New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4238005 =	47 (1.110)	4 (0.100)	4/244	NT	8.3%	coding (245/1122 nt)	catB	muconate cycloisomerase 1
	?	NC_002947	4238048 =	44 (1.100)					coding (202/1122 nt)	catB	muconate cycloisomerase 1

CCCTGGGCGTCGAGCAAGGCGCTTTCGATGCCGGACTTGGCGAAGGTGTTGCCCTTGGCCAGCTTGTCCAGCTTGAGCATGGCGGCATTGATGTTGTCTGCCGGCAGGCCAATCAACGCTGGGGCGAGGTA‑CGCGTCGATGTTGGCCTTGATCCCTTCGGGGCTTTCGTAGCCATACGCCAGGCCACCGATGGTGGTGGCTTCACCGATGCCTTCCACGCCATCGCTGCAGCGCAGTCGCAATACCACCAGGGTCTGCTGCTGCATGGTGTGCATCGCCAGCTTGTGCGGGCGAATG  >  NC_002947/4237900‑4238196                                                                                                                                                      |                                                                                                                                                     ccctggtgtgattgcgactgcgctgcagcgatggcgtggacggcatcggtgaagccaacaccatctgtggcctggcgtatggctacgaaagcccctaagggatcaAGGCCAATCAACGCTGGGGCGAGGTA‑CGCGTCGATGTTGGCCtt                                                                                                                                                      >  6:62480‑M1/106‑149 (MQ=255)  ccTGGGCGTCGAGCAAGGCGCTTTCGATGCCGGACTTGGCGAAGGTGTTGCCCTTGGCCAGCTTGTCCAGCTTGAGCATGGCGGCATTGATGTTGTCTGCCGGCAGGCCAATCAACGCTGGGGCGAGGTA‑CGCGTCGATGTTGGCCtt                                                                                                                                                      >  7:245080/1‑148 (MQ=255)      gtggtattgcgactgcgctgcatcgatggcgtggaaggcatcggtgaagccaccaccatcggtggcctggcgtatggctacgaaagccccgaagggatcaAGGCCAATCAACGCTGGGGCGAGGTA‑CGCGTCGATGTTGGCCTTGAt                                                                                                                                                   >  3:72427‑M1/101‑147 (MQ=255)            gAGCAAGGCGCTTTCGATGCCGGACTTGGCGAAGGTGTTGCCCTTGGCCAGCTTGTCCAGCTTGAGCATGGCGGCATTGATGTTGTCTGCCGGCAGGCCAATCAACGCTGGGGCGAGGTA‑CGCGTCGATGTTGGCCTTGATCCCTTCgg                                                                                                                                           <  7:249467/149‑1 (MQ=255)             aGCAAGGCGCTTTCGATGCCGGACTTGGCGAAGGTGTTGCCCTTGGCCAGCTTGTCCAGCTTGAGCATGGCGGCATTGATGTTGTCTGCCGGCAGGCCAATCAACGCTGGGGCGAGGTA‑CGCGTCGATGTTGGCCTTGATCCCTTCggg                                                                                                                                          <  8:38955/149‑1 (MQ=255)                   gcgcTTTCGATGCCGGACTTGGCGAAGGTGTTGCCCTTGGCCAGCTTGTCCAGCTTGAGCATGGCGGCATTGATGTTGTCTGCCGGCAGGCCAATCAACGCTGGGGCGAGGTA‑CGCGTCGATGTTGGCCTTGATCCCTTCGGGGCTTTc                                                                                                                                    >  7:200294/1‑149 (MQ=255)                    cgcTTTCGATGCCGGACTTGGCGAAGGTGTTGCCCTTGGCCAGCTTGTCCAGCTTGAGCATGGCGGCATTGATGTTGTCTGCCGGCAGGCCAATCAACGCTGGGGCGAGGTA‑CGCGTCGATGTTGGCCTTGATCCCTTCGGGGCTTTCg                                                                                                                                   >  5:41045/1‑149 (MQ=255)                        tgcagcgatggcgtggaaggcatcggtgaagccaccaccatcggtggcctggcgtatggctacgaaagccccgaagggatcaAGGCCAATCAACGCTGGGGCGAGGTA‑CGCGTCGATGTTGGCCTTg                                                                                                                                                     >  6:87777‑M1/83‑127 (MQ=255)                        tgcagcgatggcgtggaaggcatcggtgaagccaccaccatcggtggcctggcgtatggctacgaaagccccgaagggatcaAGGCCAATCAACGCTGGGGCGAGGTA‑CGCGTCGATGTTGGCCTTg                                                                                                                                                     <  5:87777‑M1/45‑1 (MQ=255)                         tCGATGCCGGACTTGGCGAAGGTGTTGCCCTTGGCCAGCTTGTCCAGCTTGAGCATGGCGGCATTGATGTTGTCTGCCGGCAGGCCAATCAACGCTGGGGCGAGGTA‑CGCGTCGATGTTGGCCTTGATCCCTTCGGGGCTTTCGTAg                                                                                                                                <  4:201015/147‑1 (MQ=255)                         tCGATGCCGGACTTGGCGAAGGTGTTGCCCTTGGCCAGCTTGTCCAGCTTGAGCATGGCGGCATTGATGTTGTCTGCCGGCAGGCCAATCAACGCTGGGGCGAGGTA‑CGCGTCGATGTTGGCCTTGATCCCTTCGGGGCTTTCGTAGc                                                                                                                               <  8:200294/148‑1 (MQ=255)                           gATGCCGGACTTGGCGAAGGTGTTTCCCTTGGGCAGCTTGTCCAGGTTGAGCATGGGGTCATTGAGGTTGTCTGCCGGGAGGCCAATCAAAGCTGGGGCGAGGTA‑CGCGTCGATGTTGGCGTTGATCCCTTCGGGGCTTTCGTAGCCa                                                                                                                             <  6:213104/148‑1 (MQ=255)                           gATGCCGGACTTGGCGAAGGTGTTGCCCTTGGCCAGCTTGTCCAGCTTGAGCATGGCGGCATTGATGTTGTCTGCCGGCAGGCCAATCAACGCTGGGGCGAGGTA‑CGCGTCGATGTTGGCCTTGATCCCTTc                                                                                                                                             >  3:24382/1‑132 (MQ=255)                           gATGCCGGACTTGGCGAAGGTGTTGCCCTTGGCCAGCTTGTCCAGCTTGAGCATGGCGGCATTGATGTTGTCTGCCGGCAGGCCAATCAACGCTGGGGCGAGGTA‑CGCGTCGATGTTGGCCTTGATCCCTTc                                                                                                                                             <  4:24382/132‑1 (MQ=255)                           gATGCCGGACTTGGCGAAGGTGTTGCCCTTGGCCAGCTTGTCCAGCTTGAGCATGGCGGCATTGATGTTGTCTGCCGGCAGGCCAATCAACGCTGGGGCGAGGTA‑CGCGTCGATGTTGGCCTTGATCCCTTCGGGGCTTTCGTAGCCa                                                                                                                             <  5:47352/148‑1 (MQ=255)                                cGGACTTGGCGAAGGTGTTGCCCTTGGCCAGCTTGTCCAGCTTGAGCATGGCGGCATTGATGTTGTCTGCCGGCAGGCCAATCAACGCTGGGGCGAGGTA‑CGCGTCGATGTTGGCCTTGATCCCTTCGGGGCTTTCGTAGCCAt                                                                                                                            <  6:31040/144‑1 (MQ=255)                                cGGACTTGGCGAAGGTGTTGCCCTTGGCCAGCTTGTCCAGCTTGAGCATGGCGGCATTGATGTTGTCTGCCGGCAGGCCAATCAACGCTGGGGCGAGGTA‑CGCGTCGATGTTGGCCTTGATCCCTTCGGGGCTTTCGTAGCCAt                                                                                                                            >  5:31040/1‑144 (MQ=255)                                  gACTTGGCGAAGGTGTTGCCCTTGGCCAGCTTGTCCAGCTTGAGCATGGCGGCATTGATGTTGTCTGCCGGCAGGCCAATCAACGCTGGGGCGAGGTA‑CGCGTCGATGTTGGCCTTGATCCCTTCGGGGCTTTCGTAGCCATACGCCAg                                                                                                                     <  8:49991/149‑1 (MQ=255)                                       ggCGAAGGTGTTGCCCTTGGCCAGCTTGTCCAGCTTGAGCATGGCGGCATTGATGTTGTCTGCCGGCAGGCCAATCAACGCTGGGGCGAGGTA‑CGCGTCGATGTTGGCCTTGATCCCTTCGGGGCTTTCGTAGCCATACGCCAGGCCAc                                                                                                                >  4:142694/1‑149 (MQ=255)                                       ggCGAAGGTGTTGCCCTTGGCCAGCTTGTCCAGCTTGAGCATGGCGGCATTGATGTTGTCTGCCGGCAGGCCAATCAACGCTGGGGCGAGGTA‑CGCGTCGATGTTGGCCTTGATCCCTTCGGGGCTTTCGTAGCCATACGCCAGGCCAc                                                                                                                >  6:264231/1‑149 (MQ=255)                                        gCGAAGGTGTTGCCCTTGGCCAGCTTGTCCAGCTTGAGCATGGCGGCATTGATGTTGTCTGCCGGCAGGCCAATCAACGCTGGGGCGAGGTA‑CGCGTCGATGTTGGCCTTGATCCCTTCGGGGCTTTCGTAGCCATACGCCAGGCCAcc                                                                                                               >  7:31962/1‑149 (MQ=255)                                        gCGAAGGTGTTGCCCTTGGCCAGCTTGTCCAGCTTGAGCATGGCGGCATTGATGTTGTCTGCCGGCAGGCCAATCAACGCTGGGGCGAGGTA‑CGCGTCGATGTTGGCCTTGATCCCTTCGGGGCTTTCGTAGCCATACGCCAGGCCAc                                                                                                                <  6:41045/148‑1 (MQ=255)                                            aGGTGTTGCCCTTGGCCAGCTTGTCCAGCTTGAGCATGGCGGCATTGATGTTGTCTGCCGGCAGGCCAATCAACGCTGGGGCGAGGTA‑CGCGTCGATGTTGGCCTTGATCCCTTCGGGGCTTTCGTAGCCATACGCCAGGCCACCGAtg                                                                                                           <  8:245080/149‑1 (MQ=255)                                            aGGTGTTGCCCTTGGCCAGCTTGTCCAGCTTGAGCATGGCGGCATTGATGTTGTCTGCCGGCAGGCCAATCAACGCTGGGGCGAGGTA‑CGCGTCGATGTTGGCCTTGATCCCTTCGGGGCTTTCGTAGCCATACGCCAGGCCACCGAtg                                                                                                           <  5:276619/149‑1 (MQ=255)                                            aGGTGTTGCCCTTGGCCAGCTTGTCCAGCTTGAGCATGGCGGCATTGATGTTGTCTGCCGGCAGGCCAATCAACGCTGGGGCGAGGTA‑CGCGTCGATGTTGGCCTTGATCCCTTCGGGGCTTTCGTAGCCATACGCCAGGCCACCGAtg                                                                                                           <  6:218730/149‑1 (MQ=255)                                             ggTGTTGCCCTTGGCCAGCTTGTCCAGCTTGAGCATGGCGGCATTGATGTTGTCTGCCGGCAGGCCAATCAACGCTGGGGCGAGGTA‑CGCGTCGATGTTGGCCTTGATCCCTTCGGGGCTTTCGTAGCCATACGCCAGGCCACCGAtgg                                                                                                          <  1:12/149‑1 (MQ=255)                                               tgtTGCCCTTGGCCAGCTTGTCCAGCTTGAGCATGGCGGCATTGATGTTGTCTGCCGGCAGGCCAATCAACGCTGGGGCGAGGTA‑CGCGTCGATGTTGGCCTTGATCCCTTCGGGGCTTTCGTAGCCATACGCCAGGCCACCGAtggtg                                                                                                        <  1:142897/149‑1 (MQ=255)                                               tgtTGCCCTTGGCCAGCTTGTCCAGCTTGAGCATGGCGGCATTGATGTTGTCTGCCGGCAGGCCAATCAACGCTGGGGCGAGGTA‑CGCGTCGATGTTGGCCTTGATCCCTTCGGGGCTTTCGTAGCCATACGCCAGGCCACCGAtgg                                                                                                          <  3:57152/147‑1 (MQ=255)                                               tgtTGCCCTTGGCCAGCTTGTCCAGCTTGAGCATGGCGGCATTGATGTTGTCTGCCGGCAGGCCAATCAACGCTGGGGCGAGGTA‑CGCGTCGATGTTGGCCTTGATCCCTTCGGGGCTTTCGTAGCCATACGCCAGGCCACCGAtgg                                                                                                          >  4:57152/1‑147 (MQ=255)                                                     ccTTGGCCAGCTTGTCCAGCTTGAGCATGGCGGCATTGATGTTGTCTGCCGGCAGGCCAATCAACGCTGGGGCGAGGTA‑CGCGTCGATGTTGGCCTTGATCCCTTCGGGGCTTTCGTAGCCATACGCCAGGCCACCGATGGTGGTGGCt                                                                                                  >  3:41055/1‑149 (MQ=255)                                                            cAGCTTGTCCAGCTTGAGCATGGCGGCATTGATGTTGTCTGCCGGCAGGCCAATCAACGCTGGGGCGAGGTA‑CGCGTCGATGTTGGCCTTGATCCCTTCGGGGCTTTCGTAGCCATACGCCAGGCCACCGAtggtggtgg                                                                                                    <  1:33648/140‑1 (MQ=255)                                                            cAGCTTGTCCAGCTTGAGCATGGCGGCATTGATGTTGTCTGCCGGCAGGCCAATCAACGCTGGGGCGAGGTA‑CGCGTCGATGTTGGCCTTGATCCCTTCGGGGCTTTCGTAGCCATACGCCAGGCCACCGAtggtggtgg                                                                                                    >  2:33648/1‑140 (MQ=255)                                                              gCTTGTCCAGCTTGAGCATGGCGGCATTGATGTTGTCTGCCGGCAGGCCAATCAACGCTGGGGCGAGGTA‑CGCGTCGATGTTGGCCTTGATCCCTTCg                                                                                                                                            >  1:116729/1‑98 (MQ=255)                                                              gCTTGTCCAGCTTGAGCATGGCGGCATTGATGTTGTCTGCCGGCAGGCCAATCAACGCTGGGGCGAGGTA‑CGCGTCGATGTTGGCCTTGATCCCTTCg                                                                                                                                            <  2:116729/98‑1 (MQ=255)                                                                             tcATGGCGGCATTGATGGTGTCTGCCGGCAGGCCAATCAACGCTGGGGCGTCTTATCGCGTCGAAGTTGGCCTTGATCCCTTCGGGGCTTTCGTAGCCATACGCCAGGCCACCGATGGTGGTGGCTTCACCGATGCCTTCCACGCCATc                                                                           <  1:86618/148‑1 (MQ=255)                                                                                 ggcggcATTGATGTTGTCTGCCGGCAGGCCAATCAACGCTGGGGCGAGGTA‑CGCGTCGATGTTGGCCTTGATCCCTTCGGGGCTTTCGTAGCCATACGCCAGGCCACCGATGGTGGTGGCTTCACCGATGCCtt                                                                                     >  6:136596/1‑134 (MQ=255)                                                                                 ggcggcATTGATGTTGTCTGCCGGCAGGCCAATCAACGCTGGGGCGAGGTA‑CGCGTCGATGTTGGCCTTGATCCCTTCGGGGCTTTCGTAGCCATACGCCAGGCCACCGATGGTGGTGGCTTCACCGATGCCtt                                                                                     <  5:136596/134‑1 (MQ=255)                                                                                  gcggcATTGATGTTGTCTGCCGGCAGGCCAATCAACGCTGGGGCGAGGTA‑CGCGTCGATGTTGGCCTTGATCCCTTCGGGGCTTTCGTAGCCATACGCCAGGCCACCGATGGTGGTGGCTTCACCGATGCCTTCCACGCCATCGCTGc                                                                      <  3:142694/148‑1 (MQ=255)                                                                                       aTTGATGTTGGCTGCCGGCAGGCCAATCAACGCTGGGGCGAGGTA‑CGCGTCGATGTTGGCCTTGATCCCTTCGGGGCTTTCGTAGCCATACGCCAGGCCACCGATGGTGGTGGCTTCACCGATGCCTTCCACGCCATCGCTGCAGCGCa                                                                <  4:202642/149‑1 (MQ=255)                                                                                           aTGTTGTCTGCCGGCAGGCCAATCAACGCTGGGGCGAGGTA‑CGCGTCGATGTTGGCCTTGATCCCTTCGGGGCTTTCGTAGCCATACGCCTGGCCACCGATGGTGGTGGCTTCACCGATGCCTTCCACGCCATCGCTGCAGCGCAGTCg                                                            >  2:38477/1‑149 (MQ=255)                                                                                                     ccGGCAGGCCAATCAACGCTGGGGCGAGGTA‑CGCGTCGATGTTGGCCTTGATCCCTTCGGGGCTTTCGTAGCCATACGCCAGGCCACCGATGGTGGTGGCTTCACCGATGCCTTCCACGCCATCGCTGCAGCGCAGTCGCAATaccac                                                   >  6:78958/1‑148 (MQ=255)                                                                                                       atcaaggccaacatcgacgcgtacctcgccccagcgttgattggcctTGATCCCTTCGGGGCTTTCGTAGCCATACGCCAGGCCACCGATGGTGGTGGCTTCACCGATGCCTTCCACGCCATCGATGCAGCGCAGTCGCAATaccac                                                   >  3:72427‑M2/48‑147 (MQ=255)                                                                                                        gCAGGCCAATCAACGCTGGGGCGAGGTA‑CGCGTCGATGTTGGCCTTGATCCCTTCGGGGCTTTCGTAGCCATACGCCAGGCCACCGATGGTGGTGGCTTCACCGATGCCTTCCACGCCATCGCTGCAGCGCAGTCGCAATACCACCAgg                                               >  6:205641/1‑149 (MQ=255)                                                                                                         caaggccaacatcgacgcgtacctcgccccagcgttgattggcctTGATCCCTTCGGGGCTTTCGTAGCCATACGCCAGGCCACCGATGGTGGTGGCTTCACCGATGCCTTCCACGCCATCGCTGCa                                                                     >  6:87777‑M2/46‑127 (MQ=255)                                                                                                         caaggccaacatcgacgcgtacctcgccccagcgttgattggcctTGATCCCTTCGGGGCTTTCGTAGCCATACGCCAGGCCACCGATGGTGGTGGCTTCACCGATGCCTTCCACGCCATCGCTGCa                                                                     <  5:87777‑M2/82‑1 (MQ=255)                                                                                                          aaggccaacatcgacgcgtacctcgccccagcgttgattggcctTGATCCCTTAGGGGCTTTCGTAGCCATACGCCAGGCCACAGATGGTGTTGGCTTCACCGATGCCGTCCACGCCATCGCTGCAGCGCAGTCGCAATCACACCAggg                                              >  6:62480‑M2/45‑149 (MQ=255)                                                                                                                 tCAACGCTGGGGCGAGGTA‑CGCGTCGATGTTGGCCTTGATCCCTTCGGGGCTTTCGTAGCCATACGCCAGGCCACCGATGGTGGTGGCTTCACCGATGCCTTCCACGCCATCGCTGCAGCGCAGTCGCAATACCACCAgg                                               <  3:249488/140‑1 (MQ=255)                                                                                                                 tCAACGCTGGGGCGAGGTA‑CGCGTCGATGTTGGCCTTGATCCCTTCGGGGCTTTCGTAGCCATACGCCAGGCCACCGATGGTGGTGGCTTCACCGATGCCTTCCACGCCATCGCTGCAGCGCAGTCGCAATACCACCAgg                                               >  4:249488/1‑140 (MQ=255)                                                                                                                           ggCGAGGTA‑CGCGTCGATGTTGGCCTTGATCCCTTCGGGGCTTTCGTAGCCATACGCCTGGCCACCGATGGTGGTGGCTTCACCGATGCCTTCCACGCCATCGCTGCAGCGCAGTCGCAATACCACCAGGGTCTGCTGCTGCATGgtgt                            <  1:38477/149‑1 (MQ=255)                                                                                                                           ggCGAGGTA‑CGCGTCGATGTTGGCCTTGATCCCTTCGGGGCTTTCGTAGCCATACGCCAGGCCACCGATGGTGGTGGCTTCACCGATGCCTTCCACGCCATCGCTGCAGCGCAGTCGCAATACCACCAGGGTCTGCTGCTGCATGgtgt                            >  3:104213/1‑149 (MQ=255)                                                                                                                                   a‑CGCGTCGATGTTGGCCTTGATCCCTTCGGGGCTTTCGTAGCCATACGCCAGGCCACCGATGGTGGTGGCTTCACCGATGCCTTCCACGCCATCGCTGCAGCGCAGTCGCAATACCACCAGGGTCTGCTGCTGCATGGTGTGCATCGc                     >  7:57898/1‑148 (MQ=255)                                                                                                                                        gTCGATGTTGGCCTTGATCCCTTCGGGGCTTTCGTAGCCATACGCCAGGCCACCGATGGTGGTGGCTTCACCGATGCCTTCCACGCCATCGCTGCAGCGCAGTCGCAATCCCACCAGGGTCTGCTGCTGCATGGTGTGCATCGCCAGCt                >  6:223218/1‑149 (MQ=255)                                                                                                                                        gTCGATGTTGGCCTTGATCCCTTCGGGGCTTTCGTAGCCATACGCCAGGCCACCGATGGTGGTGGCTTCACCGATGCCTTCCACGCCATCGCTGCAGCGCAGTCGCAATACCACCAGGGTCTGCTGCTGCATGGTGTGCATCGCCAGCt                >  4:142451/1‑149 (MQ=255)                                                                                                                                          cGATGTTGGCCTTGATCCCTTCGGGGCTTTCGTAGCCATACGACAGGCCACCGATGGTGGTGGCTTCACCGATGCCTTCCACGCCATCGCTGCAGCGCAGTCGCAATACCA‑CAGGGTCTGCTGCTGCATGGTGTGCATCGCCAGCTtgt             >  1:158493/1‑149 (MQ=255)                                                                                                                                           gATGTTGGCCTTGATCCCTTCGGGGCTTTCGTAGCCATACGCCAGGCCACCGATGGTGGTGGCTTCACCGATGCCTTCCACGCCATCGCTGCAGCGCAGTCGCAATACCACCAGGGTCTGCTGCTGCATGGTGTGCATCGCCAGCTtgt             <  5:78958/149‑1 (MQ=255)                                                                                                                                                      tGATCCCTTCGGGGCTTTCGTAGCCATACGCCAGGCCACCGATGGTGGTGGCTTCACCGATGCCTTCCACGCCATCGCTGCAGCGCAGTCGCAATACCACCAGGGTCTGCTGCTGCATGGTGTGCATCGCCAGCTTGTGCGGGCGAATg  >  7:190355/1‑149 (MQ=255)                                                                                                                                                      |                                                                                                                                                     CCCTGGGCGTCGAGCAAGGCGCTTTCGATGCCGGACTTGGCGAAGGTGTTGCCCTTGGCCAGCTTGTCCAGCTTGAGCATGGCGGCATTGATGTTGTCTGCCGGCAGGCCAATCAACGCTGGGGCGAGGTA‑CGCGTCGATGTTGGCCTTGATCCCTTCGGGGCTTTCGTAGCCATACGCCAGGCCACCGATGGTGGTGGCTTCACCGATGCCTTCCACGCCATCGCTGCAGCGCAGTCGCAATACCACCAGGGTCTGCTGCTGCATGGTGTGCATCGCCAGCTTGTGCGGGCGAATG  >  NC_002947/4237900‑4238196

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.