| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1569744 = | 41 (0.830) | 8 (0.180) | 7/236 | NT | 17.4% | coding (555/1203 nt) | pcaF‑I | beta‑ketoadipyl‑CoA thiolase |
| ? | NC_002947 | 1569779 = | 38 (0.840) | coding (590/1203 nt) | pcaF‑I | beta‑ketoadipyl‑CoA thiolase | |||||
TCAGCGCCTCCAGCGTGGTTTCCGGGCGCAGGTGTTCGTCACGTTCGACGATGATTTCGCCCTTCTTGTGAGCGATACGCACCGGCACGATTTCTTCGGCAAAGAAGCCGGCAGCCTGCGCAGCGGCAGCCTTCTGCTGGCTGCGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1569892‑1569744‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgcgcaggCTGCCGGCTTCTTTGCCGAAGAAATCGTGCCGGTGCGTATCGCTCACAAGAAGGGCGAAATCATCGTCGAA‑CGTGACGAACACCTGCGCCCGGAAACCACGCTGGAGGCGCTGACCAAGCTCAAACCGGTCAACGGCCCG > NC_002947/1569779‑1569918 TCAGCGCCTCCAGCGTGGTTTCCGGGCGCAGGTGTTCGTCACGTTCGACGATGATTTCGCCCTTCTTGTGAGCGATACGCACCGGCACGATTTCTTCGGCAAAGAAGCCGGCAGCCTGCGCAGCGGCAGCCTTCTGCTGGCTGCGCAGG > 3:224864/1‑149TCAGCGCCTCCAGCGCGGTTTCCGGGCGCAGGTGTTCGTCACGTTCGACGATGATTTCGCCCTTCTTGTGAGCGATACGCACCGGCACGATTTCTTCGGCAAAGAAGCCGGCAGCCTGCGCAGCGGCAGCCTTCTGCTGGCTGCGCAGG < 6:148005/149‑1 TTTCTTCGGCAAAGAAGCCGGCAGCCTGCGCAGCGGCCGCCTTCTGCTGGCTGCGCAGGCTGCCGGCGTCTTTGCCGCAGAAATGGTGGCGGTGGGTATAGCTCACCAGAAGGGCGAAATCATCGTCGAA‑CGTGACGAACACCATCGCC > 4:95824/1‑149 CAGCCTGCGCAGCGGCAGCCTGCTGCTGGCTGCGCAGGCTGCCGGCTTCTTTGCCGAAGAAATCGTGCCGGTGCGTATCGCTCACAAGAAGGGCGAAATCATCGTCGAA‑CGTGACGAACACCTGCGCCCGGAAACCACGCTGGAGGCGC < 3:95824/149‑1 TGCGCAGCGGCAGCCTTCTGCTGGCTGCGCAGGCTGCCGGCTTCTTTGCCGAAGAAATCGTGCCGGTGCGTATCGCTCACAAGAAGGGCGAAATCATCGTCGAA‑CGTGACGAACACCTGCGCCCGGAAACCACGC > 3:171464/1‑135 TGCGCAGCGGCAGCCTTCTGCTGGCTGCGCAGGCTGCCGGCTTCTTTGCCGAAGAAATCGTGCCGGTGCGTATCGCTCACAAGAAGGGCGAAATCATCGTCGAA‑CGTGACGAACACCTGCGCCCGGAAACCACGC < 4:171464/135‑1 TGCGCAGCGGCAGCCTTCTGCTGGCTGCGCAGGCTGCCGGCTTCTTTGCCGAAGAAATCGTGCCGGTGCGTATCGCTCACAAGAAGGGCGAAA < 3:207595/93‑1 TGCGCAGCGGCAGCCTTCTGCTGGCTGCGCAGGCTGCCGGCTTCTTTGCCGAAGAAATCGTGCCGGTGCGTATCGCTCACAAGAAGGGCGAAA > 4:207595/1‑93 CGGCAGCCTTCTGCTGGCTGCGCAGGCTGCCGGCTTCTTTGCCGAAGAAATCGTGCCGGTGCGTATCGCTCACAAGAAGGGCGAAATCATCGTCGAACCGTGACGAACACCTGCGCCCGGAAACCACGCTGGAGGCGCTGAC < 1:220678/142‑1 CGGCAGCCTTCTGCTGGCTGCGCAGGCTGCCGGCTTCTTTGCCGAAGAAATCGTGCCGGTGCGTATCGCTCACAAGAAGGGCGAAATCATCGTCGAA‑CGTGACGAACACCTGCGCCCGGAAACCACGCTGGAGGCGCTGAC > 2:220678/1‑141 CTGCGCAGGCTGCCGGCTTCTTTGCCGAAGAAATCGTGCCGGTGCGTATCGCTCACAAGAAGGGCGAAATCATCGTCGAA‑CGTGACGAACACCTGCGCCCGGAAACCACGCTGGAGGCGCTGACCAAGCTCAAACCGGTCAACGGCCCG < 1:80999/149‑1 GCTGCCGGCTTCTTTGCCGAAGAAATCGTGCCGGTGCCTATCGCTCACAAGAAGGGCGAAATCATCGTCGAA‑CGTGACGAACACCTGCGCCCGGAAACCACGCTGGAGGCGCTGACCAAG < 5:187899/120‑1 GCTGCCGGCTTCTTTGCCGAAGAAATCGTGCCGGTGCCTATCGCTCACAAGAAGGGCGAAATCATCGTCGAA‑CGTGACGAACACCTGCGCCCGGAAACCACGCTGGAGGCGCTGACCAAG > 6:187899/1‑120 TCAGCGCCTCCAGCGTGGTTTCCGGGCGCAGGTGTTCGTCACGTTCGACGATGATTTCGCCCTTCTTGTGAGCGATACGCACCGGCACGATTTCTTCGGCAAAGAAGCCGGCAGCCTGCGCAGCGGCAGCCTTCTGCTGGCTGCGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1569892‑1569744‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgcgcaggCTGCCGGCTTCTTTGCCGAAGAAATCGTGCCGGTGCGTATCGCTCACAAGAAGGGCGAAATCATCGTCGAA‑CGTGACGAACACCTGCGCCCGGAAACCACGCTGGAGGCGCTGACCAAGCTCAAACCGGTCAACGGCCCG > NC_002947/1569779‑1569918 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |