAGGGCATGCAGGAAACGCTTGATTCGCGCAAGCAGCTGATTGATGAGTTGGAGGCa > 8:163859‑M1/1‑149 (MQ=255) aaCGAGCGCCTGCCGTTGCTCGATGCCCAGGTCACCGAACTGACCGGGCAGTTGAAGACCATCGACGACAGCTGGAAGAACCGCGTACAGGGCATGCAGGAAACGCTTGATTCGCGCAAGCAGCtgattgat < 7:207481/132‑1 (MQ=255) aaCGAGCGCCTGCCGTTGCTCGATGCCCAGGTCACCGAACTGACCGGGCAGTTGAAGACCATCGACGACAGCTGGAAGAACCGCGTACAGGGCATGCAGGAAACGCTTGATTCGCGCAAGCAGCtgattgat > 8:207481/1‑132 (MQ=255) aGCGCCTGCCGTTGCTCGATGCCCAGGTCACCGAACTGACCGGGCAGTTGAAGACCATCGACGACAGCTGGAAGAACCGCGTACAGGGCATGCAGGAAACGCTTGATTCGCGCAAGCAGCTGATTGATGAGTTGGAGGCACGCAACAAg < 6:272941/149‑1 (MQ=255) cgcCTGCCGTTGCTCGATGCCCAGGTCACCGAACTGACCGGGCAGTTGAAGACCATCGACGACAGCTGGAAGAACCGCGTACAGGGCATGCAGGAAACGCTTGATTCGCGCAAGCAGCTGATTGATGAGTTGGAGGCACGCAACAAgg > 3:155664/1‑148 (MQ=255) gTTGCTCGATGCCCAGGTCACCGAACTGACCGGGCAGTTGAAGACCATCGACGACAGCTGGAAGAACCGCGTACAGGGCATGCAGGAAACGCTTGATTCGCGCAAGCAGCTGATTGATGAGTTGGAGGCACGCAACAAGGCACTGAACg > 1:147283/1‑149 (MQ=255) gTTGCTCGATGCCCAGGTCACCGAACTGACCGGGCAGTTGAAGACCATCGACGACAGCTGGAAGAACCGCGTACAGGGCATGCAGGAAACGCTTGATTCGCGCAAGCAGCTGATTGATGAGTTGGAGGCACGCAACAAGGCACTGAACg > 7:93833/1‑149 (MQ=255) cccAGGTCACCGAACTGACCGGGCAGTTGAAGACCATCGACGACAGCTGGAAGAACCGCGTACAGGGCATGCAGGAAACGCTTGATTCGCGCAAGCAGCTGATTGATGAGTTGGAGGCACGCAACAAGGCACTGAACGAGCAGCTc < 2:169623‑M2/143‑1 (MQ=255) cccAGGTCACCGAACTGACCGGGCAGTTGAAGACCATCGACGACAGCTGGAAGAACCGCGTACAGGGCATGCAGGAAACGCTTGATTCGCGCAAGCAGCTGATTGATGAGTTGGAGGCACGCAACAAGGCACTGAACGAGCAGCTc > 1:169623‑M2/4‑146 (MQ=255) cccAGGTCACCGAACTGACCGGGCAGTTGAAGACCATCGACGACAGCTGGAAGAACCGCGTACAGGGCATGCAGGAAACGCTTGATTCGCGCAAGCAGCTGATTGATGAGTTGGAGGCACGCAACAAGGCACTGAACGAGCAGCTCGAt < 2:147283‑M2/146‑1 (MQ=255) | CAAGTCCGGGCAGAAGCTGACCCTGCTCGGCAGCCAGGGCAATTACAGCCAGGTGCGCGGGCAGAACGGCGATGTGGTGTGGATCCTAAGCAACGACCTGCAGGCAGTGCCCGGGCAGAACGAGCGCCTGCCGTTGCTCGATGCCCAGGTCACCGAACTGACCGGGCAGTTGAAGACCATCGACGACAGCTGGAAGAACCGCGTACAGGGCATGCAGGAAACGCTTGATTCGCGCAAGCAGCTGATTGATGAGTTGGAGGCACGCAACAAGGCACTGAACGAGCAGCTCGAT > NC_002947/4127820‑4128111 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |