New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1957618	49 (0.990)	5 (0.110)	5/236	NT	10.3%	intergenic (+46/+51)	PP_1754/fumC‑II	hypothetical protein/class 2 fumarate hydratase
	?	NC_002947	= 1957649	42 (0.920)					intergenic (+77/+20)	PP_1754/fumC‑II	hypothetical protein/class 2 fumarate hydratase

GAAACTCGCGCATTTGTGCAAAGACATCGGCCGACGCAAGGCGATTTTCATTACATGTGGGAAAGTCTGACCCATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1957462‑1957618 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgagccgcccAGGTTGCCTCATCACCTCGGCACCGCACCACGGGCGGCTCACAGTTTATCGGGTAGAGGTGCCTATCGCTCTGGCACTCAAGAAATCGGGTCATCCCCGGTACGAGGATAAGCATGGGTCAGACTTTCCCACATGTAATGAA  <  NC_002947/1957649‑1957508                                                                                                                                                                                                                                                                                                             GAAACTCGCGCATTTGTGCAAAGACATCGGCCGACGCAAGGCGATTTTCATTACATGTGGGAAAGTCTGACCCATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGT                                                                                                                                                         >  1:279597/1‑148  AAACTCGCGCATTTGTGCAAAGACATCGGCCGACGCAAGGCGATTTTCATTACATGTGGGAAAGTCTGACCCATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGA                                                                                                                                                       <  3:286860/149‑1                          ATCGGCCGACGCAAGGCGATTTTCATTACATGTGGGAAAGTCTGACCCATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCAGGTTGCCTCATCACCT                                                                                                                               >  4:261108/1‑149                                       AGGCGATTTTCATTACATGTGGGAAAGTCTGACCCATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCAGGTTGCCTCATCACCTCGGCACCGCACCA                                                                                                                  <  3:176060/149‑1                                         GCGATTTTCATTACATGTGGGAAAGTCTGACCCATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCAGGTTGCCTCATCACCTCGGCACCGCACCACG                                                                                                                >  4:126038/1‑149                                             TTTTCATTACATGTGGGAAAGTCTGACCCATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCAGGTTGCCTCATCACCTCGGCACCGCACCACGGGCG                                                                                                            <  3:126038/149‑1                                                      CATGTGGGAAAGTCTGACCCATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCAGGTTGCCTCATCACCTCGGCACCGCACCACGGGCGGCTCACAG                                                                                                    <  3:261108/148‑1                                                                                                                                                    TGAGCCGCCCAGGTTGCCTCATCACCTCGGCACCGCACCACGGGCGGCTCACAGTTTATCGGGTAGAGGTGCCTATCGCTCTGGCACTCAAGAAATCGGGTCATCCCCGGTACGAGGATAAGCATGGGTCAGACTTTCCCACATGTAAT     <  4:163411/149‑1                                                                                                                                                        CCGCCCAGGTTGCCTCATAACCTCGGCACCGCACCACGGGCGGCTCACAGTTTATCGGGTAGAGGTGCCTATCGCTCTGGCACTCAAGAAATCGGGTCATCCCCGGTACGAGGATAAGCATGGGTCATACTTTCCCACATGTAATGAA  >  4:74590/1‑148                                                                                                                                                                                                                                                                                                             GAAACTCGCGCATTTGTGCAAAGACATCGGCCGACGCAAGGCGATTTTCATTACATGTGGGAAAGTCTGACCCATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1957462‑1957618 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgagccgcccAGGTTGCCTCATCACCTCGGCACCGCACCACGGGCGGCTCACAGTTTATCGGGTAGAGGTGCCTATCGCTCTGGCACTCAAGAAATCGGGTCATCCCCGGTACGAGGATAAGCATGGGTCAGACTTTCCCACATGTAATGAA  <  NC_002947/1957649‑1957508

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.