New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2085883	9 (0.180)	8 (0.170)	6/250	NT	47.7%	intergenic (+592/‑3)	PP_1864/PP_1865	hypothetical protein/transposase
	?	NC_002947	= 2413187	NA (NA)					coding (31/1302 nt)	PP_2114	transposase

TCACCTTTCCGCCCTTACGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2085756‑2085883 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGGTGCTTTTTTCTCGAATCGCGCTAGTACATCAGCCCACATCGCTCGGGTCTTCCTGACTGGATTTCAGCGAATTCTACCGAAGACCTTGAAAGGGATGGCCCTTAC  <  NC_002947/2413187‑2413040                                                                                                                                                                                                                                                                                      TCACCTTTCCGCCCTTACGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGCAATGGCCTGCTCCAAGGC                                                                                                                                   >  3:200578/1‑147              CTTACGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGTAATGGCCTGCTCCAAGGCAAGTTTGGCCATTAC                                                                                                                    <  5:272650/149‑1                 agGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGTAATGGCCTGCTCCAAGGCAAGTTTGGCCATTATGC                                                                                                                  <  7:75548/146‑1                 agGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGC                                                                                                                  <  6:66936/146‑1                 ACGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACG                                                                                                                   <  3:127419/147‑1                  CGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTG                                                                                                                <  4:200578/149‑1                     CCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCG                                                                                                             >  5:14254/1‑149                      CATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGG                                                                                                            <  6:14254/149‑1                                           TAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGC                                                                                                                                                       >  5:308236/1‑85                                           TAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGC                                                                                                                                                       <  6:308236/85‑1                                                                                                                              GCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGGTGCTTTTTTCTCGACTCGCGCTAGTACATCAGCCCACATCGCTCGGGTCTTCCTGACTGGATTTCAGCGAATTCTACCGAAGACCTTGAAAGGGATGGCCCTT    <  6:259047/149‑1                                                                                                                              GCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGGTGCTTTTTTCTCGAATCGCGCTAGTACATCAGCCCACATCGCTCGGGTCTTCCTGACTGGATTTCAGCGAATTCTACCGAAGACCTTGAAAGGGATGGCCCTT    <  8:57102/149‑1                                                                                                                               CGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGGTGCTTTTTTCTCGAATCGCGCTAGTACATCAGCCCACATCGCTCGGGTCTTCCTGACTGGATTTCAGCGAATTCTACCGAAGACCTTGAAAGGGATGGCCCTTA   <  7:271125/149‑1                                                                                                                                GCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGGTGCTTTTTTCTCGAATCGCGCTAGTACATCAGCCCACATCGCTCGGGTCTTCCTGACTGGATTTCAGCGAATTCTACCGAAGACCTTGAAAGGGATGGCCCTTAC  >  7:240986/1‑149                                                                                                                                                                                                                                                                                      TCACCTTTCCGCCCTTACGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2085756‑2085883 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGGTGCTTTTTTCTCGAATCGCGCTAGTACATCAGCCCACATCGCTCGGGTCTTCCTGACTGGATTTCAGCGAATTCTACCGAAGACCTTGAAAGGGATGGCCCTTAC  <  NC_002947/2413187‑2413040

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.