New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5245883	48 (1.140)	3 (0.070)	3/246	NT	6.1%	coding (2778/3303 nt)	PP_4623	hypothetical protein
	?	NC_002947	= 5245916	47 (1.170)					coding (2745/3303 nt)	PP_4623	hypothetical protein

ACCACCACGGACGAAATACGCTCGGCAGCGTCGGCGCTGTCTTCAGCGGCTTCGTTGATCATCCGCCTGATACGTTTCTCCAGGTCCTGGACAGGATCCCCGATACGCCCGGTCTCCCCTATCGGCG‑GCCGCACGCCCCTGCCTCGGGCGACGGCATCCAGCACCACCCCAATGCCATCGCCGGCGCGCAGTTGCTCTTCGATCAATGCGTTCAAGCGCGACTGGCTCGATAACGGCACGCGGTCTTGGCAATAACCTGCCAAGTCGTGCTCACGCCAAGTCCTTGCCA  >  NC_002947/5245773‑5246061                                                                                                                                                 |                                                                                                                                                  accaccacGGACGAAATACGCTCGGCAGCGTCGGCGCTGTCTTCAGCGGCTTCGTTGATCATCCGCCTGATACGTTTCTCCAGGTCCTGGACAGGATCCCCGATACGCCCGGTCTCCCCTATCGGCG‑GCCGCACGCCCCTGCCTcgggc                                                                                                                                              >  3:26600‑M2/1‑144 (MQ=255) accaccacGGACGAAATACGCTCGGCAGCGTCGGCGCTGTCTTCAGCGGCTTCGTTGATCATCCGCCTGATACGTTTCTCCAGGTCCTGGACAGGATCCCCGATACGCCCGGTCTCCCCTATCGGCG‑GCCGCACGCCCCTGCCTc                                                                                                                                                  <  8:98708‑M2/145‑2 (MQ=255) accaccacGGACGAAATACGCTCGGCAGCGTCGGCGCTGTCTTCAGCGGCTTCGTTGATCATCCGCCTGATACGTTTCTCCAGGTCCTGGACAGGATCCCCGATACGCCCGGTCTCCCCTATCGGCG‑GCCGCACGCCCCTGCCTc                                                                                                                                                  >  7:98708‑M2/1‑144 (MQ=255)       acGGACGAAATACGCTCGGCAGCGTCGGCGCTGTCTTCAGCGGCTTCGTTGATCATCCGCCTGATACGTTTCTCCAGGTCCTGGACAGGATCCCCGATACGCCCGGTCTCCCCTATCGGCG‑GCCGCACGCCCCTGCCTCGGGCGACgg                                                                                                                                         >  3:191458/1‑148 (MQ=255)          gACGAAATACGCTCGGCAGCGTCGGCGCTGTCTTCAGCGGCTTCGTTGATCATCCGCCTGATACGTTTCTCCAGGTCCTGGACAGGATCCCCGATACGCCCGGTCTCCCCTATCGGCG‑GCCGCACGCCCCTGCCTCGGGCGACGGCATc                                                                                                                                     >  3:262005/1‑149 (MQ=255)              aaaTACGCTCGGCAGCGTCGGCGCTGTCTTCAGCGGCTTCGTTGATCATCCGCCTGATACGTTTCTCCAGGTCCTGGACAGGATCCCCGATACGCCCGGTCTCCCCTATCGGCG‑GCCGCACGCCCCTGCCTCGGGCGACGGCATCCAGc                                                                                                                                 <  5:241070/149‑1 (MQ=255)               aaTACGCTCGGCAGCGTCGGCGCTGTCTTCAGCGGCTTCGTTGATCATCCGCCTGATACGTTTCTCCAGGTCCTGGACAGGATCCCCGATACGCCCGGTCTCCCCTATCGGCG‑GCCGCACGCCCCTGCCTCGGGCGACGGCATCCAGca                                                                                                                                <  7:105762/149‑1 (MQ=255)                   cGCTCGGCAGCGTCGGCGCTGTCTTCAGCGGCTTCGGTGATCATCCGCCTGATACGTTTCTCCAGGTCCTGGACAGGATCCCCGATACGCCCGGTCTCCCCTATCGGCG‑GCCGCACGCCCCTGCCTCGGGCGACGGCATCCAGcacca                                                                                                                             <  8:100886/148‑1 (MQ=255)                    gCTCGGCAGCGTCGGCGCTGTCTTCAGCGGCTTCGTTGATCATCCGCCTGATACGTTTCTCCAGGTCCTGGACAGGATCCCCGATACGCCCGGTCTCCCCTATCGGCGCGCCGCACGCCCCTGCCTCGGGCGACGGCATCCAGca                                                                                                                                <  1:180696/145‑1 (MQ=255)                    gCTCGGCAGCGTCGGCGCTGTCTTCAGCGGCTTCGTTGATCATCCGCCTGATACGTTTCTCCAGGTCCTGGACAGGATCCCCGATACGCCCGGTCTCCCCTATCGGCG‑GCCGCACGCCCCTGCCTCGGGCGACGGCATCCAGca                                                                                                                                >  2:180696/1‑144 (MQ=255)                         gCAGCGTCGGCGCTGTCTTCAGCGGCTTCGTTGATCATCCGCCTGATACGTTTCTCCAGGTCCTGGACAGGATCCCCGATACGCCCGGTCTCCCCTATCGGCG‑GCCGCACGCCCCTGCCTCGGGCGACGGCATCCAGCACCACCCCAAt                                                                                                                      <  7:15944/149‑1 (MQ=255)                               tCGGCGCTGTCTTCAGCGGCTTCGTTGATCATCCGCCTGATACGTTTCTCCAGGTCCTGGACAGGATCCCCGATACGCCCGGTCTCCCCTATCGGCG‑GCCGCACGCCCCTGCCTCGGGCGACGGCATCCAGCACCACCCCAATGCCATc                                                                                                                >  5:32250/1‑149 (MQ=255)                                   cgcTGTCTTCAGCGGCTTCGTTGATCATCCGCCTGATACGTTTCTCCAGGTCCTGGACAGGATCCCCGATACGCCCGGTCTCCCCTATCGGCG‑GCCGCACGCCCCTGCCTCGGGCGACGGCATCCAGCACCACCCCAATGCCATCGCCg                                                                                                            >  2:245212/1‑149 (MQ=255)                                           tCAGCGGCTTCGTTGATCATCCGCCTGATACGTTTCTCCAGGTCCTGGACAGGATCCCCGATACGCCCGGTCTCCCCTATCGGCG‑GCCGCACGCCCCTGCCTCGGGCGACGGCATCCAGCACCACCCCAATGCCATCGCCGGCGCGCAg                                                                                                    >  3:33272/1‑149 (MQ=255)                                                 gCTTCGTTGATCATCCGCCTGATACGTTTCTCCAGGTCCTGGACAGGATCCCCGATACGCCCGGTCTCCCCTATCGGCG‑GCCGCACGCCCCTGCCTCGGGCGACGGCATCCAGCACCACCCCAATGCCATCGCCGGCGCGCAGTTGctc                                                                                              >  2:151135/1‑149 (MQ=255)                                                     cGTTGATCATCCGCCTGATACGTTTCTCCAGGTCCTGGACAGGATCCCCGATACGCCCGGTCTCCCCTATCGGCG‑GCCGCACGCCCCTGCCTCGGGCGACGGCATCCAGCACCACCCCAATGCCATCGCCGGCGCGCAGTTGCTCTTc                                                                                           <  6:32250/148‑1 (MQ=255)                                                       ttGATCATCCGCCTTATACGTTTCTCCAGGTCCTGGACAGGATCCCCGATACGCCCGGTCTCCCCTATCGGCG‑GCCGCACGCCCCTGCCTCGGGCGACGGCATCCAGCACCACCCCAATGCCATCGCCGGCGCGCAGTTGCTCTTCGAt                                                                                        <  3:57715/149‑1 (MQ=255)                                                          atcatcCGCCTGATACGTTTCTCCAGGTCCTGGACAGGATCCCCGATACGCCCGGTCTCCCCTATCGGCG‑GCCGCACGCCCCTGCCTCGGGCGACGGCATCCAGCACCACCCCAATGCCATCGCCGGCGCGCAGTTGCTCTTCGATCaa                                                                                     >  2:192900/1‑149 (MQ=255)                                                           tcatcCGCCTGATACGTTTCTCCAGGTCCTGGACAGGATCCCCGATACGCCCGGTCTCCCCTATCGGCG‑GCCGCACGCCCCTGCCTCGGGCGACGGCATCCAGCACCACCCCAATGCCATCGCCGGCGCGCAGTTGCTCTTCGATCAAt                                                                                    <  1:192900/149‑1 (MQ=255)                                                               ccGCCTGATACGTTTCTCCAGGTCCTGGACAGGATCCCCGATACGCCCGGTCTCCCCTATCGGCG‑GCCGCACGCCCCTGCCTCGGGCGACGGCATCCAGCACCACCCCAATGCCATCGCCGGCGCGCAGTTGCTCTTCGATCAATGCGt                                                                                >  2:146589/1‑149 (MQ=255)                                                                cGCCTGATACGTTTCTCCAGGTCCTGGACAGGATCCCCGATACGCCCGGTCTCCCCTATCGGCG‑GCCTCACGCCCCTGCCTCGGGCGACGGCATCCAGCACCACCCCAATGCCATCGCCGGCGCGCAGTTGCTCTTCGATCAATGCGtt                                                                               <  5:80919/149‑1 (MQ=255)                                                                   cTGATACGTTTCTCCAGGTCCTGGACAGGATCCCCGATACGCCCGGTCTCCCCTATCGGCG‑GCCGCACGCCCCTGCCTCGGGCGACGGCATCCAGCACCACCCCAATGCCATCGCCGGCGCGCAGTTGCTCTTCGATCAATGCGTTCaa                                                                            <  1:245212/149‑1 (MQ=255)                                                                   cTGATACGTTTCTCCAGGTCCTGGACAGGATCCCCGATACGCCCGGTCTCCCCTATCGGCG‑GCCGCACGCCCCTGCCTCGGGCGACGGCATCCAGCACCACCCCAATGCCATCGCCGGCGCGCAGTTGCTCTTCGATCAATGCGTTCaa                                                                            <  6:145229/149‑1 (MQ=255)                                                                   cTGATACGTTTCTCCAGGTCCTGGACAGGATCCCCGATACGCCCGGTCTCCCCTATCGGCG‑GCCGCACGCCCCTGCCTCGGGCGACGGCATCCAGCACCACCCCAATGCCATCGCCGGCGCGCAGTTGCTCTTCGATCAATGCGTTCaa                                                                            <  5:44437/149‑1 (MQ=255)                                                                          gTTTCTCCAGGTCCTGGACAGGATCCCCGATACGCCCGGTCTCCCCTATCGGCG‑GCCGCACGCCCCTGCCTCGGGCGACGGCATCCAGCACCACCCCAATGCCATCGCCGGCGCGCAGTTGCTCTTCGATCAATGCGTTCAAGCGCGAc                                                                     >  6:183439/1‑149 (MQ=255)                                                                          gTTTCTCCAGGTCCTGGACAGGATCCCCGATACGCCCGGTCTCCCCTATCGGCG‑GCCGCACGCCCCTGCCTCGGGCGACGGCATCCAGCACCACCCCAATGCCATCGCCGGCGCGCAGTTGCTCTTCGATCAATGCGTTCAAGCGCGAc                                                                     <  4:33272/149‑1 (MQ=255)                                                                                 cAGGTCCTGGACAGGATCCCCGATACGCCCGGTCTCCCCTATCGGCG‑GCCGCACGCCCCTGCCTCGGGCGACGGCATCCAGCACCACCCCAATGCCATCGCCGGCGCGCAGTTGCTCTTCGATCAATGCGTTCAAGCGCGACTGGCTc                                                               <  5:95031/148‑1 (MQ=255)                                                                                 cAGGTCCTGGACAGGATCCCCGATACGCCCGGTCTCCCCTATCGGCG‑GCCGCACGCCCCTGCCTCGGGCGACGGCATCCAGCACCACCCCAATGCCATCGCCGGCGCGCAGTTGCTCTTCGATCAATGCGTTCAAGCGCGACTGGCTc                                                               <  4:191458/148‑1 (MQ=255)                                                                                        tGGACAGGATCCCCGATACGCCCGGTCTCCCCTATCGGCG‑GCCGCACGCCCCTGCCTCGGGCGACGGCATCCAGCACCACCCCAATGCCATCGCCGGCGCGCAGTTGCTCTTCGATCAATGCGTTCAAGCGCGACTGGCTc                                                               <  8:73535/141‑1 (MQ=255)                                                                                        tGGACAGGATCCCCGATACGCCCGGTCTCCCCTATCGGCG‑GCCGCACGCCCCTGCCTCGGGCGACGGCATCCAGCACCACCCCAATGCCATCGCCGGCGCGCAGTTGCTCTTCGATCAATGCGTTCAAGCGCGACTGGCTc                                                               >  7:73535/1‑141 (MQ=255)                                                                                          gACAGGATCCCCGATACGCCCGGTCTCCCCTATCGGCG‑GCCGCACGCCCCTGCCTCGGGCGACGGCATCCAGCACCACCCCAATGCCATCGCCGGCGCGCAGTTGCTCTTCGATCAATGCGTTCAAGCGCGACTGGCTCGATAACGGc                                                      <  3:222338/148‑1 (MQ=255)                                                                                           aCATGATCCCCGATACGCCCGTTCTCCCCTATCGGCG‑GCCGCACGCCCCTGCCTCGGGCGACGGCATCCAGCACCACCCCAATGCCATCGCCGGCGCGCAGTTGCTCTTCGATCAATGCGTTCAAGCGCGACTGGCTCGATAACGGCAc                                                    <  3:75495/149‑1 (MQ=255)                                                                                             aGGATCCCCGATACGCCCGGTCTCCCCTATCGGCG‑GCCGCACGCCCCTGCCTCGGGCGACGGCATCCAGCACCACCCCAATGCCATCGCCGGCGCGCAGTTGCTCTTCGATCAATGCGTTCAAGCGCGACTGGCTCGATAACGGCAcgc                                                  >  1:95155/1‑149 (MQ=255)                                                                                                 tCCCCGATACGCCCGGTCTCCCCTATCGGCG‑GCCGCACGCCCCTGCCTCGGGCGACGGCATCCAGCACCACCCCAATGCCATCGCCGGCGCGCAGTTGCTCTTCGATCAATGCGTTCAAGCGCGACTGGCTCGATAACGGCACGCGGTc                                              >  8:12609/1‑149 (MQ=255)                                                                                                    ccGATACGCCCGGTCTCCCCTATCGGCG‑GCCGCACGCCCCTGCCTCGGGCGACGGCATCCAGCACCACCCCAATGCCATCGCCGGCGCGCAGTTGCTCTTCGATCAATGCGTTCAAGCGCGACTGGCTCGATAACGGCACGCGGTCTTg                                           >  8:248231/1‑149 (MQ=255)                                                                                                    ccGATACGCCCGGTCTCCCCTATCGGCG‑GCCGCACGCCCCTGCCTCGGGCGACGGCATCCAGCACCACCCCAATGCCATCGCCGGCGCGCAGTTGCTCTTCGATCAATGCGTTCAAGCGCCACTGGCTCGATAACGGCACGCGGTCTTg                                           <  1:151135/149‑1 (MQ=255)                                                                                                    ccGAAACGCCCGGTCTCCCCTATCGGCC‑GCCGCACGCCCCTGCCTCGGGCGACGGCATCCAGCACCACCCCAATGCCATCCCCGGCGCGCAGTTGCACTTCGATCAATGCGTTCAAGCGCGACTGGCTCGATAACGGAACGCGGTCATg                                           >  8:251698/1‑149 (MQ=255)                                                                                                     cGATACGCCCGGTCTCCCCTATCGGCG‑GCCGCACGCCCCTGCCTcgggcgtatcggggatcctgtccaggacctggagaaacgtatcaggcggatgatcaacgaagccgctgaagacagcgccgacgctgccgagcgtatttcgtccgt                                          <  6:268645‑M2/149‑106 (MQ=255)                                                                                                       aTACGCCCGGTCTCCCCTATCGGGG‑GCCGCACGCCCCTGCCTCGGGCGTCGGCATCCAGCACCACCCCTATGCCATCGCCGGCGCGCAGTTGCTCTTCGTTCAATGCGTTGAAGCGCGACTGGCTCGATAACGGCACGCGGTCTTGGCa                                        <  7:251698/149‑1 (MQ=255)                                                                                                       aTACGCCCGGTCTCCCCTATCGGCG‑GCCGCACGCCCCTGCCTcgggcgtatcggggatcctgtccaggacctggagaaacgtatcaggcggatgatcaacgaagccgctgaagacagcgccgacgctgccgagcgtatttcgtccgtgg                                        >  5:268645‑M2/1‑42 (MQ=255)                                                                                                       aTACGCCCGGTCTCCCCTATCGGCG‑GCCGCACGCCCCTGCCTcgggcgtatcggggatcctgtccaggacctggagaaacgtatcaggcggatgatcaacgaagccgctgaagacagcgccgacgctgccgagcgtatttcgtccgtgg                                        <  2:140386‑M2/149‑108 (MQ=255)                                                                                                       aTACGCCCGGTCTCCCCTATCGGCG‑GCCGCACGCCCCTGCCTCGGGCGACGGCATCCAGCACCACCCCAATGCCATCGCCGGCGCGCAGTTGCTCTTCGATCAATGCGTTCAAGCGCGACTGGCTCGATAACGGCACGCGGTCTTGGCa                                        <  7:248231/149‑1 (MQ=255)                                                                                                             ccGGTCTCCCCTATCGGCG‑GCCGCACGCCCCTGCCTCGGGCGACGGCATCCAGCACCACCCCAATGCCATCGCCGGCGCGCAGTTGCTCTTCGATCAATGCGTTCAAGCGCGACTGGCTCGATAACGGCACGCGGTCTTGGCAATAAcc                                  >  8:117212/1‑149 (MQ=255)                                                                                                               ggTCTCCCCTATCGGCG‑GCCGCACGCCCCTGCCTCGGGCGACGGCATCCAGCACCACCCCAATGCCATCGCCGGCGCGCAGTTGCTCTTCGATCAATGCGTTCAAGCGCGACTGGCTCGATAACGGCACGCGGTCTTGGCAATAACCTg                                <  4:262005/149‑1 (MQ=255)                                                                                                                     cccTATCGGCG‑GCCGCACGCCCCTGCCTCGGGCGACGGCATCCAGCACCACCCCAATGCCATCGCCGGCGCGCAGTTGCTCTTCGATCAATGCGTTCAAGCGCGACTGGCTCGATAACGGCACGCGGTCTTGGCAATAACCTGCCAAGt                          >  3:223670/1‑149 (MQ=255)                                                                                                                      ccTATCGGCG‑GCCGCACGCCCCTGCCTCGGGCGACGGCATCCAGCACCACCCCAATGCCATCGCCGGCGCGCAGTTGCTCTTCGATCAATGCGTTCAAGCGCGACTGGCTCGATAACGGCACGCGGTCTTGGCAATAACCTGCCAAGTc                         <  7:12609/149‑1 (MQ=255)                                                                                                                             gcg‑gcCGCACGCCCCTGCCTCGGGCGACGGCATCCAGCACCACCCCAATGCCATCGCCGGCGCGCAGTTGCTCTTCGATCAATGCGTTCAAGCGCGACTGGCTCGATAACGGCACGCGGTCTTGGCAATAACCTGCCAAGTCGTGCTCa                  <  2:72540/149‑1 (MQ=255)                                                                                                                             gcg‑gcCGCACGCCCCTGCCTCGGGCGACGGCATCCAGCACCACCCCAATGCCATCGCCGGCGCGCAGTTGCTCTTCGATCAATGCGTTCAAGCGCGACTGGCTCGATAACGGCACGCGGTCTTGGCAATAACCTGCCAAGTCGTGCTCa                  <  5:183439/149‑1 (MQ=255)                                                                                                                                   cGCACGCCCCTGCCTCGGGCGACGGCATCCAGCACCACCCCAATGCCATCGCCGGCGCGCAGTTGCTCTTCGATCAATGCGTTCAAGCGCGACTGGCTCGATAACGGCACGCGGTCTTGGCAATAACCTGCCAAGTCGTGCTCACGcc              >  8:68627/1‑148 (MQ=255)                                                                                                                                    gCACGCCCCTGCCTCGGGCGACGGCATCCAGCACCACCCCAATGCCATCGCCGGCGCGCAGTTGCTCTTCGATCAATGCGTTCAAGCGCGACTGGCTCGATAACGGCACGCGGTCTTGGCAATAACCTGCCAAGTCGTGCTCACGcc              >  5:22410/1‑147 (MQ=255)                                                                                                                                    gCACGCCCCTGCCTCGGGCGACGGCATCCAGCACCACCCCAATGCCATCGCCGGCGCGCAGTTGCTCTTCGATCAATGCGTTCAAGCGCGACTGGCTCGATAACGGCACGCGGTCTTGGCAATAACCTGCCAAGTCGTGCTCACGCCaa            <  4:223670/149‑1 (MQ=255)                                                                                                                                          cccTGCCTCGGGCGACGGCATCCAGCACCACCCCAATGCCATCGCCGGCGCGCAGTTGCTCTTCGATCAATGCGTTCAAGCGCGACTGGCTCGATAACGGCACGCGGTCTTGGCAATAACCTGCCAAGTCGTGc                     <  6:129856/134‑1 (MQ=255)                                                                                                                                          cccTGCCTCGGGCGACGGCATCCAGCACCACCCCAATGCCATCGCCGGCGCGCAGTTGCTCTTCGATCAATGCGTTCAAGCGCGACTGGCTCGATAACGGCACGCGGTCTTGGCAATAACCTGCCAAGTCGTGc                     >  5:129856/1‑134 (MQ=255)                                                                                                                                          cccTGCCTCGGGCGACGGCATCCAGCACCACCCCAATGCCATCGCCGGCGCGCAGTTGCTCTTCGATCAATGCGTTCAAGCGCGACTGGCTCGATAACGGCACGCGGTCTTGGCAATAACCTGCCAAGTCGTGCTCACGCCAAGTCCtt      <  6:22410/149‑1 (MQ=255)                                                                                                                                               ccTCGGGCGACGGCATCCAGCACCACCCCAATGCCATCGCCGGCGCGCAGTTGCTCTTCGATCAATGCGTTCAAGCGCGACTGGCTCGATAACGGCACGCGGTCTTGGCAATAACCTGCCAAGTCGTGCTCACGCCAAGTCCTTGCCa  <  7:117212/148‑1 (MQ=255)                                                                                                                                                cTCGGGCGACGGCATCCAGCACCACCCCAATGCCATCGCCGGCGCGCAGTTGCTCTTCGATCAATGCGTTCAAGCGCGACTGGCTCGATAACGGCACGCGGTCTTGGCAATAACCTGCCAAGTCGTGCTCACGCCAAGTCCTTGc    >  6:89876/1‑145 (MQ=255)                                                                                                                                                cTCGGGCGACGGCATCCAGCACCACCCCAATGCCATCGCCGGCGCGCAGTTGCTCTTCGATCAATGCGTTCAAGCGCGACTGGCTCGATAACGGCACGCGGTCTTGGCAATAACCTGCCAAGTCGTGCTCACGCCAAGTCCTTGc    <  5:89876/145‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                  ACCACCACGGACGAAATACGCTCGGCAGCGTCGGCGCTGTCTTCAGCGGCTTCGTTGATCATCCGCCTGATACGTTTCTCCAGGTCCTGGACAGGATCCCCGATACGCCCGGTCTCCCCTATCGGCG‑GCCGCACGCCCCTGCCTCGGGCGACGGCATCCAGCACCACCCCAATGCCATCGCCGGCGCGCAGTTGCTCTTCGATCAATGCGTTCAAGCGCGACTGGCTCGATAACGGCACGCGGTCTTGGCAATAACCTGCCAAGTCGTGCTCACGCCAAGTCCTTGCCA  >  NC_002947/5245773‑5246061

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.