New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4911617 =	39 (0.920)	4 (0.100)	4/246	NT	9.4%	coding (95/1197 nt)	cycH	cytochrome c‑type biogenesis protein
	?	NC_002947	4911645 =	40 (0.990)					coding (67/1197 nt)	cycH	cytochrome c‑type biogenesis protein

CAGCCTCGTCCCGGCCCCTAGCCATCTGCGCCTCATCGAGCACACCGGCGGCTTGTTGGGCCCCCAGTTCGGCGACACGTTCCTGGTAAAGGGCCACGTTCAAGGCCGTGCGGTCTTCTTCCTGC‑TGGCGACGGCGGCCACGCAGGATCGGGAGCAGCAAAAAGCTGAGGGCAGCGAGCAGCAGAAGGCCCGCGCTAAGCCAGAATTCAATCATGGGTCTGTTCTTTTTCCAGCAGTTTGGCGAGACGCTCGCGTTCTTCGGCAGACAACTCATCGGCGCCCTGCACGGCC  >  NC_002947/4911498‑4911788                                                                                                                                                     |                                                                                                                                                tctgccgaagaacgcgagcgtctcgccaaactgctggaaaaagaacagacccatgattgaattctggcttagcgcgggccttctgctgctcgctgccctcagctttttgctgctcccgaTCCTGC‑TGGCGACGGCGGCCACGCAGGAt                                                                                                                                                 >  1:130008‑M1/120‑148 (MQ=255)             ggCCCCTAGCCATCTGCGCCTCATCGAGCACACCGGCGGCTTGTTGGGCCCCCAGTTCGGCGACACGTTCCTGGTAAAGGGCCACGTTCAAGGCCGTGCGGTCTTCTTCCTGC‑TGGCGACGGCGGCCACGCAGGATCGGGAGCAGCaa                                                                                                                                     >  6:266578/1‑148 (MQ=255)                 ccTAGCCATCTGCGCCTCATCGAGCACACCGGCGGCTTGTTGGGCCCCCAGTTCGGCGACACGTTCCTGGTAAAGGGCCACGTTCAAGGCCGTGCGGTCTTCTTCCTGC‑TGGCGACGGCGGCCACGCAGGATCGGGAGCAGCAAAAAGc                                                                                                                                >  3:59434/1‑149 (MQ=255)                     gtctcgccaaactgctggaaaaagaacagacccatgattgaattctggcttagcgcgggccttctgctgctcgctgccctcagctttttgctgctcccgatcctgctggcgacggcggccacgcaggaTCGGGAGCAGCAAAAAGCTGa                                                                                                                             <  2:15237‑M2/21‑1 (MQ=255)                     gCCATCTGCGCCTCATCGAGCACACCGGCGGCTTGTTGGGCCCCCAGTTCGGCGACACGTTCCTGGTAAAGGGCCACGTTCAAGGCCGTGCGGTCTTCTTCCTGC‑TGGCGACGGCGGCCACGCAGGATCGGGAGCAGCAAAAAGCTGa                                                                                                                             <  1:10205/148‑1 (MQ=255)                        aTCTGCGCCTCATCGAGCACACCGGCGGCTTGTTGGGCCCCCAGTTCGGCGACACGTTCCTGGTAAAGGGCCACGTTCAAGGCCGTGCGGTCTTCTTCCTGC‑TGGCGACGGCGGCCACGCAGGATCGGGAGCAGCAAAAAGCTGAggg                                                                                                                          >  5:250919/1‑148 (MQ=255)                             cgcgTCATCGAGCACACCGGCGGCTTGTTGGGCCCCCAGTTCGGCGAGACGTTCCTGGTAAAGGGCCACGTTCAAGGCCGTGCGGTCTTCTTCCTGC‑TGGCGACGGCTGCCACGCAGGATCGGGAGCAGCAAAAAGCTGAGGGCAGCGa                                                                                                                    <  1:159038/149‑1 (MQ=255)                               ccTCATCGAGCACACCGGCGGCTTGTTGGGCCCCCAGTTCGGCGACACGTTCCTGGTAAAGGGCCACGTTCAAGGCCGTGCGGTCTTCTTCCTGC‑TGGCGACGGCGGCCACGCAGGATCGGGAGCAGCAAAAAGCTGAGGGCAGCGag                                                                                                                   >  6:56883/1‑148 (MQ=255)                                    ggaaaaagaacagacccatgattgaattctggcttagcgcgggccttctgctgctcgctgccctcagctttttgctgctcccgaTCCTGC‑TGGCGACGGCGGCCACGCAGGATc                                                                                                                                                >  7:142502‑M1/85‑114 (MQ=255)                                    ggaaaaagaacagacccatgattgaattctggcttagcgcgggccttctgctgctcgctgccctcagctttttgctgctcccgaTCCTGC‑TGGCGACGGCGGCCACGCAGGATc                                                                                                                                                <  8:142502‑M1/30‑1 (MQ=255)                                       aGCACACCGGCGGCTTGTTGGGCCCCCAGTTCGGCGACACGTTCCTGGTAAAGGGCCACGTTCAAGGCCGTGCGGTCTTCTTCCTGC‑TGGCGACGGCGGCCACGCAGGATCGGGAGCAGCAAAAAGCTGAGGGCAGCGAGCAGCAGAAg                                                                                                          <  5:266578/149‑1 (MQ=255)                                              cggcggCTTGTTGGGCCCCCAGTTCGGCGACACGTTCCTGGTAAAGGGCCACGTTCAAGGCCGTGCGGTCTTCTTCCTGC‑TGGCGACGGCGGCCACGCAGGATCGGGAGCAGCAAAAAGCTGAGGGCAGCGAGCAGCAGAAGGCCcgcg                                                                                                   >  7:214632/1‑149 (MQ=255)                                                    cTTGTTGGGCCCCCAGTTCGGCGACACGTTCCTGGTAAAGGGCCACGTTCAAGGCCGTGCGGTCTTCTTCCTGC‑TGGCGACGGCGGCCACGCAGGATCGGGAGCAGCAAAAAGCTGAGGGCAGCGAGCAGCAGAAGGCCCGCGCTAAGc                                                                                             >  1:20466/1‑149 (MQ=255)                                                          gggCCCCCAGTTCGGCGACACGTTCCTGGTAAAGGGCCACGTTCAAGGCCGTGCGGTCTTCTTCCTGC‑TGGCGACGGCGGCCACGCAGGATCGGGAGCAGCAAAAAGCTGAGGGCAGCGAGcagcag                                                                                                             >  5:50477/1‑127 (MQ=255)                                                          gggCCCCCAGTTCGGCGACACGTTCCTGGTAAAGGGCCACGTTCAAGGCCGTGCGGTCTTCTTCCTGC‑TGGCGACGGCGGCCACGCAGGATCGGGAGCAGCAAAAAGCTGAGGGCAGCGAGcagcag                                                                                                             <  6:50477/127‑1 (MQ=255)                                                          gggCCCCCAGTTCGGCGACACGTTCCTGGTAAAGGGCCACGTTCAAGGCCGTGCGGTCTTCTTCCTGC‑TGGCGACGGCGGCCACGCAGGATCGGGAGCAGCAAAAAGCTGAGGGCAGCGAGCAGCAGAAGGCCCGCGCTAAGCCa                                                                                           >  7:32717/1‑145 (MQ=255)                                                          gggCCCCCAGTTCGGCGACACGTTCCTGGTAAAGGGCCACGTTCAAGGCCGTGCGGTCTTCTTCCTGC‑TGGCGACGGCGGCCACGCAGGATCGGGAGCAGCAAAAAGCTGAGGGCAGCGAGCAGCAGAAGGCCCGCGCTAAGCCa                                                                                           <  8:32717/145‑1 (MQ=255)                                                              ccccAGTTCGGCGACACGTTCCTGGTAAAGGGCCACGTTCAAGGCCGTGCGGTCTTCTTCCTGC‑TGGCGACGGCGGCCACGCAGGATCGGGagcag                                                                                                                                        >  7:225347/1‑96 (MQ=255)                                                              ccccAGTTCGGCGACACGTTCCTGGTAAAGGGCCACGTTCAAGGCCGTGCGGTCTTCTTCCTGC‑TGGCGACGGCGGCCACGCAGGATCGGGagcag                                                                                                                                        <  8:225347/96‑1 (MQ=255)                                                              ccccAGTTCGGCGACACGTTCCTGGTAAAGGGCCACGTTCAAGGCCGTGCGGTCTTCTTCCTGC‑TGGCGACGGCGGCCACGCAGGATCGGGAGCGGCAAAAAGCTGAGGGCAGCGAGCAGCAGAAGGCCCGCGCTAAGCCAGAATTCaa                                                                                   <  3:217181/149‑1 (MQ=255)                                                              ccccAGTTCGGCGACACGTTCCTGGTAAAGGGCCACGTTCAAGGCCGTGCGGTCTTCTTCCTGC‑TGGCGACGGCGGCCACGCAGGATCGGGAGCAGCAAAAAGCTGAGGGCAGCGAGCAGCAGAAGGCCCGCGCTAAGCCAGAATTCaa                                                                                   >  2:221528/1‑149 (MQ=255)                                                                 cAGTTCGGCGACACGTTCCTGGTAAAGGGCCACGTTCAAGGCCGTGCGGTCTTCTTCCTGC‑TGGCGACGGCGGCCACGCAGGATCGGGAGCAGCAAAAAGCTGAGGGCAGCGAGCAGCAGaa                                                                                                           >  7:173396/1‑122 (MQ=255)                                                                 cAGTTCGGCGACACGTTCCTGGTAAAGGGCCACGTTCAAGGCCGTGCGGTCTTCTTCCTGC‑TGGCGACGGCGGCCACGCAGGATCGGGAGCAGCAAAAAGCTGAGGGCAGCGAGCAGCAGaa                                                                                                           <  8:173396/122‑1 (MQ=255)                                                                     tCGGCGACACGTTCCTGGTAAAGGGCCACGTTCAAGGCCGTGCGGTCTTCTTCCTGC‑TGGCGACGGCGGCCACGCAGGATCGGGAGCAGCAAAAAGCTGAGGGCAGCGAGCAGCAGAAGGCCCGCGCTAAGCCAGAATTCAATCATgg                                                                             <  1:221528/148‑1 (MQ=255)                                                                        gCGACACGTTCCTGGTAAAGGGCCACGTTCAAGGCCGTGCGGTCTTCTTCCTGC‑TGGCGACGGCGGCCACGCAGGATCGGGAGCAGCAAAAAGCTGAGGGCAGCGAGCAGCAGAAGGCCCGCGCTAAGCCAGAATTCAATCATGGGTCt                                                                         >  6:3634/1‑149 (MQ=255)                                                                             acGTTCCTGGTAAAGGGCCACGTTCAAGGCCGTGCGGTCTTCTTCCTGC‑TGGCGACGGCGGCCACGCAGGATCGGGAGCAGCAAAAAGCTGAGGGCAGCGAGCAGCAGAAGGCCCGCGCTAAGCCAGAATTCAATCATGGGTCTGTTCt                                                                    >  5:39568/1‑149 (MQ=255)                                                                               gTTCCTGGTAAAGGGCCACGTTCAAGGCCGTGCGGTCTTCTTCCTGC‑TGGCGACGGCGGCCACGCAGGATCGGGAGCAGCAAAAAGCTGAGGGCAGCGAGCAGCAGAAGGCCCGCGCTAAGCCAGAATTCAATCATGGGTCTGTTCttt                                                                  <  6:250919/149‑1 (MQ=255)                                                                                   cTGGTAAAGGGCCACGTTCAAGGCCGTGCGGTCTTCTTCCTGC‑TGGCGACGGCGGCCACGCAGGATCGGGAGCAGCAAAAAGCTGAGGGCAGCGAGCAGCAGAAGGCCCGCGCTAAGCCAGAATTCAATCATGGGTCTGTTCTTTTTc                                                               <  2:20466/148‑1 (MQ=255)                                                                                    tGGTAAAGGGCCACGTTCAAGGCCGTGCGGTCTTCTTCCTGC‑TGGCGACGGCGGCCACGCAGGATCGGGAGCAGCAAAAAGCTGAGGGCAGCGAGCAGCAGAAGGCCCGCGCTAAGCCAGAATTCAATCATGGGTCTGTACTTTTTc                                                               >  5:51653/1‑147 (MQ=255)                                                                                            ggCCACGATCAAGGCCGTGAGGTCTTCTTCCTGC‑AGGCGACGGCGGCCACGCAGGATCGGGAGCAGCAAAAAGCTGAGGGCAGCCAGCAGCAGAAGGCCCGCGCTAAGCCAGAATTCAATCATGGGTCTGTTCATATTCcagcataatg                                                     >  2:224613/1‑144 (MQ=255)                                                                                              ccACGTTCAAGGCCGTGCGGTCTTCTTCCTGC‑TGGCGACGGCGGCCACGCAGGATCGGGAGCAGCAAAAAGCTGAGGGCAGCGAGCAGCAGAAGGCCCGCGCTAAGCCAGAATTCAATCATGGGTCTGTTCTTTTTCCAGCAGTTTGGc                                                   <  8:214632/149‑1 (MQ=255)                                                                                                   tcagctttttgctgctcccgaTCCTGCGTGGCCGCCGTCGCCA‑GCAGGATCGGGAGCAGCAAAAAGCTGAGGGCAGCGAGCAGCAGAAGGCCCGCGCTAAGCCAGAATTCAATCATGGGTCTGTTCTTTTTCCAGCAGTTTGGCGAGAc                                              <  2:15237‑M1/128‑1 (MQ=255)                                                                                                        ggCCGTGCGGTCTTCTTCCTGC‑TGGCGACGGCGGCCACGCAGGATCGGGAGCAGCAAAAAGCTGAGGGCAGCGAGCAGCAGAAGGCCCGCGCTAAGCCAGAATTCAATCATGGGTCTGTTCTTTTTCCAGCAGTTTGGCGAGACGCTcg                                         >  3:245420/1‑149 (MQ=255)                                                                                                                  tcttctTCCTGC‑TGGCGACGGCGGCCACGCAGGATGGGGAGCAGCAAAAAGCTGAGGGCAGCGAGCAGCAGAAGGCCCGCGCTAAGCCAGAATTCAATCATGGGTCTGTTCTTTTTCCAGCAGTTTGGCGAGACGCTCGCGTTCTTCgg                               <  4:59434/149‑1 (MQ=255)                                                                                                                  tcttctTCCTGC‑TGGCGACGGCGGCCACGCAGGATCGGGAGCAGCAAAAAGCTGAGGGCAGCGAGCAGCAGAAGGCCCGCGCTAAGCCTGAATTCAATCATGGGTCTGTTCTTTTTCCAGCAGTTTGGCGAGACGCTCGCGTTCTTCgg                               >  1:112439/1‑149 (MQ=255)                                                                                                                  tcttctTCCTGC‑TGGCGACGGCGGCCACGCAGGATCGGGAGCAGCAAAAAGCTGAGGGCAGCGAGCAGCAGAAGGCCCGCGCTAAGCCAGAATTCAATCATGGGTCTGTTCTTTTTCCAGCAGTTTGGCgag                                                <  2:131358/132‑1 (MQ=255)                                                                                                                  tcttctTCCTGC‑TGGCGACGGCGGCCACGCAGGATCGGGAGCAGCAAAAAGCTGAGGGCAGCGAGCAGCAGAAGGCCCGCGCTAAGCCAGAATTCAATCATGGGTCTGTTCTTTTTCCAGCAGTTTGGCgag                                                >  1:131358/1‑132 (MQ=255)                                                                                                                  tcttctTCCTGC‑TGGCGACGGCGGCCACGCAGGATCGGGAGCAGCAAAAAGCTGAGGGCAGCGAGCAGCAGAAGGCCCGCGCTAAGCCAGAATTCAATCATGGGTCTGTTCTTTTTCCAGCAGTTTGGCGAGACGCTCGCGTTCTTCgg                               <  5:3634/149‑1 (MQ=255)                                                                                                                  tcttctTAGTGC‑TGGAGACGGCGGACACTATGGATCGGTTCTAGCATAAAGCTGAGTGCAGCGAGCAGCTGAAGGCCCGCGCTAAGCCAGATTTCAATCATGGGTCTGTTCTTTTTCCAGCAGTTTGGCGAGACGCTCGCGTTCTTCgg                               <  1:224613/149‑1 (MQ=255)                                                                                                                  ccttcttCCTGC‑TGGCGACGGCGGCCACGCAGGATCGGGAGCAGCAAAAAGCTGAGTGCAGGGAGCAGCAGAAGGCCCGCGCTAAGCCTGAATTCAATCATGGGTCTGTTCTTTTTCCAGCAGTTTGGCGAGACGCTCGCGTTCTTCg                                <  2:112439/147‑1 (MQ=255)                                                                                                                    ttcttcCTGC‑TGGCGACGTGTGCGACGCAGGATCGGGAGCAGCAAAATGCTGAGGGCAGCGAGAAGAAGTAGGCCCGCTCTAAGCCAGAATTCAATCATGGGTCTGTTGTTTTTCCAGCAGTTTGGCGAGACGCTCGAGTTCTTCGGct                             <  2:124094/149‑2 (MQ=255)                                                                                                                    