New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2085883	9 (0.180)	8 (0.170)	6/250	NT	47.7%	intergenic (+592/‑3)	PP_1864/PP_1865	hypothetical protein/transposase
	?	NC_002947	= 2413187	NA (NA)					coding (31/1302 nt)	PP_2114	transposase

GATGACGACGCCAACTCACCTTTCCGCCCTTACGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTGCGCCGGAGTGGGTCGATCAGGTTTTCGAGGAGCACCGCCAACGGCAGTATTCTCGCGAGCTGCTGTTCTCGACCATTATCAAGTTGATGTCGCTTGTTTCATTGGGCTTGAAGCC  >  NC_002947/2085741‑2086031                                                                                                                                               |                                                                                                                                                     gATGACGACGCCAACTCACCTTTCCGCCCTTACGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGTAATgg                                                                                                                                                >  7:155559/1‑149 (MQ=255)  aTGACGACGCCAACTCACCTTTCCGCCCTTACGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGTAATGGc                                                                                                                                               >  1:118105/1‑149 (MQ=255)        acgCCAACTCACCTTTCCGCCCTTACGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCAGCCAGCGTAATGGCCAAACt                                                                                                                                         >  2:29088/1‑149 (MQ=37)               cTCACCTTTCCGCCCTTACGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTg                                                                                                                                  <  4:212232/149‑1 (MQ=32)                tCACCTTTCCGCCCTTACGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGcaatggcctgctccaaggc                                                                                                                                   >  3:200578‑M1/1‑128 (MQ=255)                tCACCTTTCCGCCCTTACGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTg                                                                                                                                  >  2:110960/1‑148 (MQ=32)                  aCCTTTCCGCCCTTACGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGa                                                                                                                                <  2:174467/148‑1 (MQ=32)                    cTTTCCGCCCTTACGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAg                                                                                                                               >  2:259802/1‑147 (MQ=32)                       tCCGCCCTTACGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCTGCGTAATGGCCAAACTTGCCTTGGAGCAgg                                                                                                                           <  1:29088/148‑1 (MQ=14)                       tCCGCCCTTACGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAg                                                                                                                            <  7:8814/147‑1 (MQ=31)                             cTTACGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGtaatggcctgctccaaggcaagtttggccattac                                                                                                                    <  5:272650‑M1/149‑35 (MQ=255)                                agggccATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGtaatggcctgctccaaggcaagtttggccattatgc                                                                                                                  <  7:75548‑M1/146‑37 (MQ=255)                                agggccATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGcaatggcctgctccaaggcaagtttggccattacgc                                                                                                                  <  6:66936‑M1/146‑37 (MQ=255)                                aCGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGcaatggcctgctccaaggcaagtttggccattacg                                                                                                                   <  3:127419‑M1/147‑36 (MQ=255)                                 cGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGcaatggcctgctccaaggcaagtttggccattacgctg                                                                                                                <  4:200578‑M1/149‑39 (MQ=255)                                    ccATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGcaatggcctgctccaaggcaagtttggccattacgctggcg                                                                                                             >  5:14254‑M1/1‑108 (MQ=255)                                     cATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGcaatggcctgctccaaggcaagtttggccattacgctggcgg                                                                                                            <  6:14254‑M1/149‑43 (MQ=255)                                                                                                                                             gcgcaatggcctgctccaaggcaagtttggccattacgctggcgggtgcttttttctcgactcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccgaagaccttgaaagggatggccctt    <  6:259047‑M1/149‑147 (MQ=255)                                                                                                                                             gcgcaatggcctgctccaaggcaagtttggccattacgctggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccgaagaccttgaaagggatggccctt    <  8:57102‑M1/149‑147 (MQ=255)                                                                                                                                              cgcaatggcctgctccaaggcaagtttggccattacgctggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccgaagaccttgaaagggatggccctta   <  7:271125‑M1/149‑148 (MQ=255)                                                                                                                                               gcaatggcctgctccaaggcaagtttggccattacgctggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccgaagaccttgaaagggatggcccttac  >  7:240986‑M1/1‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                     GATGACGACGCCAACTCACCTTTCCGCCCTTACGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTGCGCCGGAGTGGGTCGATCAGGTTTTCGAGGAGCACCGCCAACGGCAGTATTCTCGCGAGCTGCTGTTCTCGACCATTATCAAGTTGATGTCGCTTGTTTCATTGGGCTTGAAGCC  >  NC_002947/2085741‑2086031

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.