New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1487006 =	37 (0.750)	10 (0.260)	9/196	NT	29.3%	intergenic (+22/+108)	yhdZ/degS	amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS
	?	NC_002947	1487096 =	20 (0.530)					intergenic (+112/+18)	yhdZ/degS	amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS

TTGAAGCTGATCGCCGAGGTGGGGCTGCGGCCGCCACCGGCGCCGGCTGCCAGCCAGGAAGAGAAATAAACCCAGGGCCGCGTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGGAATTACGCAGGCTCCAAAGCCAGCGCTAAACCTGTGGGAGCGGGC‑GT‑‑GCCCGCGAAGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1487182‑1487006 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgtgggagcgggc‑gt‑‑gcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTGGGCTTGATCCGCGCTACC  >  NC_002947/1487096‑1487243                                                                                                                                                                                                                                                                                                                                          TTGAAGCTGATCGCCGAGGTGGGGCTGCGGCCGCCACCGGCGCCGGCTGCCAGCCAGGAAGAGAAATAAACCCAGGGCCGCGTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGGAATTACGCAGGCTCCAAAGCCAGCGCTAAACC                                                                                                                                                                                     >  3:236565/1‑149    AAGCTGATCGCCGAGGTGGGGCTGCGGCCGCCACCGGCGCCGGCTGCCAGCCAGGAAGAGAAATAAACCCAGGGCCGCGTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGGAATTACGCAGGCTCCAAAGCCAGCGCTAAACCTGT                                                                                                                                                                                  <  5:109005/149‑1    AAGCTGATCGCCGAGGTGGGGCTGCGGCCGCCACCGGCGCCGGCTGCCAGCCAGGAAGAGAAATAAACCCAGGGCCGCGTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGGAATTACGCAGGCTCCAAAGCCAGCGCTAAACCTGT                                                                                                                                                                                  <  7:258718/149‑1             GCCGAGGTGGGGCTGCGGCCGCCACCGGCGCCGGCTGCCAGCCAGGAAGAGAAATAAACCCAGGGCCGCGTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGGAATTACGCAGGCTCCAAAGCCAGCGCTAAACCTGTGGGAGCGG                                                                                                                                                                          <  4:236565/148‑1              CCGAGGTGGGGCTGCGGCCGCCACCGGCGCCGGCTGCCAGCCAGGAAGAGAAATAAACCCAGGGCCGCGTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGGAATTACGCAGGCTCCAAAGCCAGCGCTAAACCTGTGGGAGCGGGC                                                                                                                                                                        >  6:99656/1‑149                    TGGGGCTGCGGCCGCCACCGGCGCCGGCTGCCAGCCAGGAAGAGAAATAAACCCAGGGCCGCGTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGGAATTACGCAGGCTCCAAAGCCAGCGCTAAACCTGTGGGAGCGGGC‑GT‑‑GCCC                                                                                                                                                               <  2:21645/149‑1                       GGCTGCGGCCGCCACCGGCGCCGGCTGCCAGCCAGGAAGAGAAATAAACCCAGGGCCGCGTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGGAATTACGCAGGCTCCAACGCCAGCGCTAAACCTGTGGGAGCGGGC‑GT‑‑GCCCGC                                                                                                                                                             >  1:76167/1‑148                                   CACCGGCGCCGGCTGCCAGCCAGGAAGAGAAATAAACCCAGGGCCGCGTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGGAATTACGCAGGCTCCAAAGCCAGCGCTAAACCTGT                                                                                                                                                                                  <  6:167465/118‑1                                   CACCGGCGCCGGCTGCCAGCCAGGAAGAGAAATAAACCCAGGGCCGCGTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGGAATTACGCAGGCTCCAAAGCCAGCGCTAAACCTGT                                                                                                                                                                                  >  5:167465/1‑118                                                                                 CGTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGGAATTACGCAGGCTCCAAAGCCAGCGCTAAACCTGTGGGAGCGGG                                                                                                                                                                         <  4:266877/81‑1                                                                                 CGTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGGAATTACGCAGGCTCCAAAGCCAGCGCTAAACCTGTGGGAGCGGG                                                                                                                                                                         >  3:266877/1‑81                                                                                                   GCACGCCCGCTCCCACAGGAATTACGCAGGCTCCAAAGCCAGCGCTAAACCTGTGGGAGCGGGCGGTAGGCCCGCGAAGGGCTGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCC                                                                                    >  1:94858/1‑148                                                                                                       GCCCGCTCACACAGGAATTACGCAGGCTCCAAAGCCAGCGTAATTCCTGTGGGAGAGGGC‑GT‑‑GCACGCGAAGGGCAGCAACGCGGCCCTGGGGTTATTTATGTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGACCCACagcgg                                                                            >  4:183164/1‑144                                                                                                               CCACAGGAATTACGCAGGCTCCAAAGCCAGCGCTAAACCTGTGGGAGCGGGC‑GT‑‑GCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGC                                                                    >  2:41107/1‑149                                                                                                                 ACAGGAATTACGCAGGCTCCAAAGCCAGCGCTAAACCTGTGGGAGCGGGC‑GT‑‑GCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTT                                                                  >  5:34543/1‑149                                                                                                                     GAATTACGCAGGCTCCAAAGCCAGCGCTAAACCTGTGGGAGCGGGC‑GT‑‑GCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAAC                                                              >  5:156244/1‑149                                                                                                                           CGCAGGCTCCAAAGCCAGCGCTAAACCTGTGGGAGCGGGC‑GT‑‑GCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAAC                                                              <  5:121830/143‑1                                                                                                                           CGCAGGCTCCAAAGCCAGCGCTAAACCTGTGGGAGCGGGC‑GT‑‑GCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAAC                                                              >  6:121830/1‑143                                                                                                                              AGGCTCCAAAGCCAGCGCTAAACCTGTGGGAGCGGGC‑GT‑‑GCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCG                                                     >  2:299426/1‑149                                                                                                                              AGGCTCCAAAGCCAGCGCTAAACCTGTGGGAGCGGGC‑GT‑‑GCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTT                                                                                                                              >  4:14959/1‑76                                                                                                                              AGGCTCCAAAGCCAGCGCTAAACCTGTGGGAGCGGGC‑GT‑‑GCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTT                                                                                                                              <  3:14959/76‑1                                                                                                                                                   ACCTGTGGGAGCGGGC‑GT‑‑GCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTT                                <  6:156244/149‑1                                                                                                                                                    CCTGTGGGAGCGGGC‑GT‑‑GCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTA                               <  1:41107/149‑1                                                                                                                                                       GTGGGAGCGGGC‑GT‑‑GCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATC                             <  5:45508/148‑1                                                                                                                                                       GTGGGAGCGGGC‑GT‑‑GCCCGCGAAGGGCCGCAACGCGGCCCGGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCCCCTAGGCGATCAGCTTCAACTTCTGCCCGTTGCGCATCAACACGATGGTTATC                             >  6:45508/1‑148                                                                                                                                                        TGGGAGCGGGC‑GT‑‑GCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATC                             <  1:299426/147‑1                                                                                                                                                           GAGCGGGC‑GT‑‑GCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTC                        <  6:34543/149‑1                                                                                                                                                            AGCGGGC‑GT‑‑GCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATGTTCTCG                       >  1:305456/1‑149                                                                                                                                                                 GC‑GT‑‑GCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTGGG                  <  8:203341/149‑1                                                                                                                                                                 GC‑GT‑‑GCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTT                                                                                                                         >  4:234755/1‑46                                                                                                                                                                 GC‑GT‑‑GCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTT                                                                                                                         <  3:234755/46‑1                                                                                                                                                                  C‑GT‑‑GCCCGCGAAGGGCTGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTGGGC                 <  2:94858/149‑1                                                                                                                                                                  C‑GT‑‑GCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTGGGC                 >  7:164869/1‑149                                                                                                                                                                    GT‑‑GCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTGGGCT                >  4:84760/1‑149                                                                                                                                                                                   GCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTGGGCTTGATCCGCGCTAC   <  7:57408/149‑1                                                                                                                                                                                    CCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTGGGCTTGATCCGCGCTACC  >  3:5215/1‑149                                                                                                                                                                                                                                                                                                                                          TTGAAGCTGATCGCCGAGGTGGGGCTGCGGCCGCCACCGGCGCCGGCTGCCAGCCAGGAAGAGAAATAAACCCAGGGCCGCGTTGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGGAATTACGCAGGCTCCAAAGCCAGCGCTAAACCTGTGGGAGCGGGC‑GT‑‑GCCCGCGAAGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1487182‑1487006 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgtgggagcgggc‑gt‑‑gcccgcgaagggcCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCCGGTGGCGGCCGCAGCCCCACCTCGGCGATCAGCTTCAACTGCTGCCCGTTGCGCATCACCTCGATGGTTATCTTCTCGTTGGGCTTGATCCGCGCTACC  >  NC_002947/1487096‑1487243

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.