| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_002947 | 5,555,608 | +GCC | intergenic (‑84/+87) | PP_4887 ← / ← PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5555608 | 3 (0.090) | 13 (0.410) +GCC |
12/284 | 1.8 | 81.6% | intergenic (‑84/+87) | PP_4887/PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| ? | NC_002947 | 5555609 = | 3 (0.090) | intergenic (‑85/+86) | PP_4887/PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer | |||||
GGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATA‑‑‑G‑CG‑‑‑CCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCACC > NC_002947/5555489‑5555752 | ggtcggcctgggcagcgattagtcgggcggacatgagcaactccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCCGGCAATTTCCGCGTGTAt < 4:132968‑M2/20‑1 (MQ=255) gcagcgattagtcgggcggacatgagcaactccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCCGGCAATTTCCGCGTGTATGCAACAAACCt < 5:164189‑M2/31‑1 (MQ=255) gcagcgattagtcgggcggacatgagcaactccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCCGGCAATTTCCGCGTGTATGCAACAAACCTg < 6:167979‑M2/32‑1 (MQ=255) gattagtcgggcggacatgagcaactccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGgct < 4:57760‑M2/37‑1 (MQ=255) ggcggacatgagcaactccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAg < 3:43082‑M2/46‑1 (MQ=255) ctccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtggaagcggccttgtttcgcgaaagggccgcatagcggccCCGGCCAATTGCGCGGGGATTGCACAAACCTGGGGCTGCTATGCCGCCCTTTGGCgccacc > 4:35596‑M2/88‑147 (MQ=255) ttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtagcgaaagggccgcatatcgggcCCGGCAATTTCCGCGTGTAGTCCACAAAACAGGGGCTGCGTTGCAGCCCTTTCGCGCCCCCAGGc > 6:81810‑M2/84‑148 (MQ=255) aTGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTAGCGGAAAGGCCGCCGA‑‑‑GCCGCC‑CCCGCCAATTCCGCGGGGATGCCACACACCAGGGGGGGGGATGCACCCCATTCGCGACCCAAGGCCCCCaaa > 6:91329/1‑148 (MQ=255) aTGTGTCGCCGACAGCATAGCAACACAGCTCATTTGTGGGAGCGGCCTTGCGTCGCGAAAGGTCCGCATA‑‑‑G‑CGGCCCCGGGAATTTACTCGTGGTTGAAACAAACCTGGGGCGGCGATGCATCCCTTTAGCGCAAAACTGCCCACaaa > 5:153157/1‑148 (MQ=16) cAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCCCATACCCG‑CC‑‑‑CCCGCAATTTCCGCCGGTAAGGAACCAACCACGGGCAGCGATGCCCCCCCTTCCCCACACCAAGCCCCCAAACGACCCCCCCGGCGTCACGc > 6:175830/1‑148 (MQ=9) cgctccggggggggagcggccttgtggcgcgaaagggccgcatagcggccCCGGCAATATCCGCGAGAATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGaa < 5:159564‑M2/98‑1 (MQ=255) attgggtcgcgatcgggccgcatatcggccCCGGAAATTTGCGCGTGTATGAAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCAAAAAGGACCGCGCAGGCTTCAGGCCCGTAACTGGCCCAGGCTGGCGCGCa < 6:1318‑M2/118‑1 (MQ=255) gtgtcgcgaaagggccgcatagcggccCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCt > 1:12580‑M2/28‑148 (MQ=255) gtcgcgaaagggccgcatagcggccCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGa < 5:87681‑M2/123‑1 (MQ=255) cggggccgctatgcggccCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAgccg > 4:54616‑M2/19‑145 (MQ=255) ggccCCGGCAATTTCCGCGGGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCAcc < 3:35880‑M2/144‑1 (MQ=255) | GGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATA‑‑‑G‑CG‑‑‑CCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCACC > NC_002947/5555489‑5555752 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |