| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1487006 = | 37 (0.750) | 10 (0.260) | 9/196 | NT | 29.3% | intergenic (+22/+108) | yhdZ/degS | amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS |
| ? | NC_002947 | 1487096 = | 20 (0.530) | intergenic (+112/+18) | yhdZ/degS | amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS | |||||
TACCGTGGCGAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGC‑‑AC‑GCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCC > NC_002947/1486858‑1487144 | ggtagcgcggatcaagcccaacgagaagataaccatcgaggtgatgcgcaacgggcagcagttgaagctgatcgccgaggtggggctgcggccgccaccggcgccggctgccagccaggaagagaaataaacccagggccgcgttgcgg > 3:5215‑M1/149‑149 (MQ=255) gtagcgcggatcaagcccaacgagaagataaccatcgaggtgatgcgcaacgggcagcagttgaagctgatcgccgaggtggggctgcggccgccaccggcgccggctgccagccaggaagagaaataaacccagggccgcgttgcgGc < 7:57408‑M1/2‑1 (MQ=255) cGAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTcgc < 4:62686/149‑1 (MQ=255) aaCCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCgg < 5:133171/149‑1 (MQ=255) agcccaacgagaagataaccatcgaggtgatgcgcaacgggcagcagttgaagctgatcgccgaggtggggctgcggccgccaccggcgccggctgccagccaggaagagaaataaacccagggccgcgttgcgGCCCTTCGCGGGC‑‑Ac > 4:84760‑M1/135‑149 (MQ=255) gcccaacgagaagataaccatcgaggtgatgcgcaacgggcagcagttgaagctgatcgccgaggtggggctgcggccgccaccggcgccggctgccagccaggaagagaaataaacccagggccgcgttgcgGCCCTTCGCGGGC‑‑AC‑g > 7:164869‑M1/134‑149 (MQ=255) gcccaacgagaagataaccatcgaggtgatgcgcaacgggcagcagttgaagctgatcgccgaggtggggctgcggccgccaccggcgccggctgccagccaggaagagaaataaacccagggccgcgttgcaGCCCTTCGCGGGC‑‑AC‑g < 2:94858‑M1/16‑1 (MQ=255) gTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGC‑‑AC‑Gc > 5:279725/1‑149 (MQ=255) cccaacgagaagataaccatcgaggtgatgcgcaacgggcagcagttgaagctgatcgccgaggtggggctgcggccgccaccggcgccggctgccagccaggaagagaaataaacccagggccgcgttgcgGCCCTTCGCGGGC‑‑AC‑Gc < 8:203341‑M1/17‑1 (MQ=255) cgagaacataaccatcgaggtgatgcgcaacgggcagcagttgaagctgatcgccgaggtggggctgcggccgccaccggcgccggctgccagccaggaagagaaataaacccagggccgcgttgcgGCCCTTCGCGGGC‑‑AC‑GCCCGCt > 1:305456‑M1/128‑149 (MQ=255) gagaagataaccatcgaggtgatgcgcaacgggcagcagttgaagctgatcgccgaggtggggctgcggccgccaccggcgccggctgccagccaggaagagaaataaacccagggccgcgttgcgGCCCTTCGCGGGC‑‑AC‑GCCCGCTc < 6:34543‑M1/23‑1 (MQ=255) cATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGC‑‑AC‑GCCCGCTccc > 3:29484/1‑149 (MQ=255) cATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGC‑‑AC‑GCCCGCTc < 8:295811/147‑1 (MQ=255) aTGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCGGCCCTTCGCGGGC‑‑AC‑GCCCGCTCCca > 1:18392/1‑149 (MQ=255) aTGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGC‑‑AC‑GCCCGCTccc < 6:279725/148‑1 (MQ=255) gataaccatcgtgttgatgcgcaacgggcagaagttgaagctgatcgcctagggggggctgcggccgccaccggcgccggctgccagccaggaagagaaataaaccccgggccgcgttgcgGCCCTTCGCGGGC‑‑AC‑GCCCGCTCCcac > 6:45508‑M1/122‑148 (MQ=255) gataaccatcgaggtgatgcgcaacgggcagcagttgaagctgatcgccgaggtggggctgcggccgccaccggcgccggctgccagccaggaagagaaataaacccagggccgcgttgcgGCCCTTCGCGGGC‑‑AC‑GCCCGCTCCcac < 5:45508‑M1/27‑1 (MQ=255) gataaccatcgaggtgatgcgcaacgggcagcagttgaagctgatcgccgaggtggggctgcggccgccaccggcgccggctgccagccaggaagagaaataaacccagggccgcgttgcgGCCCTTCGCGGGC‑‑AC‑GCCCGCTCCca < 1:299426‑M1/26‑1 (MQ=255) gACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGC‑‑AC‑GCCCGCTCCcaca < 5:141016/148‑1 (MQ=255) gACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGC‑‑AC‑GCCCGCTCCCACAg < 5:279781/149‑1 (MQ=255) gACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGC‑‑AC‑GCCCGCTCCCACAg < 5:131584/149‑1 (MQ=255) taaccatcgaggtgatgcgcaacgggcagcagttgaagctgatcgccgaggtggggctgcggccgccaccggcgccggctgccagccaggaagagaaataaacccagggccgcgttgcgGCCCTTCGCGGGC‑‑AC‑GCCCGCTCCCACAgg < 1:41107‑M1/30‑1 (MQ=255) aaccatcgaggtgatgcgcaacgggcagcagttgaagctgatcgccgaggtggggctgcggccgccaccggcgccggctgccagccaggaagagaaataaacccagggccgcgttgcgGCCCTTCGCGGGC‑‑AC‑GCCCGCTCCCACAGGt < 6:156244‑M1/31‑1 (MQ=255) aGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGC‑‑AC‑GCCCGCTCCCACAGGttt < 5:14376/149‑1 (MQ=255) gggCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGC‑‑AC‑GCCCGCTCCCACAGGtt > 3:275704/1‑147 (MQ=255) gggCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGC‑‑AC‑GCCCGCTCCCACAGGtt > 7:282503/1‑147 (MQ=255) gAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGC‑‑AC‑GCCCGCTCCCACAGGTTTAGCGCTGGCTTTg < 4:275704/148‑1 (MQ=255) cgggcagcagttgaagctgatcgccgaggtggggctgcggccgccaccggcgccggctgccagccaggaagagaaataaacccagggccgcgttgcgGCCCTTCGCGGGC‑‑AC‑GCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCt > 2:299426‑M1/98‑149 (MQ=255) ccGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGC‑‑AC‑GCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGc < 1:311534/149‑1 (MQ=255) gttgaagctgatcgccgaggtggggctgcggccgccaccggcgccggctgccagccaggaagagaaataaacccagggccgcgttgcgGCCCTTCGCGGGC‑‑AC‑GCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCg < 5:121830‑M1/55‑1 (MQ=255) gttgaagctgatcgccgaggtggggctgcggccgccaccggcgccggctgccagccaggaagagaaataaacccagggccgcgttgcgGCCCTTCGCGGGC‑‑AC‑GCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCg > 6:121830‑M1/89‑143 (MQ=255) gttgaagctgatcgccgaggtggggctgcggccgccaccggcgccggctgccagccaggaagagaaataaacccagggccgcgttgcgGCCCTTCGCGGGC‑‑AC‑GCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTc > 5:156244‑M1/89‑149 (MQ=255) aagctgatcgccgaggtggggctgcggccgccaccggcgccggctgccagccaggaagagaaataaacccagggccgcgttgcgGCCCTTCGCGGGC‑‑AC‑GCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCtgt > 5:34543‑M1/85‑149 (MQ=255) aCTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGC‑‑AC‑GCCCGCTCCCACAGGt > 2:193618/1‑114 (MQ=255) aCTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGC‑‑AC‑GCCCGCTCCCACAGGt < 1:193618/114‑1 (MQ=255) aCTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGC‑‑AC‑GCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCtgt < 5:12131/148‑1 (MQ=255) gctgatcgccgaggtggggctgcggccgccaccggcgccggctgccagccaggaagagaaataaacccagggccgcgttgcgGCCCTTCGCGGGC‑‑AC‑GCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTgg > 2:41107‑M1/83‑149 (MQ=255) cttcttCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGC‑‑AC‑GCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTgg < 2:197451/149‑1 (MQ=255) cttcGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGC‑‑AC‑GCCCGCTCCCACAGGTTTAGCGCTg < 4:82698/119‑1 (MQ=255) cttcGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGC‑‑AC‑GCCCGCTCCCACAGGTTTAGCGCTg > 3:82698/1‑119 (MQ=255) cttcGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGC‑‑AC‑GCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTggg < 8:282503/147‑1 (MQ=255) gACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGC‑‑AC‑GCCCCCTCCCACCGGTTTAGCCCTGGCTTTGGAGACAGCGTAATTGCTGTGGGAGCggg > 2:260535/1‑149 (MQ=255) ccgctgtgggtctgcggccgccaccggcgccggctgccagccaggaacataaataaccccagggccgcgttgctGCCCTTCGCGTGC‑‑AC‑GCCCTCTCCCACAGGAATTACGCTGGCTTTGGAGCCTGCGTAATTCCTGTGTGAGCGGGc > 4:183164‑M1/75‑149 (MQ=255) gcgcAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGC‑‑AC‑GCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCgg > 1:216350/1‑140 (MQ=255) gcgcAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGC‑‑AC‑GCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCgg < 2:216350/140‑1 (MQ=255) gggctgcggccgccaccggcgccggctgccagccaggaagagaaataaacccagggccgcgttgcaGCCCTTCGCGGGCCTACCGCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGc > 1:94858‑M1/67‑148 (MQ=255) tGACCGGACCAAGTTCGACCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGC‑‑AC‑GCCCGCTCCCACAGGTTTCGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAgg < 1:61862/149‑1 (MQ=255) ttCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGC‑‑AC‑GCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCt < 5:161254/149‑1 (MQ=255) ccTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGC‑‑AC‑GCCCGCTCCCACAGGTTTa < 3:120125/77‑1 (MQ=255) ccTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGC‑‑AC‑GCCCGCTCCCACAGGTTTa > 4:120125/1‑77 (MQ=255) cTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGC‑‑AC‑GCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTggg > 5:99656/1‑149 (MQ=255) tCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGC‑‑AC‑GCCCCCACCCCCAGGGTTAGCGCGGGGTTTGGAGCCGGCGGTATTACTGTGGGGGCGGGCGTGGCCGCGAAGGGCCGCAACGCGGCCCTgggg > 4:218457/1‑148 (MQ=255) aGCCTGACCCGGCTTTGATGCTGTTTGGGCGGCGCGGCAGCCCTGCGCGGGC‑‑AC‑GCCCGCTCCCACAGGTTTAGCGCGGGCTTTGGAGCCTGCTTAATTCCTGTGGGAGCGGGCGTGCCCACGAAGGGCCGCAACGCGGCCCTGGGt < 4:29484/147‑1 (MQ=38) aTCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGC‑‑AC‑GCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTtc > 2:76167/1‑148 (MQ=255) tGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGC‑‑AC‑GCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCtt > 7:89075/1‑148 (MQ=255) aagagaaataaacccagggccgcgttgcgGCCCTTCGCGGGC‑‑AC‑Gc < 3:234755‑M1/17‑1 (MQ=255) aagagaaataaacccagggccgcgttgcgGCCCTTCGCGGGC‑‑AC‑Gc > 4:234755‑M1/30‑46 (MQ=255) aaataaacccagggccgcgttgcgGCCCTTCGCGGGC‑‑AC‑GCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCt > 4:14959‑M1/25‑76 (MQ=255) aaataaacccagggccgcgttgcgGCCCTTCGCGGGC‑‑AC‑GCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCt < 3:14959‑M1/52‑1 (MQ=255) aTGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGC‑‑AC‑GCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCctggctg > 2:65234/1‑149 (MQ=255) tttGGGCTGCGCGGCAGCCCTTCGCGGGC‑‑AC‑GCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGc < 8:89075/148‑1 (MQ=255) cTGCGCGGCCGCCCTCCGCGGCC‑‑CC‑GCCCGCTCCCACCGGTTTCGCGCTGGCTTGGCCGCCTGCGTAATCCCTGGGGGCGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGcc < 1:172950/149‑1 (MQ=255) | TACCGTGGCGAACCGGGTTATCTTCATGGACAAGGGCGAGATTGTGGAGCAGGCCGCGCCGGATGACTTCTTCGACCGGCCGCGCAGTGACCGGACCAAGTTGTTCCTCAGCCAGATCCTGCATTGATGCTGTTTGGGCTGCGCGGCAGCCCTTCGCGGGC‑‑AC‑GCCCGCTCCCACAGGTTTAGCGCTGGCTTTGGAGCCTGCGTAATTCCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCAACGCGGCCCTGGGTTTATTTCTCTTCCTGGCTGGCAGCCGGCGCC > NC_002947/1486858‑1487144 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |