New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	670925 =	57 (1.150)	4 (0.090)	4/242	NT	7.3%	intergenic (+12/‑21)	pbpC/PP_0573	peptidoglycan glycosyltransferase/hypothetical protein
	?	NC_002947	670972 =	47 (1.010)					coding (27/1725 nt)	PP_0573	hypothetical protein

GGCAACGGGTCGGCGTGGGCAGCAAGTGCCCAAAGCAGCAACATCAGGGGCACGACCAGAGGACGCATAGGGCACTCCATGTTCCCATGGGTTGCGGGGCACCAGCCGGTCACACCCGTCACTTGCAAGCGTAGGTGCTGGCCCGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/671073‑670925 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggctgGTGCCCCGCAACCCATGGGAACATGGAGTGCCCTATGCGTCCTCTGGTCGTGCCCCTGATGTTGCTGCTTTGGGCACTTGCTGCCCACGCCGACCCGTTGCCGGGGTTTCTCGACAGCCATGAATACGAGCGGCGTCTGCCCAGC  >  NC_002947/670972‑671116                                                                                                                                                                                                                                                                                                        GGCAACGGGTCGGCGTGGGCAGCAAGTGCCCAAAGCAGCAACATCAGGGGCACGACCAGAGGACGCATAGGGCACTCCATGTTCCCATGGGTTGCGGGGCACCAGCCGGTCACACCCGTCACTTGCAAGCGTAGGTGCTGGCCCGGCTG                                                                                                                                                   >  2:219762/1‑149                                                                                                   GCACCAGCCGGTCACACCCGTCACTTGCAAGCGTAGGTGCTGGCCCGGCTGGTGCCCCGCAACCCATGGGACCATGGAGTGCCCTATGCGTCCTCTGGTCGTGCCCCTGATGTTGCTGATTTGGGAACTTGGTGCCACCGCGAACCCGT                                                 >  8:120431/1‑149                                                                                                      CCAGCCGGTCACACCCGTCACTTGCAAGCGTAGGTGCTGGCCCGGCTGGTGCCCCGCAACCCATGGGAACATGGAGTGGCCTATGCGTCCTCTGGTCGTGCCCCTGATGTTGCTGCTTTGGGCACTTGCTGCCCACGCCGACCCGTTGC                                              >  7:205415/1‑149                                                                                                       CAGCCGGTCACACCCGTCACTTGCAAGCGTAGGTGCTGGCCCGGCTGGTGCCCCGCAACCCATGGGAACATGGAGTGCCCTATGCGTCCTCTGGTCGAGCCCCGGATGTGGCTGCTTTGGGCACTTGCTGCCCACGCCGACCCGTTGCC                                             >  2:288973/1‑149                                                                                                             GTCACACCCGTCACTTGCAAGCGTAGGTGCTGGCCCGGCTGGTGCCCCGCAACCCATGGGAACATGGAGTGCCCTATGCGTCGTCTGGTCGTGCCCCTGATGTTGCTGCTTTGGGCACTTGCTGCCCACGCCGACCCGTTGCCGGGGgt                                       >  4:143227/1‑147                                                                                                                                                 GGCTGGTGACCCGAAAACCAAGGGAACATCGAGTGCCCTATGCGTCATCTTGTCGTGCCCCTGATGTTGCTGCTTTGGGCACTTGATGCCCACACCGACCCGTGGCCGGCGTTACTCGACAGCCATGAATACGACCGCCGTCTGCCCAG   >  8:288678/1‑149                                                                                                                                                  GCTGGTGCCCCGCAACCCATGGGAACATGGAGTGCCCTATGCGTCCTCTGGTCGTGCCCCTGATGTTGCTGCTTTGGGCACTTGCTGCCCACGCCGACCCGTTGCCGGGGTTTCTCGACAGCCATGAATACGAGCGGCGTCTGCCCAGC  <  8:69780/149‑1                                                                                                                                                                                                                                                                                                        GGCAACGGGTCGGCGTGGGCAGCAAGTGCCCAAAGCAGCAACATCAGGGGCACGACCAGAGGACGCATAGGGCACTCCATGTTCCCATGGGTTGCGGGGCACCAGCCGGTCACACCCGTCACTTGCAAGCGTAGGTGCTGGCCCGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/671073‑670925 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggctgGTGCCCCGCAACCCATGGGAACATGGAGTGCCCTATGCGTCCTCTGGTCGTGCCCCTGATGTTGCTGCTTTGGGCACTTGCTGCCCACGCCGACCCGTTGCCGGGGTTTCTCGACAGCCATGAATACGAGCGGCGTCTGCCCAGC  >  NC_002947/670972‑671116

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.