New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	539377 =	60 (1.220)	4 (0.080)	4/246	NT	6.1%	coding (1755/4074 nt)	rpoB	DNA‑directed RNA polymerase subunit beta
	?	NC_002947	539420 =	66 (1.390)					coding (1798/4074 nt)	rpoB	DNA‑directed RNA polymerase subunit beta

ATCAGTTGCTTCTTGTCGTTCATCGCGGCCGAAGCCTGTGCGATGACGTGATCTGCCTCTTCGATTGCCGACAGGAACACGATGTCGTCGCTGACAACGCCTTCCTTCACCACGCGGTACGGGCTTTCCAGGAAGCCGTACTGGTTGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/539526‑539377 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggtgAAGGAAGGCGTTGTCAGCGACGACATCGTGTTCCTGTCGGCAATCGAAGAGGCAGATCACGTCATCGCACAGGCTTCGGCCGCGATGAACGACAAGAAGCAACTGATCGATGAGCTGGTAGCAGTTC  >  NC_002947/539420‑539546                                                                                                                                                                                                                                                                                       ATCAGTTGCTTCTTGTCGTTCATCGCGGCCGAAGCCTGTGCGATGACGTGATCTGCCTCTTCGATTGCCGACAGGAACACGATGTCGTCGCTGACAACGCCTTCCTTCACCACGCGGTACGGGCTTTCCAGGAAGCCGTACTGGTTGGT                                                                                                                                  >  3:3434/1‑149                                                                                                  CGCCTTCCTTCACCACGCGGTACGGGCTTTCCAGGAAGCCGTACTGGTTGGTGAAGGAAGGCGTTGTCAGCGACGACATCGTGTTCCTGTCGGCAATCGAAGAGGCAGATCACGTCATCGCACAGGCTTCGGCCGCGATGAAC                                       >  1:146842/1‑143                                                                                                  CGCCTTCCTTCACCACGCGGTACGGGCTTTCCAGGAAGCCGTACTGGTTGGTGAAGGAAGGCGTTGTCAGCGACGACATCGTGTTCCTGTCGGCAATCGAAGAGGCAGATCACGTCATCGCACAGGCTTCGGCCGCGATGAAC                                       <  2:146842/143‑1                                                                                                         CTTCACCACGCGGTACGGGCTTTCCAGGAAGCCGTACTGGTTGGTGAAGGAAGGCGTTGTCAGCGACGACATCGTGTTCCTGTCGGCAATCGAAGAGGCAGATCACGTCATCGCACAGGCTTCGGCCGCGATGAACGAC                                    <  1:61493/139‑1                                                                                                         CTTCACCACGCGGTACGGGCTTTCCAGGAAGCCGTACTGGTTGGTGAAGGAAGGCGTTGTCAGCGACGACATCGTGTTCCTGTCGGCAATCGAAGAGGCAGATCACGTCATCGCACAGGCTTCGGCCGCGATGAACGAC                                    >  2:61493/1‑139                                                                                                                                                    GTGAAGGAAGGCGTTGTCAGCGACGACATCGTGTTCCTGTCGGCAATCGAAGAGGCAGATCACGTCATCGCACAGGCTTCGGCCGCGATGAACGACAAGAAGCAACTGATCGATGAGCTGGTAGCAGTTC  >  7:153589/1‑130                                                                                                                                                    GTGAAGGAAGGCGTTGTCAGCGACGACATCGTGTTCCTGTCGGCAATCGAAGAGGCAGATCACGTCATCGCACAGGCTTCGGCCGCGATGAACGACAAGAAGCAACTGATCGATGAGCTGGTAGCAGTTC  <  8:153589/130‑1                                                                                                                                                                                                                                                                                       ATCAGTTGCTTCTTGTCGTTCATCGCGGCCGAAGCCTGTGCGATGACGTGATCTGCCTCTTCGATTGCCGACAGGAACACGATGTCGTCGCTGACAACGCCTTCCTTCACCACGCGGTACGGGCTTTCCAGGAAGCCGTACTGGTTGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/539526‑539377 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggtgAAGGAAGGCGTTGTCAGCGACGACATCGTGTTCCTGTCGGCAATCGAAGAGGCAGATCACGTCATCGCACAGGCTTCGGCCGCGATGAACGACAAGAAGCAACTGATCGATGAGCTGGTAGCAGTTC  >  NC_002947/539420‑539546

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.