New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1195712	47 (0.950)	3 (0.060)	3/250	NT	5.6%	coding (202/426 nt)	xcpP	type II secretion pathway protein XcpP
	?	NC_002947	= 1195767	55 (1.140)					coding (257/426 nt)	xcpP	type II secretion pathway protein XcpP

CACACCCGGCCACGGCGCCTGCGGTGGCCGACAGCCCGCTGCCCGGGCTGATGGTTGGTCACTGGCAGGCGCCGCCCGACGACGGCGCCATCACCATCACTCGTCTGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1195602‑1195712 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcAGCACCACCACACTGGCGGCCAATGGCTGGGCCTTGAGGCCGCCGAGGTATTGCAGCGGCAGACGAGTGATGGTGATGGCGCCGTCGTCGGGCGGCGCCTGCCAGTGACCAACCATCAGCCCGGGCAGCGGGCTGTCGGCCACCGCAG  <  NC_002947/1195767‑1195620                                                                                                                                                                                                                                                                     CACACCCGGCCACGGCGCCTGCGGTGGCCGACAGCCCGCTGCCCGGGCTGATGGTTGGTCACTGGCAGGCGCCGCCCGACGACGGCGCCATCACCATCACTCGTCTGCCGCAGCACCACCACACTGGCGGCCAATGGCTGGGCCTTGAG                                                                                                                >  5:66720/1‑149                      CGGTGGCCGACAGCCCGCTGCCCGGGCTGATGGTTGGTCACTGGCAGGCGCCGCCCGACGACGGCGCCATCACCATCACTCGTCTGCCGCAGCACCACCACACTGGCGGCCAATGGCTGGGCCTTGAGGCCGCCGAGGTATTGCAGCGG                                                                                           <  6:66720/149‑1                        GTGGCCGACAGCCCGCTGCCCGGTCTGATGGTTGGGCACTGGCAGGCGCCGCCCGACGACGGCGCCATCACCATCACTCGTCTGCCGCAGCACCACCACACTGGCGGCCAATGGCTGGGCCTTGAGGCCGCCGAGGTATTGCAGCGGCA                                                                                         <  4:191829/149‑1                                                                                                               CAGCACCACCACACTGGCGGCCAATGGCTGGGCCTTGAGGCCGCCGAGGTATTGCAGCGGCAGACGAGTGATGGTGATGGCGCCGTCGTCGGGCGGCGCCTGCCAGTGACCAACCATCAGCCCGGGCAGCGGGCTGTCGGCCACCGCAG  >  8:29696/1‑149                                                                                                               CAGCACCACCACACTGGCGGCCAATGGCTGGGCCTTGAGGCCGCCGAGGTATTGCAGCGGCAGACGAGTGATGGTGATGGCGCCGTCGTCGGGCGGCGCCTGCCAGTGACCAACCATCAGCCCGGGCAGCGGGCTGTCGGCCACCGCAG  >  8:34594/1‑149                                                                                                                                                                                                                                                                     CACACCCGGCCACGGCGCCTGCGGTGGCCGACAGCCCGCTGCCCGGGCTGATGGTTGGTCACTGGCAGGCGCCGCCCGACGACGGCGCCATCACCATCACTCGTCTGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1195602‑1195712 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcAGCACCACCACACTGGCGGCCAATGGCTGGGCCTTGAGGCCGCCGAGGTATTGCAGCGGCAGACGAGTGATGGTGATGGCGCCGTCGTCGGGCGGCGCCTGCCAGTGACCAACCATCAGCCCGGGCAGCGGGCTGTCGGCCACCGCAG  <  NC_002947/1195767‑1195620

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.