New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1957618	49 (0.990)	5 (0.110)	5/236	NT	10.3%	intergenic (+46/+51)	PP_1754/fumC‑II	hypothetical protein/class 2 fumarate hydratase
	?	NC_002947	= 1957649	42 (0.920)					intergenic (+77/+20)	PP_1754/fumC‑II	hypothetical protein/class 2 fumarate hydratase

TTCATTACATGTGGGAAAGTCTGACCCATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTTCTCCGGCCG‑‑CACCCACTGGTCGAACTGTTCATTGGTCAGGTACTTCAACGCCAATGCCGCCTCGCGCAAGGTCGTGCCCTCGCTGTAAGCCTTCTTGG  >  NC_002947/1957508‑1957796                                                                                                                                              |                                                                                                                                                      ttCATTACATGTGGGAAAGTATGACCCATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTTATGAGGCAACCTgggcgg                                                                                                                                                 >  4:74590‑M2/1‑142 (MQ=255)    aTTACATGTGGGAAAGTCTGACCCATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTgggcggctca                                                                                                                                             <  4:163411‑M2/149‑11 (MQ=255)         aTGTGGGAAAGTCTGACCCATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATgggg                                                                                                                                        >  6:222476/1‑149 (MQ=255)               gAAAGTCTGACCCATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATgggg                                                                                                                                        >  4:152325/1‑143 (MQ=255)               gAAAGTCTGACCCATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATgggg                                                                                                                                        <  3:152325/143‑1 (MQ=255)                  aGTCTGACCCATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGc                                                                                                                               <  3:134772/149‑1 (MQ=255)                           cATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGcccc                                                                                                                      >  5:69502/1‑149 (MQ=255)                             tGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCa                                                                                                                    <  1:125766/149‑1 (MQ=255)                               cTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAgg                                                                                                                  >  4:113059/1‑149 (MQ=255)                                  aTCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGgcgc                                                                                                               >  8:16973/1‑149 (MQ=255)                                  aTCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGgcgc                                                                                                               >  6:58866/1‑149 (MQ=255)                                         tACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATg                                                                                                        <  3:163411/149‑1 (MQ=255)                                         tACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATg                                                                                                        <  3:177454/149‑1 (MQ=255)                                              gggATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTtctc                                                                                                   >  1:2901/1‑149 (MQ=255)                                              gggATGACCCGATTTCTTGAGTGCCAGAGCCATAGGCACCTCTACCCGATAACCTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTtctc                                                                                                   <  7:228151/149‑1 (MQ=255)                                                  tGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTTCTCCGGc                                                                                               <  5:58866/149‑1 (MQ=255)                                                  tGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTTCTCCGGc                                                                                               <  7:16973/149‑1 (MQ=255)                                                      ccGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGcc                                                                                                                              <  6:137749/114‑1 (MQ=255)                                                      ccGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGcc                                                                                                                              >  5:137749/1‑114 (MQ=255)                                                       cGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTTCTCCGGCCG‑‑CAc                                                                                        >  4:80359/1‑149 (MQ=255)                                                              ttGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTTCTCCGGCCG‑‑CACCCACTgg                                                                                 >  3:45346/1‑149 (MQ=255)                                                              ttGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTTCTCCGGCCG‑‑CACCCACTgg                                                                                 >  5:39389/1‑149 (MQ=255)                                                                gAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCttt                                                                                                                           >  4:268119/1‑107 (MQ=255)                                                                gAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCttt                                                                                                                           <  3:268119/107‑1 (MQ=255)                                                                     ccAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTTCTCCGGCCG‑‑CACCCACTGGTCGAACt                                                                          <  6:39389/149‑1 (MQ=255)                                                                       agagCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTTCTCCGGCCG‑‑CACCCACTGGTCGaa                                                                            <  8:183585/145‑1 (MQ=255)                                                                       agagCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTTCTCCGGCCG‑‑CACCCACTGGTCGaa                                                                            >  7:183585/1‑145 (MQ=255)                                                                            gATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTTCTCCGGCCG‑‑CACCCACTGGTCGAACTGTTCAtt                                                                   <  3:113059/149‑1 (MQ=255)                                                                                     ctctACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTTCTCCGGCCG‑‑CACCCACTGGTCGAACTGTTCATTGGTCAg                                                             >  8:257203/1‑146 (MQ=255)                                                                                     ctctACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTTCTCCGGCCG‑‑CACCCACTGGTCGAACTGTTCATTGGTCAg                                                             <  7:257203/146‑1 (MQ=255)                                                                                          cccGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCAt                                                                                                         >  8:299628/1‑99 (MQ=255)                                                                                          cccGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCAt                                                                                                         <  7:299628/99‑1 (MQ=255)                                                                                          cccGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTTCTCCGGCCG‑‑CACCCACTGGTCGAACTGTTCATTGGTCAGGTACtt                                                       <  2:2901/147‑1 (MQ=255)                                                                                              aTAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTTCTCCGGCCG‑‑CACCCACTGGTCGAACTGTTCATTGTTCAGGTACTTCAACGc                                                 <  4:108789/149‑1 (MQ=255)                                                                                                  aCTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTTCTCCGGCCG‑‑CACCCACTGGTCGAACTGTTCATTGGTCAGGTACTTCAACGCCAAt                                             >  5:250198/1‑149 (MQ=255)                                                                                                  aCTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTTCTCCGGCCG‑‑CACCCACTGGTCGAACTGTTCATTGGTCAGGTACTTCAACGCCAAt                                             >  2:94504/1‑149 (MQ=255)                                                                                                   cTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTgggcggctcacagtttatcgggtagaggtgcctatcgctctggcactcaagaaatcgggtcatccccggtacgaggataagcatgggtcagactttcccacatg                                               <  3:261108‑M2/148‑105 (MQ=255)                                                                                                      tgAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCAT‑GGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTTCTCCGGCCG‑‑CACCCACTGGTCGAACTGTTCATTGGTCAGGTACTTCAACGCCAATgccgc                                        >  6:43376/1‑149 (MQ=255)                                                                                                           cgccCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTgggcggctcacagtttatcgggtagaggtgcctatcgctctggcactcaagaaatcgggtcatccccggtacgaggataagcatgggtcagactttcccacatgtaatgaaaa                                      <  3:126038‑M2/149‑114 (MQ=255)                                                                                                               cGTGGTGCGGTGCCGAGGTGATGAGGCAACCTgggcggctcacagtttatcgggtagaggtgcctatcgctctggcactcaagaaatcgggtcatccccggtacgaggataagcatgggtcagactttcccacatgtaatgaaaatcgc                                  >  4:126038‑M2/1‑32 (MQ=255)                                                                                                                 tggtgCGGTGCCGAGGTGATGAGGCAACCTgggcggctcacagtttatcgggtagaggtgcctatcgctctggcactcaagaaatcgggtcatccccggtacgaggataagcatgggtcagactttcccacatgtaatgaaaatcgcct                                <  3:176060‑M2/149‑120 (MQ=255)                                                                                                                 tggtgCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGTGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTTCTCCGGCCG‑‑CACCCACTGGTCGAACTGTTCATTGGTCAGGTACTTCAACGCCAATGCCGCCTCGCGCAAg                              <  6:69502/149‑1 (MQ=255)                                                                                                                      cggtgcCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGc                                                                                                           >  7:206887/1‑69 (MQ=255)                                                                                                                      cggtgcCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGc                                                                                                           <  8:206887/69‑1 (MQ=255)                                                                                                                      cggtgcCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTTCTCCGGCCG‑‑CACCCACTGGTCGAACTGTTCATTGGTCAGGTACTTCAACGCCAATGCCGCCTCGCGCAAGGTCGt                         >  6:68297/1‑149 (MQ=255)                                                                                                                       ggtgcCGATGTTATGATGCAAACTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTTCTCCGGCCGCTCTCCCACTGGTCGAACTGTTCATTGGTCAGGTACTTCAACGCCAATGCCGCCTCGCGCAAGGTCg                          <  1:94504/149‑1 (MQ=255)                                                                                                                        gtgcCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTTCTCCGGCCG‑‑CACCCACTGGTCGAACTGTTCATTGGTCAGGTACTTCAACGCCAATGCCGCCTCGCGCAAGGTCGTGc                       <  5:222476/149‑1 (MQ=255)                                                                                                                              aGGTGATGAGGCAACCTgggcggctcacagtttatcgggtagaggtgcctatcgctctggcactcaagaaatcgggtcatccccggtacgaggataagcatgggtcagactttcccacatgtaatgaaaatcgccttgcgtcggccgat                   >  4:261108‑M2/1‑17 (MQ=255)                                                                                                                                   atgaGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTTCTCCGGCCG‑‑CACCCACTGGTCGAACTGTTCATTGGTCAGGTACTTCAACGCCAATGCCGCCTCGCGCAAGGTCGTGCCCTCGCTGTaa            <  3:80359/149‑1 (MQ=255)                                                                                                                                       ggCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTTCTCCGGCCG‑‑CACCCACTGGTCGAACTGTTCATTGGTCAGGTACTTCAACGCCAATGCCGCCTCGCGCAAGGTCGTGCCCTCGCt                <  7:196403/141‑1 (MQ=255)                                                                                                                                       ggCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTTCTCCGGCCG‑‑CACCCACTGGTCGAACTGTTCATTGGTCAGGTACTTCAACGCCAATGCCGCCTCGCGCAAGGTCGTGCCCTCGCt                >  8:196403/1‑141 (MQ=255)                                                                                                                                       ggCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTTCTCCGGCCG‑‑CACCCACTGGTCGAACTGTTCATTGGTCAGGTACTTCAACGCCAATGCCGCCTCGCGCAAGGTCGTGCCCTCGCTGTAAGCct        >  5:55373/1‑149 (MQ=255)                                                                                                                                             cTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTTCTCCGGCCG‑‑CACCCACTGGTCGAACTGTTCATTGGTCAGGTACTTCAACGCCAATGCCGCCTCGCGCAAGGTCGTGCCCTCGCTGTAAGCCTTCTTgg  <  4:45346/149‑1 (MQ=255)                                                                                                                                              |                                                                                                                                                      TTCATTACATGTGGGAAAGTCTGACCCATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTTCTCCGGCCG‑‑CACCCACTGGTCGAACTGTTCATTGGTCAGGTACTTCAACGCCAATGCCGCCTCGCGCAAGGTCGTGCCCTCGCTGTAAGCCTTCTTGG  >  NC_002947/1957508‑1957796

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.