New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6006760	48 (1.140)	4 (0.100)	4/248	NT	8.2%	coding (798/927 nt)	PP_5261	LysR family transcriptional regulator
	?	NC_002947	= 6006781	43 (1.060)					coding (777/927 nt)	PP_5261	LysR family transcriptional regulator

AAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTGCGCCACATCTTCGGCCACCATCAGCAGGTCGCCCATGGATATCCCGTAGCCACGCGCCGCGGCAATCATGCCCAGCTCCAGGGTATCGAACACCTGGCCGCCCTTGAGCGACACCT  >  NC_002947/6006633‑6006920                                                                                                                                                     |                                                                                                                                            aaaGACGCGGCAGGATTTCCACATACGGCAAATCCATTGCCGCAACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCAGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGc                                                                                                                                             >  5:37941/1‑149 (MQ=255)  aaGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGc                                                                                                                                             >  5:211436/1‑148 (MQ=255)    gACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCcat                                                                                                                                          >  3:172516‑M2/1‑146 (MQ=255)      cgcgGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCcatgg                                                                                                                                        >  3:132843‑M2/1‑144 (MQ=255)         ggCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGACCGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCCTCGTCCATGGCAg                                                                                                                                     >  3:225498/1‑149 (MQ=255)          gCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAgg                                                                                                                                    <  7:186990/149‑1 (MQ=255)             ggATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTc                                                                                                                                 <  7:63185/149‑1 (MQ=255)                tttCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAg                                                                                                                              <  2:209840/149‑1 (MQ=255)                   ccACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAgcgc                                                                                                                           >  7:205385/1‑149 (MQ=255)                         ccGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTgc                                                                                                                     >  7:190177/1‑149 (MQ=255)                          cGGCAAATCCAGTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTgc                                                                                                                     <  3:139484/148‑1 (MQ=255)                          cGGCAAATCCAATGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTgc                                                                                                                     <  3:135745/148‑1 (MQ=255)                                    aTTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTGCGCCACATCTTc                                                                                                          >  1:11732/1‑149 (MQ=255)                                         cgccACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTGCGCCACATCTTCGGcca                                                                                                     <  8:205385/149‑1 (MQ=255)                                          gccACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTGCGCCACATCTTCGGccac                                                                                                    >  6:240990/1‑149 (MQ=255)                                            cACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTGCGCCACATCTTCGGccacca                                                                                                  >  1:26693/1‑149 (MQ=255)                                            cACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTGCGCCACATCTTCGGccacca                                                                                                  <  5:240990/149‑1 (MQ=255)                                              ccTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTGCGCCACATCTTCTGc                                                                                                       <  3:226314/142‑1 (MQ=255)                                              ccTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTGCGCCACATCTTCGGc                                                                                                       >  4:226314/1‑142 (MQ=255)                                               cTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTGCGCCACATCTTCGGCCACCAt                                                                                                 >  6:29953/1‑147 (MQ=255)                                               cTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTGCGCCACATCTTCGGCCACCAt                                                                                                 >  1:127974/1‑147 (MQ=255)                                                  gCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTGCGCCACATCTTCGGCCACCATcagc                                                                                             <  7:216494/148‑1 (MQ=255)                                                     ttCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTGCGCCGCATCTTCGGCCACCATCAGCAGGt                                                                                         >  6:4326/1‑149 (MQ=255)                                                        cAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCAATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTGCCCCACATCTTCGGCCACCATCAGCAGGTCGc                                                                                      >  3:131150/1‑149 (MQ=255)                                                           gaactgaCTCAACCGCCGCAACCGCTCGGCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTGCGCCACATCTTCGGCCACCATCAGCAGGTCGCCCa                                                                                   <  4:131150/143‑1 (MQ=255)                                                             aCGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTGCGCCACATCTTCGGCCACCATCAGCAGGTCGCCCATg                                                                                 <  2:11732/149‑1 (MQ=255)                                                              cGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCTCTTCTGCGCCACATCTTCGGCCACCATCAGCAGGTCGCCCATgg                                                                                <  8:190177/149‑1 (MQ=255)                                                                     aaCCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTGCGCCACATCTTCGGCCACCATCAGCAGGTCGCCCATGGATATccc                                                                         >  4:46516/1‑149 (MQ=255)                                                                      aCCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTGCGCCACATCTTCGG‑CACCATCAGCAGGTCGCCCATGGATATCCCGt                                                                       <  6:78034/149‑1 (MQ=255)                                                                       ccgccgCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTGCGCCACATCTTCGGCCACCATCAGCAGGTCGCCCATGGATATCCCGt                                                                       <  1:118484/149‑1 (MQ=255)                                                                         gccgcAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTGCGCCACATCTTCGGCCACCATCAGCAGGTCGCCCATGGATATCCCGTAg                                                                     <  5:29953/149‑1 (MQ=255)                                                                                ccGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCCGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTGCGCCACATCTTCGGCCACCATCAGCAGGTCGCCCATGGATATCCCGTAGCCAcgcg                                                              >  3:237263/1‑149 (MQ=255)                                                                                 cGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTGCGCCACATCTTCGGCCACCATCAGCAGGTCGCCCATGGATATCCCGTAGCCACgcgc                                                             >  8:211326/1‑149 (MQ=255)                                                                                    tCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTGCGCCACATCTTCGGCCACCATCAGCAGGTCGCCCATGGATATCCCGTAGCCACGcgccgc                                                          >  6:37891/1‑149 (MQ=255)                                                                                      gccgccTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTGCGCCACATCTTCGGCCACCATCAGTAGGTCGCCCATGGATATCCCGTAGCCACGCGCCGCgg                                                        >  6:271274/1‑149 (MQ=255)                                                                                                          gCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTGCGCCACATCTTCGGCCACCATCAGCAGGTCGCCCATGGATATCCCGTAGCCACGCGCCGCGGCAATCATGCCCAGCTCCAgg                                    <  2:26693/149‑1 (MQ=255)                                                                                                          gCCACACCAGGTACTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTGCGCCACATCTTCGGCCACCATCAGCAGGTCGCCCATGGATATCCCGTAGCCACGCGCCGCGGCAATCATGCCCAGCTCCAgg                                    <  4:42036/149‑1 (MQ=255)                                                                                                           ccACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTGCGCCACATCTTCGGCCACCATCAGCAGGTCGCCCATGGATATCCCGTAGCCACGCGCCGCGGCAATCATGCCCAGCTCCAggg                                   <  6:211436/149‑1 (MQ=255)                                                                                                                ccAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTGCGCCACATCTTCGGCCACCATCAGTAGGTCGCCCATGGATATCCCGTAGCCACGCGCCGCGGCAATCATGCCCAGCTCCAGGGTATCg                              <  5:271274/149‑1 (MQ=255)                                                                                                                ccAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTGCGCCACATCTTCGGCCACCATCAGCAGGTCGCCCATGGATATCCCGTAGCCACGCGCCGCGGCAATCATGCCCAGCTCCAGGGTATCg                              <  2:127974/149‑1 (MQ=255)                                                                                                                     tagtaATCCATGCCGCTGGGCACCGCCGTCGGCcatggattactacctggtgtggccgcgcacccggcgaggcggcgagcggttgcggcggttgagtgcgttcctggaaggcgaggtggcggcaat                                                >  4:264452‑M2/1‑33 (MQ=255)                                                                                                                     tagtaATCCATGCCGCTGGGCACCGCCGTCGGCcatggattactacctggtgtggccgcgcacccggcgaggcggcgagcggttgcggcggttgagtgcgttcctggaaggcgaggtggcggcaat                                                <  3:264452‑M2/126‑94 (MQ=255)                                                                                                                     tagtaATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTGCGCCACATCTTCGGCCACCATCAGCAGGTCGCCCATGGATATCCCGTAGCCACGCGCCGCGGCAATCATGCCCAGCTCCAGGGTATCGAacac                         >  3:217531/1‑149 (MQ=255)                                                                                                                        taATCCATGCCGCTGGGCACCGCCGTCGGCcatggattactacctggtgtggccgcgcacccggcgaggcggcgagcggttgcggcggttgagtgcgttcctggaaggcgaggtggcggcaatggatttgccggatgtggaaatcctgc                      <  4:168519‑M2/149‑120 (MQ=255)                                                                                                                         aaTCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTGCGCCACATCTTCGGCCACCATCAGCAGGTCGCCCAAGCATAAACCGTAGCCACGCGCTGCGGCAATCATGCCCAGCTCCAGGGTATCGAACACCTgg                     >  4:125247/1‑149 (MQ=255)                                                                                                                          aTCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTGCGCCACATCTTCGGCCACCATCAGCAGGTCGCCCATGGATATCCCGTAGCCACGCGCCGCGGCAATCATGCCCAGCTCCAGGGTATCGAACACCTGgc                    >  2:94863/1‑149 (MQ=255)                                                                                                                           tCCATGCCGCTGGGCACCGCCGTCGGCatggattactacctggtgtggccgcgcacccggcgaggcggcgagcggttgcggcggttgagtgcgttcctggaaggcgaggtggcggcaatggatttgccggatgtggaaatcctgccgcg                   <  1:155482‑M2/149‑123 (MQ=255)                                                                                                                             cATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTGCGCCACATCTTCGGCCACCATCAGCAGGTCGCCCATGGATATCCCGTAGCCACGCGCCGCGGCAATCATGCCCAGCTCCAGGGTATCGAACACCTGgccgc                 >  8:146598/1‑149 (MQ=255)                                                                                                                               tGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTGCGCCACATCTTCGGCCACCATCAGCAGGTCGCCCATGGATATCCCGTAGCCACGCGCCGCGGCAATCATGCCCAGCTCCAGGGTATCGAACACCTGGCCGccc               <  7:211326/149‑1 (MQ=255)                                                                                                                                       ggCACCGCCGTCGGCCATGGCAGGCTCAAGCCCTTCTGCGCCACATCTTCGGCCACCATCAGCAGGTCGCCCATGGATATCCCGTAGCCACGCGCCGCGGCAATCATGCCCAGCTCCAGGGTATCGAACACCTGGCCGCCCTTGAGCGa       <  7:242400/149‑1 (MQ=255)                                                                                                                                          aCCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTGCGCCACATCTTCGGCCACCATCAGCAGGTCGCCCATGGATATCCCGTAGCCACGCGCCGCGGCAATCATGCCCAGCTCCAGGGTATCGAACACCTGGCCGCCCTTGAGCGacac    >  2:168682/1‑149 (MQ=255)                                                                                                                                            cgccgTCGGCCATGGCAGGCTCAAGCGCTTCTGCGCCACATCTTCGGCCACCATCAGCAGGTCGCCCATGGATATCCCGTAGCCACGCGCCGCGGCAATCATGCCCAGCTCCAGGGTATCGAACACCTGGCCGCCCTTGAGCGACACCt  >  2:259122/1‑149 (MQ=255)                                                                                                                                            cgccgTCGGCCATGGCAGGCTCAAGCGCTTCTGCGCCACATCTTCGGCCACCATCAGCAGGTCGCCCATGGATATCCCGTAGCCACGCGCCGCGGCAATCATGCCCAGCTCCAGGGTATCGAACACCTGGCCGCCCTTGAGCGACACCt  >  8:147616/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                            AAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTGCGCCACATCTTCGGCCACCATCAGCAGGTCGCCCATGGATATCCCGTAGCCACGCGCCGCGGCAATCATGCCCAGCTCCAGGGTATCGAACACCTGGCCGCCCTTGAGCGACACCT  >  NC_002947/6006633‑6006920

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.