| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_002947 | 5,555,608 | +GCC | intergenic (‑84/+87) | PP_4887 ← / ← PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5555608 | 3 (0.090) | 13 (0.410) +GCC |
12/284 | 1.8 | 81.6% | intergenic (‑84/+87) | PP_4887/PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| ? | NC_002947 | 5555609 = | 3 (0.090) | intergenic (‑85/+86) | PP_4887/PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer | |||||
GGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATA‑‑‑G‑CG‑‑‑CCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCACC > NC_002947/5555485‑5555752 | ggTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATA‑‑‑G‑CGgccccggcaatttccgcgtgtat < 4:132968‑M1/147‑24 (MQ=255) gCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATA‑‑‑G‑CGgccccggcaatttccgcgtgtatgcaacaaacctg < 6:167979‑M1/148‑36 (MQ=255) gCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATA‑‑‑G‑CGgccccggcaatttccgcgtgtatgcaacaaacct < 5:164189‑M1/147‑35 (MQ=255) gATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATA‑‑‑G‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggct < 4:57760‑M1/148‑41 (MQ=255) ggCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATA‑‑‑G‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcag < 3:43082‑M1/148‑50 (MQ=255) cTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGAAGCGGCCTTGTTTCGCGAAAGGGCCGCATA‑‑‑G‑CGgccccggccaattgcgcggggattgcacaaacctggggctgctatgccgccctttggcgccacc > 4:35596‑M1/1‑84 (MQ=255) ttttGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTAGCGAAAGGGCCGCATA‑‑‑T‑CGggcccggcaatttccgcgtgtagtccacaaaacaggggctgcgttgcagccctttcgcgcccccaggc > 6:81810‑M1/1‑80 (MQ=255) aTGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTAGCGGAAAGGCCGCCGA‑‑‑GCCGCC‑CCCGCCAATTCCGCGGGGATGCCACACACCAGGGGGGGGGATGCACCCCATTCGCGACCCAAGGCCCCCaaa > 6:91329/1‑148 (MQ=255) aTGTGTCGCCGACAGCATAGCAACACAGCTCATTTGTGGGAGCGGCCTTGCGTCGCGAAAGGTCCGCATA‑‑‑G‑CGGCCCCGGGAATTTACTCGTGGTTGAAACAAACCTGGGGCGGCGATGCATCCCTTTAGCGCAAAACTGCCCACaaa > 5:153157/1‑148 (MQ=16) cAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCCCATACCCG‑CC‑‑‑CCCGCAATTTCCGCCGGTAAGGAACCAACCACGGGCAGCGATGCCCCCCCTTCCCCACACCAAGCCCCCAAACGACCCCCCCGGCGTCACGc > 6:175830/1‑148 (MQ=9) cGCTCCGGGGGGGGAGCGGCCTTGTGGCGCGAAAGGGCCGCATA‑‑‑G‑CGgccccggcaatatccgcgagaatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaa < 5:159564‑M1/148‑102 (MQ=255) attgGGTCGCGATCGGGCCGCATA‑‑‑T‑CGgccccggaaatttgcgcgtgtatgaaacaaacctggggctgctatgcagccctttcgcgacacaaggcccaaaaaggaccgcgcaggcttcaggcccgtaactggcccaggctggcgcgca < 6:1318‑M1/147‑122 (MQ=255) gtgtCGCGAAAGGGCCGCATA‑‑‑G‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagct > 1:12580‑M1/1‑24 (MQ=255) gtCGCGAAAGGGCCGCATA‑‑‑G‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctga < 5:87681‑M1/148‑127 (MQ=255) cggggccGCTAT‑‑‑G‑CGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccg > 4:54616‑M1/3‑15 (MQ=255) ggccccggcaatttccgcgggtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgccagatcatccagcacc < 3:35880‑M1/148‑148 (MQ=255) | GGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATA‑‑‑G‑CG‑‑‑CCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCACC > NC_002947/5555485‑5555752 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |