New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2982538	42 (0.850)	3 (0.060)	3/250	NT	6.5%	coding (641/810 nt)	PP_2608	shikimate dehydrogenase family protein
	?	NC_002947	= 2982579	45 (0.930)					coding (600/810 nt)	PP_2608	shikimate dehydrogenase family protein

CATTTCCGGGCCAGTCTGGATCCTGCAACCTACTTGCCGCGCGCGGTTCAGCAGCGGGGTGATCTCGGGTGAGGTGACCACGTCGGCGACCAGGGTGTCTGGCTGCAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2982429‑2982538 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggCACCCGCGCAGAGCTGCCGTTGTCCGCCGCCCTGCTGGCTACCCTGCA  <  NC_002947/2982579‑2982532                                                                                                                                                                CATTTCCGGGCCAGTCTGGATCCTGCAACCTACTTGCCGCGCGCGGTTCAGCAGCGGGGTGATCTCGGGTGAGGTGACCACGTCGGCGACCAGGGTGTCTGGCTGCAGGGCACCCGCGCAGAGCTGCCGTTGTCCGCCGCCCTGCTGGC           >  2:83420/1‑149       CGGGCCAGTCTGGATCCTGCAACCTACTTGCCGCGCGCGGTTCAGCAGCGGGGTGATCTCGGGTGAGGTGACCACGTCGGCGACCAGGGTGTCTGGCTGCAGGGCACCCGCGCAGAGCTGCCGTTGTCCGCCGCCCTGCTGGCTACCCT     <  5:151655/149‑1          GCCAGTCTGGATCCTGCAACCTACTTGCCGCGCGCGGTTCAGCAGCGGGGTGATCTCGGGTGAGGTGACCACGTCGGCGACCAGGGTGTCTGGCTGCAGGGCACCCGCGCAGAGCTGCCGTTGTCCGCCGCCCTGCTGGCTACCCTGCA  <  1:83420/149‑1                                                                                                                                                                CATTTCCGGGCCAGTCTGGATCCTGCAACCTACTTGCCGCGCGCGGTTCAGCAGCGGGGTGATCTCGGGTGAGGTGACCACGTCGGCGACCAGGGTGTCTGGCTGCAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2982429‑2982538 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggCACCCGCGCAGAGCTGCCGTTGTCCGCCGCCCTGCTGGCTACCCTGCA  <  NC_002947/2982579‑2982532

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.