New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 250236	35 (0.710)	3 (0.070)	3/236	NT	7.9%	coding (967/1347 nt)	nfeD	membrane bound peptidase NefD
	?	NC_002947	= 250260	38 (0.840)					coding (943/1347 nt)	nfeD	membrane bound peptidase NefD

GAGTGCCGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCCAGCAGCAGGCAGATACCACCGACCACACCGCCCACCGCAGAACCTGGGTTCATGAATTC  >  NC_002947/250120‑250407                                                                                                                                             |                                                                                                                                                    gAGTGCCGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAggcttcgg                                                                                                                                             <  2:72845‑M2/149‑9 (MQ=255)    tGCCGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGa                                                                                                                                          <  4:138867/149‑1 (MQ=255)      ccGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATc                                                                                                                                        <  7:154603/149‑1 (MQ=255)           agcagcGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATg                                                                                                                                     >  8:296935/1‑147 (MQ=255)                        tGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAg                                                                                                                       <  7:296935/148‑1 (MQ=255)                        tGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGc                                                                                                                      <  3:52776/149‑1 (MQ=255)                                 aGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGTATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAgc                                                                                                             <  2:271689/149‑1 (MQ=255)                                   gCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAgcgc                                                                                                           <  1:72845/149‑1 (MQ=255)                                     cAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCa                                                                                                         >  8:124451/1‑149 (MQ=255)                                      aGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATAAGGATCAATGCGCCGACCACAAAGTCAACGATGCCGCAGAAGCCGAACACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGTATCAGCGCCAc                                                                                                        >  4:121954/1‑149 (MQ=255)                                               ccGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCaa                                                                                                >  7:145732/1‑148 (MQ=255)                                                 gAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAAc                                                                                             <  4:103033/149‑1 (MQ=255)                                                        ggAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCgg                                                                                      <  7:124451/149‑1 (MQ=255)                                                        ggAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGAACACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCCGCGCCCCCCCGGCAAAACTCACCgg                                                                                      >  2:228427/1‑149 (MQ=255)                                                          aGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCCCCCCGGCAAAGCTCACCGGc                                                                                     >  8:250490/1‑148 (MQ=255)                                                                  tgtCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGc                                                                            <  3:229576/149‑1 (MQ=255)                                                                        tCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCa                                                                      >  2:101928/1‑149 (MQ=255)                                                                           ggATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATa                                                                    >  2:83589/1‑148 (MQ=255)                                                                            gATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACa                                                                  <  8:145732/149‑1 (MQ=255)                                                                             aTCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAg                                                                 >  5:270704/1‑149 (MQ=255)                                                                                  tGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCca                                                            <  3:294865/149‑1 (MQ=255)                                                                                          ccACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCCAGCAgcagg                                                    <  1:83589/149‑1 (MQ=255)                                                                                          ccACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCCAGCAgcagg                                                    >  6:18045/1‑149 (MQ=255)                                                                                              aaaGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCCAGCAgcagg                                                    >  1:221085/1‑145 (MQ=255)                                                                                               aaGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCCAGCAGCAGGCAGAt                                               <  5:184689/149‑1 (MQ=255)                                                                                                aGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAggcttcggcggcatcgttgcctttgtggtcggcgcattgatcctgatcgacaccgacgcccccggtttcggcatccccctggccttgatcggcaccttggcgc                                              <  8:39091‑M2/149‑104 (MQ=255)                                                                                                   cAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCCAGCAGCAGGCAGATacca                                           >  4:53156/1‑149 (MQ=255)                                                                                                    aaCGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCcagcagca                                                      >  8:6830/1‑137 (MQ=255)                                                                                                    aaCGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCcagcagca                                                      <  7:6830/137‑1 (MQ=255)                                                                                                    aaCGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCCAGCAGCAGGCAGATaccac                                          >  5:159919/1‑149 (MQ=255)                                                                                                      cGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCt                                                                              >  7:167174/1‑111 (MQ=255)                                                                                                      cGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCt                                                                              <  8:167174/111‑1 (MQ=255)                                                                                                        aTGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCCAGCAGCAGGCAGATACCACCGAc                                      <  5:18045/149‑1 (MQ=255)                                                                                                            cgccgAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCCAGCAGCAGGCAGATACCACCGACcaca                                  >  2:219167/1‑149 (MQ=255)                                                                                                                gAAGCCGACCACGCCGAAACTGGGCAAGAAggcttcggcggcatcgttgcctttgtggtcggcgcattgatcctgatcgacaccgacgctcccggtttcggcatccccctggccttgatcggcaccttggc                                                <  8:75701‑M2/131‑102 (MQ=255)                                                                                                                gAAGCCGACCACGCCGAAACTGGGCAAGAAggcttcggcggcatcgttgcctttgtggtcggcgcattgatcctgatcgacaccgacgctcccggtttcggcatccccctggccttgatcggcaccttggc                                                >  7:75701‑M2/1‑30 (MQ=255)                                                                                                                      gACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCCAGCAGCAGGCAGATACCACCGACCACACCGCCCCCCg                        >  4:166296/1‑149 (MQ=255)                                                                                                                      gACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGAATACAGCGCCAGCAGCAGGCAGATACCACCGACAAAACCGCCCaag                         >  7:144488/1‑146 (MQ=255)                                                                                                                      caCCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCCAGCAGCAGGCAGATACCACCGACCACACCGccc                            <  8:144488/144‑1 (MQ=255)                                                                                                                            gCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCCAGCAGCAGGCAGATACCACCGACCACACCGCCCACCGCAGAAc                  >  3:148524/1‑149 (MQ=255)                                                                                                                              cGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCCAGCAGCAGGCAGATACCACCGACCACACCGCCCACCGCAGCACCt                >  2:318257/1‑149 (MQ=255)                                                                                                                                aaaCTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCCAGCAGCAGGCAGATACCACCGACCACACCGCCCACCGCAGAACCTgg              <  2:221085/149‑1 (MQ=255)                                                                                                                                  aCTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGTATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCCAGCAGCAGGCAGATACCACCGACCACACCGCCCACCGCAGAACCTGGGt            <  3:121954/149‑1 (MQ=255)                                                                                                                                  aCTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCCAGCAGCAGGCAGATACCACCGACCACACCGCCCACCGCAGAACCTGGGt            <  1:219167/149‑1 (MQ=255)                                                                                                                                            aagGCTTCGGCGTTCATGAAGGTGTTGGCAAGAAGGATCAGCGGCACCGCGGAAATAGTCTCTGGCAAAAGGTGCATGGCATTCTGGGCTATCAGCAGGCAGATACCAACTTCCACACGGACCTGCGCAGAACCTGGGTTCATGAAtta  <  4:148524/149‑2 (MQ=255)                                                                                                                                             |                                                                                                                                                    GAGTGCCGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCACGCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCCAGCAGCAGGCAGATACCACCGACCACACCGCCCACCGCAGAACCTGGGTTCATGAATTC  >  NC_002947/250120‑250407

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.