New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	259606 =	68 (1.380)	4 (0.080)	3/246	NT	6.4%	coding (1140/1407 nt)	PP_0207	nitrate ABC transporter substrate‑binding protein
	?	NC_002947	259644 =	52 (1.100)					coding (1178/1407 nt)	PP_0207	nitrate ABC transporter substrate‑binding protein

TACCGTTGCGCACGAACCAGGCCTGGTTGGCGAGCAATTTGATGCCACTGTCGGCGGCCTGGGCGTAGATGGCGCGGATGTCCTTGCCCTCCTGCTCCAGCTGGGCCAAGGCACCAAGGGCGGCCTCCGGCGAAGTGTAGTGGCGGACCTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/259757‑259606 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttgGTGCCTTGGCCCAGCTGGAGCAGGAGGGCAAGGACATCCGCGCCATCTACGCCCAGGCCGCCGACAGTGGCATCAAATTGCTCGCCAACCAGGCCTGGTTCGTGCGCAACGGTAAAGGCGAACTGGCGGCATTCCTGCTCAAGGACC  >  NC_002947/259644‑259790                                                                                                                                                                                                                                                                                                             TACCGTTGCGCACGAACCAGGCCTGGTTGGCGAGCAATTTGATGCCACTGTCGGCGGCCTGGGCGTAGATGGCGCGGATGTCCTTGCCCTCCTGCTCCAGCTGGGCCAAGGCACCAAGGGCGGCCTCCGGCGAAGTGTAGTGGCGGACC                                                                                                                                                        >  6:276384/1‑149  ACCGTTGCGCACGAACCAGGCCTGGTTGGCGAGCAATTTGATGCCACTGTCGGCGGCCTGGGCGTAGATGGCGCGGATGTCCTTGCCCTCCTGCTCCAGCTGGGCCAAGGCACCAAGGGCGGCCTCCGGCGAAGTGTAGTGGCGGACCT                                                                                                                                                       >  3:44895/1‑149  ACCGTTGCGCACGAACCAGGCCTGGTTGGCGAGCAATTTGATGCCACTGTCGGCGGCCTGGGCGTAGATGGCGCGGATGTCCTTGCCCTCCTGCTCCAGCTGGGCCAAGGCACCAAGGGCGGCCTCCGGCGAAGTGTAGTGGCGGACCT                                                                                                                                                       >  5:78871/1‑149  ACCGTTGCGCACGAACCAGGCCTGGTTGGCGAGCAATTTGATGCCACTGTCGGCGGCCTGGGCGTAGATGGCGCGGATGTCCTTGCCCTCCTGCTCCAGCTGGGCCAAGGCACCAAGGGCGGCCTCCGGCGAAGTGTAGTGGCGGACC                                                                                                                                                        <  2:137659/148‑1  ACCGTTGCGCACGAACCAGGCCTGGTTGGCGAGCAATTTGATGCCACTGTCGGCGGCCTGGGCGTAGATGGCGCGGATGTCCTTGCCCTCCTGCTCCAGCTGGGCCAAGGCACCAAGGGCGGCCTCCGGCGAAGTGTAGTGGCGGACC                                                                                                                                                        <  7:111923/148‑1                                                                                       CCCTCCTGCTCCAGCTGGGCCAAGGCACCAAGGGCGGCCTCCGGCGAAGTGTAGTGGCGGACCTT                                                                                                                                                      <  7:195310/65‑1                                                                                       CCCTCCTGCTCCAGCTGGGCCAAGGCACCAAGGGCGGCCTCCGGCGAAGTGTAGTGGCGGACCTT                                                                                                                                                      >  8:195310/1‑65                                                                                                                 ACCAAGGGCGGCCTCCGGCGAAGTGTAGTGGCGGACCTTGGTGCCTTGGCCCAGCTGGAGCAGGAGGGCAAGGACATCCGCGCCATCTACGCCCAGGCCGCCGACAGTGGCATCAAATTGCTCGCCAACCAGGCCTGGTTCGTGCGCAA                                        >  3:95846/1‑149                                                                                                                 ACCAAGGGCGGCCTCCGGCGAAGTGTAGTGGCGGACCTTGGTGCCTTGGCCCAGCTGGAGCAGGAGGGCAAGGACATCCGCGCCATCTACGCCCAGGCCGCCGACAGTGGCATCAAATTGCTCGCCAACCAGGCCTGGTTCGTGC                                            <  7:12961/145‑1                                                                                                                 ACCAAGGGCGGCCTCCGGCGAAGTGTAGTGGCGGACCTTGGTGCCTTGGCCCAGCTGGAGCAGGAGGGCAAGGACATCCGCGCCATCTACGCCCAGGCCGCCGACAGTGGCATCAAATTGCTCGCCAACCAGGCCTGGTTCGTGC                                            >  8:12961/1‑145                                                                                                                    AAGGGCGGCCTCCGGCGAAGTGTAGTGGCGGACCTTGGTGCCTTGGCCAAGCTGGAGCAGGAGGGCAAGGACATCCGCGCCATCTACGCCCAGGCCGCCGACACTGGCATCAAATTGCTCGCCAACCAGGCCTGCTTCCTTCGCAACGG                                     >  3:16911/1‑149                                                                                                                                                    CCTTGGTGCCTTGGCCCAGCTGGAGCAGGAGGGCAAGGACATCCGCGCCATCTACGCCCAGGCCGCCGACAGTGGCATCAAATTGCTCGCCAACCAGGCCTGGTTCGTGCGCAACGGTAAAGGCGAACTGGCGGCATTCCTGCTCAAGG     <  4:81821/149‑1                                                                                                                                                     CTTGGTGCCTTGGCCCAGCTGGAGCAGGAGGGCAAGGACATCCGCGCCATCTACGCCCAGGCCGCCGACAGTGGCATCAAATTGCTCGCCAACC‑GGCCTGGTTCGTGCGCAACGGTAAAGGCGAACTGGCGGCATTCCTGCTCAAGGAC   >  1:178547/1‑149                                                                                                                                                        GGTGCCTTGGCCCAGCTGGAGCAGGAGGGCAAGGACATCCGCGCCATCTACGCCCAGGCCGCCGACAGTGGCATCAAATTGCTCGCCAACCAGGCCTGGTTCGTGCGCAACGGTAAAGGCGAACTGGCGGCATTCCTGCTCAAGGACC  <  8:55957/148‑1                                                                                                                                                                                                                                                                                                             TACCGTTGCGCACGAACCAGGCCTGGTTGGCGAGCAATTTGATGCCACTGTCGGCGGCCTGGGCGTAGATGGCGCGGATGTCCTTGCCCTCCTGCTCCAGCTGGGCCAAGGCACCAAGGGCGGCCTCCGGCGAAGTGTAGTGGCGGACCTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/259757‑259606 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttgGTGCCTTGGCCCAGCTGGAGCAGGAGGGCAAGGACATCCGCGCCATCTACGCCCAGGCCGCCGACAGTGGCATCAAATTGCTCGCCAACCAGGCCTGGTTCGTGCGCAACGGTAAAGGCGAACTGGCGGCATTCCTGCTCAAGGACC  >  NC_002947/259644‑259790

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.