ttcttcCTGC‑TGGCGACGGCGGGCACGCAGGATCGGGAGCAGCAAAAAGCTGAGGGCAGCGAGCAGCAGAAGGCCCGCGCTAAGCCAGAATTCAATCATGGGTCTGTTCTTTTTCCAGCAGTTTGGCGAGACGCTCGCGTTCTTCgg                               >  7:169500/1‑147 (MQ=255)                                                                                                                    ttcttcCTGC‑TGGCGACGGCGGCCACGCAGGATCGGGAGCAGCAAAAAGCTGAGGGCAGCGAGCAGCAGAAGGCCCGCGCTAAGCCAGAATTCAATCATGGGTCTGTTCTTTTTCCAGCAGTTTGGCGAGACGCTcgc                                        <  4:165325/138‑1 (MQ=255)                                                                                                                    ttcttcCTGC‑TGGCGACGGCGGCCACGCAGGATCGGGAGCAGCAAAAAGCTGAGGGCAGCGAGCAGCAGAAGGCCCGCGCTAAGCCAGAATTCAATCATGGGTCTGTTCTTTTTCCAGCAGTTTGGCGAGACGCTcgc                                        >  3:165325/1‑138 (MQ=255)                                                                                                                       gatcctgcgtggccgccgtcgccagcaggaTCGGGAGCAGCAAAAAGCTGAGGGCAGCGAGCAGCAGAAGGCCCGCGCTAAGCCAGAATTCAATCATGGGTCTGTTCTTTTTcc                                                              >  7:142502‑M2/31‑114 (MQ=255)                                                                                                                       gatcctgcgtggccgccgtcgccagcaggaTCGGGAGCAGCAAAAAGCTGAGGGCAGCGAGCAGCAGAAGGCCCGCGCTAAGCCAGAATTCAATCATGGGTCTGTTCTTTTTcc                                                              <  8:142502‑M2/84‑1 (MQ=255)                                                                                                                        atcctgcgtggccgccgtcgccagcaggaTCGGGAGCAGCAAAAAGCTGAGGGCAGCGAGCAGCAGAAGGCCCGCGCTAAGCCAGAATTCAATCATGGGTCTGTTCTTTTTCCAGCAGTTTGGCGAGACGCTCGCGTTCTTCGGCAGa                           >  1:130008‑M2/30‑148 (MQ=255)                                                                                                                               tgGCGACGGCGGCCACGCAGGATCGGGAGCAGCAAAAAGCTGAGGGCAGCGAGCAGCAGAAGGCCCGCGCTAAGCCAGAATTCAATCATGGGTCTGTTCTTTTTCCAGCAGTTTGGCGAGACGCTCGCGTTCTTCGGCAGACAACTCAt                   >  2:88542/1‑149 (MQ=255)                                                                                                                                           gccagcaggaTCGGGAGCAGCAAAAAGCTGAGGGCAGCGAGCAGCAGAAGGCCCGCGCTAAGCCAGAATTCAATCATGGGTCTGTTCTTTTTCCAGCAGTTTGGCGAGACGCTCGCGTTCTTCGGCAGACAACTCATCGGCGCCCTGc        <  2:130008‑M2/138‑1 (MQ=255)                                                                                                                                              cGCAGGATCGGGAGCAGCAAAATGCTGATGGCAGCGAGCAGCAGAAGGCCCGCGCTAAGCCAGAATTCAATCATGGGTCTGTTCTTTTTCCAGCAGTTTGGCGAGACGCTCGCGTTCTTCGGCAGACAACTCATCGGCGCCCTGCACgg    <  5:250604/149‑1 (MQ=255)                                                                                                                                                caggaTCGGGAGCAGCAAAAAGCTGAGGGCAGCGAGCAGCATAAGGCCCGCGCTAAGCCAGAATTCAATCATGGGTCTGTTCTTTTTCCAGCAGTTTGGCGAGACGCTCGCGTTCTTCGGCAGACAACTCATCGGCGCCCTGCACGGcc  <  1:88542‑M2/144‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                CAGCCTCGTCCCGGCCCCTAGCCATCTGCGCCTCATCGAGCACACCGGCGGCTTGTTGGGCCCCCAGTTCGGCGACACGTTCCTGGTAAAGGGCCACGTTCAAGGCCGTGCGGTCTTCTTCCTGC‑TGGCGACGGCGGCCACGCAGGATCGGGAGCAGCAAAAAGCTGAGGGCAGCGAGCAGCAGAAGGCCCGCGCTAAGCCAGAATTCAATCATGGGTCTGTTCTTTTTCCAGCAGTTTGGCGAGACGCTCGCGTTCTTCGGCAGACAACTCATCGGCGCCCTGCACGGCC  >  NC_002947/4911498‑4911788

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.