New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 88571464 (1.300)5 (0.110) 5/244 NT 7.4% coding (1625/2718 nt) PP_0767 LuxR family transcriptional regulator
?NC_002947 = 885737 64 (1.360)coding (1648/2718 nt) PP_0767 LuxR family transcriptional regulator

GCCTATTGCGGCGAAGCGCTGCAGAGCCTGCCGAGCAAGCGCTACGGCCAACGTCTGGTGTGTTTGTCGACGCTGTCCAACCTGGCCATTGCCGATGGCGACTTCTGGCGGGCCCGAGGCTGGAACCGCGAGGCCCTGGAGCTGGCCCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/885563‑885714
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcgCCTCGAACAAGGGGTTACCGACCCGCTGGGCCAGCTCCAGGGCCTCGCGGTTCCAGCCTCGGGCCCGCCAGAAGTCGCCATCGGCAATGGCCAGGTTGGACAGCGTCGACAAACACACCAGACGTTGGCCGTAGCGCTTGCTCGGCA  <  NC_002947/885737‑885591
                                                                                                                                                                                                                                                                                                            
GCCTATTGCGGCGAAGCGCTGCAGAGCCTGCCGAGCAAGCGCTACGGCCAACGTCTGGTGTGTTTGTCGACGCTGTCCAACCTGGCCATTGCCGATGGCGACTTCTGGCGGGCCCGAGGCTGGAACCGCGAGGCCCTGGAGCTGGCC                                                                                                                                                          <  7:74287/147‑1
  CTATTGCGGCGAAGCGCTGCAGAGCCTGCCGAGCAAGCGCTACGGCCAACGTCTGGTGTGTTTGTCGACGCTGTCCAACCTGGCCATTGCCGATGGCGACTTCTGGCGGGCCCGAGGCTGGAACCGCGAGGCCCTGGAGCTGGCCCAGC                                                                                                                                                      <  6:161200/149‑1
  CTATTGCGGCGAAGCGCTGCAGAGCCTGCCGAGCAAGCGCTACGGCCAACGTCTGGTGTGTTTGTCGACGCTGTCCAACCTGGCCATTGCCGATGGCGACTTCTGGCGGGCCCGAGGCTGGAACCGCGAGGCCCTGGAGCTGGCCCAGC                                                                                                                                                      >  7:181111/1‑149
    ATTGCGGCGAAGCGCTGCAGAGCCTGCCGAGCATAGCGCTACGGCCAACGTCTGGTGTGTTTGTCGACGCTGTCCAACCTGGCCATTGCCGATGGCGACTTCGGGCGGGCCCGAGGCTGGAACCGCGAGGCCCTGGAGCTGGCCCAGCG                                                                                                                                                     >  1:43183/1‑149
             AAGCGCTGCAGAGCCTGCCGAGCAAGCGCTACGGCCAACGTCTGGTGTGTTTGTCGACGCTGTCCAACCTGGCCATTGCCGATGGCGACTTCTGGCGGGCCCGAGGCTGGAACCGCGAGGCCCTGGAGCTGGCC                                                                                                                                                          <  7:220227/134‑1
             AAGCGCTGCAGAGCCTGCCGAGCAAGCGCTACGGCCAACGTCTGGTGTGTTTGTCGACGCTGTCCAACCTGGCCATTGCCGATGGCGACTTCTGGCGGGCCCGAGGCTGGAACCGCGAGGCCCTGGAGCTGGCC                                                                                                                                                          >  8:220227/1‑134
                            TGCCGAGCAAGCGCTACGGCCAACGTCTGGTGTGTTTGTCGACGCTGTCCAACCTGGCCATTGCCGATGGCGACTTCTGGCGGGCCCGAGGCTGGAACCGCGAGGCCCTGGAGCTGGCCCAGCGCCTCGAACAAGGGGTTACCGACCCG                                                                                                                            >  6:112621/1‑149
                              CCGAGCAAGCGCTACGGCCAACGTCTGGTGTGTTTGTCGACGCTGTCCAACCTGGCCATTGCCGATGGCGACTTCTGGCGGGCCCGAGGCTGGAACCGCGAGGCCCTGGAGCTGGCCCAGCGCCTCGAACAAGGGGTTACCGACCCGC                                                                                                                           <  4:282605/148‑1
                                   CAAGCGCTACGGCCAACGTCTGGTGTGTTTGTCGACGCTGTCCAACCTGGCCATTGCCGATGGCGACTTCTGGCGGGCCCGAGGCTGGAACCGCGAGGCCCTGGAGCTGGCCCAGCGCCTCGAACAAGGGGTTACCGACCCGCTGGGCC                                                                                                                     <  5:112621/149‑1
                                    AAGCGCTACGGCCAACGTCTGGTGTGTTTGTCGACGCTGTCCAACCTGGCCATTGCCGATGGCGACTTCTGGCGGGCCCGAGGCTGGAACCGCGAGGCCCTGGAGCTGGCCCAGCGCCTCGAACAAGGGGTTACCGACCCGCTGG                                                                                                                        >  5:233067/1‑145
                                    AAGCGCTACGGCCAACGTCTGGTGTGTTTGTCGACGCTGTCCAACCTGGCCATTGCCGATGGCGACTTCTGGCGGGCCCGAGGCTGGAACCGCGAGGCCCTGGAGCTGGCCCAGCGCCTCGAACAAGGGGTTACCGACCCGCTGG                                                                                                                        <  6:233067/145‑1
                                                                                                                                                       CGCCTCGAACAAGGGGTTACCGACCCGCTGGGCCAGCTCCAGGGCCTCGCGGTTCCAGCCTCGGGCCCGCCAGAAGTCGCCATCGGCAATGGCCAGGTTGGACAGCGTCGACAAACACACCAGACGTTGGCCGTAGCGCTTGCTCGGCA  <  4:197977/149‑1
                                                                                                                                                       CGCCTCGAACAAGGGGTTACCGACCCGCTGGGCCAGCTCCAGGGCCTCGCGGTTCCAGCCTCGGGCCCGCCAGAAGTCGCCATCGGCAATGGCCAGGTTGGACAGCGTCGACAAACACACCAGACGTTGGCCGTAGCGCTTGCTCGGCA  <  7:86731/149‑1
                                                                                                                                                                                                                                                                                                            
GCCTATTGCGGCGAAGCGCTGCAGAGCCTGCCGAGCAAGCGCTACGGCCAACGTCTGGTGTGTTTGTCGACGCTGTCCAACCTGGCCATTGCCGATGGCGACTTCTGGCGGGCCCGAGGCTGGAACCGCGAGGCCCTGGAGCTGGCCCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/885563‑885714
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcgCCTCGAACAAGGGGTTACCGACCCGCTGGGCCAGCTCCAGGGCCTCGCGGTTCCAGCCTCGGGCCCGCCAGAAGTCGCCATCGGCAATGGCCAGGTTGGACAGCGTCGACAAACACACCAGACGTTGGCCGTAGCGCTTGCTCGGCA  <  NC_002947/885737‑885591

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.