New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 250236	35 (0.710)	3 (0.070)	3/236	NT	7.9%	coding (967/1347 nt)	nfeD	membrane bound peptidase NefD
	?	NC_002947	= 250260	38 (0.840)					coding (943/1347 nt)	nfeD	membrane bound peptidase NefD

GCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/250134‑250236 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgaagccTTCTTGCCCAGTTTCGGCGTGGTCGGCTTCGGCGGCATCGTTGCCTTTGTGGTCGGCGCATTGATCCTGATCGACACCGACGCTCCCGGTTTCGGCATCCCCCTGGCCTTGATCGGCACCTTGGCGCTGCTCTCGGCACTC  <  NC_002947/250260‑250120                                                                                                                                                                                                                                                      GCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGGGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCTTCTTGCCCAGTTTCGGCGTGGTCGGCTTCGGCGGCATCGTTGCCT                                                                                                 <  8:39091/149‑1   GCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCTTCTTGCCCAGTTTCGGCGTGGTCGGCTTC                                                                                                                 >  7:75701/1‑131   GCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCTTCTTGCCCAGTTTCGGCGTGGTCGGCTTC                                                                                                                 <  8:75701/131‑1                                                                                                CCGAAGCCTTCTTGCCCAGTTTCGGCGTGGTCGGCTTCGGCGGCATCGTTGCCTTTGTGGTCGGCGCATTGATCCTGATCGACACCGACGCTCCCGGTTTCGGCATCCCCCTGGCCTTGATCGGCACCTTGGCGCTGCTCTCGGCACTC  <  2:72845/149‑1                                                                                                                                                                                                                                                      GCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/250134‑250236 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgaagccTTCTTGCCCAGTTTCGGCGTGGTCGGCTTCGGCGGCATCGTTGCCTTTGTGGTCGGCGCATTGATCCTGATCGACACCGACGCTCCCGGTTTCGGCATCCCCCTGGCCTTGATCGGCACCTTGGCGCTGCTCTCGGCACTC  <  NC_002947/250260‑250120

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.