New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5914184	22 (0.520)	4 (0.120)	4/202	NT	16.3%	intergenic (+76/+77)	spuI/argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
	?	NC_002947	= 5914224	24 (0.730)					intergenic (+116/+37)	spuI/argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase

AACTGGTACCTGCATACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCT‑CGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGAACCAG  >  NC_002947/5914085‑5914372                                                                                                                                            |                                                                                                                                                      aaCTGGTACCTGCATACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCCCGCCCGCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGGGACGTACCGGTgggagcggg                                                                                                                                              <  4:54506‑M2/149‑10 (MQ=255) aaCTGGTACCTGCATACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTGACTTACCTGTgggagcggg                                                                                                                                              >  8:156205‑M2/1‑140 (MQ=255) aaCTGGTACCTGCATACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTAGCGGGCACGCCCGCGCCCGCCGGGGAATTTAGAAGGCTGAAGCCTGTGACTTACCGGTgggcgcggg                                                                                                                                              <  8:21095‑M2/149‑10 (MQ=255)                 ccGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCCCGCCCGCGGCCGGCGGGGTATTTGGAAGGGTGAAGGCGGTGGCGTTCCGGTGGGGGCGGGCGTGGCCGCGGAGCgg                                                                                                                              >  3:225858/1‑149 (MQ=255)                  cGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCGCAGGGTAATTTCCACGGCTGAAGCCTGTGACTTACCTGTgggagcgggcgtgcccgcgaagaggg                                                                                                                             >  7:103481‑M2/1‑123 (MQ=255)                     gaaaaCGAAACCGCCGCCCCTCACGGGCGGCGTTTTTGTTTGAGACCGGGGTCGCCCTCTGCGCGGGCACGCCCGCTCCCGCAGGGTAATTTCGACGGCTGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGggcgg                                                                                                                          <  3:54506/147‑1 (MQ=39)                                                    gTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTGACTTACCGGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGGTTACAGGGGCTTCT‑CGAAAATCtt                                                                                          >  1:13780/1‑149 (MQ=255)                                                    gTTTTTGTTTGAGACCGGTGTCGCCCTCTTCCCGGGCACCCCCCCTACCCCAGCGGAATTTCCAAGGCATAAGCCAGTGACATACCTGTGGGACCGCGCCTGCCCGCCAAGAGGGCGGCCCAGGGGTACCGGGGCTTCT‑CCaaaaaat                                                                                           >  2:44077/1‑145 (MQ=255)                                                      ttttGTTTGAGACGGGTGTCGCCCTCTGCGCGGCCCCCCCCGCCCCCCCTGGTAAATTCCTACGGCTGACGCCTGTTACTTCCCTGGGGGCGGGGGGGTGCCCGCTAAGAGGGCGGCCCAGGCTTACAGGGGCTTCT‑CGAAAATCTTc                                                                                         <  2:170949/148‑1 (MQ=255)                                                                        ccGCCCTCTGCGCGGCCACGCCCGCTCCCGCTGGTTAATTGCCACGGCTCACGCCTGTTACTTACGGGTGGGAGCGGGCGGGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCT‑CGAAAATCTTCGAATTGCGCTGGTAGTTGt                                                                      <  7:21095/148‑1 (MQ=255)                                                                           cccTCTTCGCGGGCACGCCCGCTCCCGCAGGTTAATTTCTAAGGCTGACGCCTGTTACTTACCTGGGGCAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCT‑CGAAAATCTTCGAATTGCGCTGGTAGTTGTACa                                                                   <  2:13780/149‑1 (MQ=255)                                                                                 tCGCGGGCAGGCCCGCTCCCGCAGGGTATTTTCGAAGGCTGATGCTTGTGACTTACCTGGGGGAGGGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGa                                                               <  1:44077/148‑1 (MQ=255)                                                                                    cgGGCACGCCCGCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCT‑CGAAAATCTTCGaa                                                                                      >  7:230417/1‑121 (MQ=255)                                                                                           gCCCGCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCT‑CGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGcgccgc                                                   >  3:103228/1‑149 (MQ=255)                                                                                             ccGCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTGACTTACCTGTgggagcgggcgtgcccgcgaagagggcgacaccggtctcaaacaaaaacgccgcccttgaggggcggcgttttcgtttacacggtatgcaggtaccagttg                                                  <  5:62866‑M2/149‑102 (MQ=255)                                                                                                   ccGCAGGGTAATTTCGAAGGCTGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCT‑CGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGcc                                           >  1:64648/1‑149 (MQ=255)                                                                                                    cGCAGGGTAATTTCGAAGGCTGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCAGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCT‑CGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGCCg                                          >  8:12474/1‑149 (MQ=255)                                                                                                     gCAGGGTAATTTCGAAGGCTGAAGCCTGTGACTTACCTGTgggagcgggcgtgcccgcgaagagggcgacaccggtctcaaacaaaaacgccgcccttgaggggcggcgt                                                                                 <  5:122363‑M2/110‑71 (MQ=255)                                                                                                     gCAGGGTAATTTCGAAGGCTGAAGCCTGTGACTTACCTGTgggagcgggcgtgcccgcgaagagggcgacaccggtctcaaacaaaaacgccgcccttgaggggcggcgt                                                                                 >  6:122363‑M2/1‑40 (MQ=255)                                                                                                        ggttAATTTCTAAGTCTTAAGCATTTGACTTCCGTTTGGTAGGGGGCGTGCCCGCTAATAGGGCGGCCCAGGCTTACAGGGGCTTCT‑CGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCTCGCCGCCGGCAGCCGCTcc                                      <  1:210943/146‑1 (MQ=255)                                                                                                               ttCGAAGGCTGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCT‑CGAAAATCTTCGAATTGCGCTGGTAGtt                                                                        <  4:183408/108‑1 (MQ=255)                                                                                                               ttCGAAGGCTGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCT‑CGAAAATCTTCGAATTGCGCTGGTAGtt                                                                        >  3:183408/1‑108 (MQ=255)                                                                                                               ttCGAAGGCTGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCT‑CGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCAc                                    <  2:99971/144‑1 (MQ=255)                                                                                                               ttCGAAGGCTGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCT‑CGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCAc                                    >  1:99971/1‑144 (MQ=255)                                                                                                                   aaGGCTGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCT‑CGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCgg                           >  5:208765/1‑149 (MQ=255)                                                                                                                   aaGGCTGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCT‑CGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCgg                           >  5:245449/1‑149 (MQ=255)                                                                                                                    aGGCTGAAGCCTGTGACTTACCTGTgggagcgggcgtgcccgcgaagagggcgacaccggtctcaaacaaaaacgccgcccttgaggggcggcgttttcgtttacacggtatgcaggtaccagttgtactcgaggtcggagatcgagtg                           >  6:62866‑M2/1‑25 (MQ=255)                                                                                                                     ggCTGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCT‑CGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGgcg                         <  6:245449/149‑1 (MQ=255)                                                                                                                       cTGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCT‑CGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCAc                                    <  8:46560/136‑1 (MQ=255)                                                                                                                       cTGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCT‑CGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCAc                                    >  7:46560/1‑136 (MQ=255)                                                                                                                              cTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCT‑CGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCcgc                >  2:71126/1‑149 (MQ=255)                                                                                                                                  gACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCT‑CGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTc            >  4:260569/1‑149 (MQ=255)                                                                                                                                   aCTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCT‑CGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCAGCCGGCAGCCGCTCCCCGCCACTCGGCGCAAAGCCGCGCTcg           >  2:64938/1‑149 (MQ=255)                                                                                                                                     ttACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCGTACAGGGGCTTCT‑CGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTcgcg         >  1:190685/1‑149 (MQ=255)                                                                                                                                         cTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCT‑CGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGAAc     >  2:72600/1‑149 (MQ=255)                                                                                                                                           gtgGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCT‑CGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCgg        <  7:59315/144‑1 (MQ=255)                                                                                                                                           gtgGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCT‑CGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCgg        >  8:59315/1‑144 (MQ=255)                                                                                                                                            tgGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCT‑CGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGAACcag  >  8:119874/1‑149 (MQ=255)                                                                                                                                            tgGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCT‑CGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGAACcag  >  7:45034/1‑149 (MQ=255)                                                                                                                                            |                                                                                                                                                      AACTGGTACCTGCATACCGTGTAAACGAAAACGCCGCCCCTCAAGGGCGGCGTTTTTGTTTGAGACCGGTGTCGCCCTCTTCGCGGGCACGCCCGCTCCCGCAGGGTAATTTCGAAGGCTGAAGCCTGTGACTTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCT‑CGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCAGCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGAACCAG  >  NC_002947/5914085‑5914372

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.