New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1420319	52 (1.050)	4 (0.090)	4/242	NT	7.5%	intergenic (‑279/‑202)	PP_mr17/PP_1245	C4 ncRNA/hypothetical protein
	?	NC_002947	= 1420345	50 (1.070)					intergenic (‑305/‑176)	PP_mr17/PP_1245	C4 ncRNA/hypothetical protein

CGCCCTACAAGGAAGGGGATAATTCTGAGTAGAAGTTGTAGGACGGATTTCTACTAATCAATCAGACAGGCTTCCTGCAACATTTTGTCTTGAACTGCCAATGGCACCTTGGGCTACAATGCGGCGCTCTGATACGCCACTCACGCCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1420170‑1420319 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcccagCGCGCGTAATCATTACGGCGTGTGGCCTGGGCGTGAGTGGCGTATCAGAGCGCCGCATTGTAGCCCAAGGTGCCATTGGCAGTTCAAGACAAAATGTTGCAGGAAGCCTGTCTGATTGATTAGTAGAAATCCGTCCTACAACTTCTA  <  NC_002947/1420345‑1420199                                                                                                                                                                                                                                                                                                           CGCCCTACAAGGAAGGGGATAATTCTGAGTAGAAGTTGTAGGACGGATTTCTACTAATCAATCAGACAGGCTTCCTGCAACATTTTGTCTTGAACTGCCAATGGCACCTTGGGCTACAATGCGGCGCTCTGATACGCCACTCACGCC                                                                                                                                                        >  5:129724/1‑147  GCCCTACAAGGAAGGGGATAATTCTGAGTAGAAGTTGTAGGACGGATTTCTACTAATCAATCAGACAGGCTTCCTGCAACATTTTGTCTTGAACTGCCAATGGCACCTTGGGCTACAATGCGGCGCTCTGATACGCCACTCACGCCCAG                                                                                                                                                     <  6:146012/149‑1                       TTCTGAGTAGAAGTTGTAGGACGGATTTCTACTAATCAATCAGACAGGCTTCCTGCAACATTTTGTCTTGAACTGCCAATGGCACCTTGGGCTACAATGCGGCGCTCTGATACGCCACTCACGCCCAGCGCGCGTAATCATTACGGCGT                                                                                                                                >  4:250376/1‑149                          TGAGTAGAAGTTGTAGGACGGATTTCTACTAATCAATCAGACAGGCTTCCTGCAACATTTTGTCTTGAACTGCCAATGGCACCTTGGGCTACAATGCGGCGCTCTGATACGCCACTCACGCCCAG                                                                                                                                                     >  1:310777/1‑125                          TGAGTAGAAGTTGTAGGACGGATTTCTACTAATCAATCAGACAGGCTTCCTGCAACATTTTGTCTTGAACTGCCAATGGCACCTTGGGCTACAATGCGGCGCTCTGATACGCCACTCACGCCCAG                                                                                                                                                     <  2:310777/125‑1                                    TTGTAGGACGGATTTCTACTAATCAATCAGACAGGCTTCCTGCAACATTTTGTCTTGAACTGCCAATGGCACCTTGGGCTACAATGCGGCGCTCTGATACGCCACTCACGCCCAGCGCGCGTAATCATTACGGCGTGTGGCCTGGGCGT                                                                                                                   <  3:250376/149‑1                                                                 GACAGGCTTCCTGCAACATTTTGTCTTGAACTGCCAATGGCACCTTGGGCTACAATGCGGCGCTCTGATACGCCACTCACGCCCAGCGCGCGTAATCATTACGGCGTGTGGCCTGGGCGTGAG                                                                                                                >  5:190021/1‑123                                                                 GACAGGCTTCCTGCAACATTTTGTCTTGAACTGCCAATGGCACCTTGGGCTACAATGCGGCGCTCTGATACGCCACTCACGCCCAGCGCGCGTAATCATTACGGCGTGTGGCCTGGGCGTGAG                                                                                                                <  6:190021/123‑1                                                                                                                                                 GCCCAGCGCGCGTAATCATTACGGCGTGTGGCCTGGGCGTGAGTGGCGTATCAGAGCGCCGCATTGTAGCCCAAGGTGCCATTGGCAGTTCAAGACAAAATGTTGCAGGAAGCCTGTCTGATTGATTAGTAGAAATCCGTCCTACAAC       <  8:189451/148‑1                                                                                                                                                   CCAGCGCGCGTAATCATTACGGCGTGTGGCCTGGGCGTGAGTGGCGTATCAGAGCGCCGCATTGTAGCCCAAGGTGCCATTGGCAGTTCAAGACAAAATGTTGCAGGAAGCCTGTCTGATTGATTAGTAGAAATCCGTCCTACAACTTC    >  1:242414/1‑149                                                                                                                                                    CAGCGCGCGTAATCATTACGGCGTGTGGCCTGGGCGTGAGTGGCGTATCAGAGCGCCGCATTGTAGCCCAAGGTGCCATTGGCAGTTCAAGACAAAATGTTGCAGGAAGCCTGTCTGATTGATTAGTAGAAATCCGTCCTACAACTTCT   <  3:104555/149‑1                                                                                                                                                     AGCGCGCGTAATCATTACGGCGTGTGGCCTGGGCGTGAGTGGCGTATCAGAGCGCCGCATTGTAGCCCAAGGTGCCATTGGCAGTTCAAGACAAAATGTTGCAGGAAGCCTGTCTGATTGATTAGTAGAAATCCGTCCTACAACTTCTA  <  3:25896/149‑1                                                                                                                                                                                                                                                                                                           CGCCCTACAAGGAAGGGGATAATTCTGAGTAGAAGTTGTAGGACGGATTTCTACTAATCAATCAGACAGGCTTCCTGCAACATTTTGTCTTGAACTGCCAATGGCACCTTGGGCTACAATGCGGCGCTCTGATACGCCACTCACGCCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1420170‑1420319 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcccagCGCGCGTAATCATTACGGCGTGTGGCCTGGGCGTGAGTGGCGTATCAGAGCGCCGCATTGTAGCCCAAGGTGCCATTGGCAGTTCAAGACAAAATGTTGCAGGAAGCCTGTCTGATTGATTAGTAGAAATCCGTCCTACAACTTCTA  <  NC_002947/1420345‑1420199

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.