New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2982538	42 (0.850)	3 (0.060)	3/250	NT	6.5%	coding (641/810 nt)	PP_2608	shikimate dehydrogenase family protein
	?	NC_002947	= 2982579	45 (0.930)					coding (600/810 nt)	PP_2608	shikimate dehydrogenase family protein

ATGAAGGCGCCAAGGTGGCCCAGTTGGGCGAAGGCCATTTCCGGGCCAGTCTGGATCCTGCAACCTACTTGCCGCGCGCGGTTCAGCAGCGGGGTGATCTCGGGTGAGGTGACCACGTCGGCGACCAGGGTGTCTGGCTGCAGGGTAGCCAGCAGGGCGGCGGACAACGGCAGCTCTGCGCGGGTGCCCATGCCGACTGGGGACGCGTTGGCCACCAGGTCGAAGTCTTCCAGCCCACTGAACTGTGTGCTGACCGTAAGCCCGGGGAAGCCGTTGCCGAGCAGTTCGCA  >  NC_002947/2982394‑2982683                                                                                                                                                 |                                                                                                                                                  aTGAAGGCGCCAAGGTGGCCCAGTTGGGCGAAGGCCATTTCCGGGCCAGTCTGGATCCTGCAACCTACTTGCCGCGCGCGGTTCAGCAGCGGGGTGATCTCGGGTGAGGTGACCACGTCGGCGACCAGGGTGTCTGGCTGCAGGGTAGc                                                                                                                                               >  7:161077/1‑149 (MQ=255)     aGGCGCCAAGGTGGCCCAGTTGGGCGAAGGCCATTTCCGGGCCAGTCTGGATCCTGCAACCTACTTGCCGCGCGCGGTTCAGCAGCGGGGTGATCTCGGGTGAGGTGACCACGTCGGCGACCAGGGTGTCTGGCTGCAGGGTAGCcagc                                                                                                                                           <  8:161077/149‑1 (MQ=255)       gcgcCAAGGTGGCCCAGTTGGGCGAAGGCCATTTCCGGGCCAGTCTGGATCCTCCAACCTACTTGCCGCGCGCGGTTCAGCAGCGGGGTGATCTCGGGTGAGGTGACCACGTCGGCGACCAGGGTGTCTGGCTGCAGGGTAGCcagcag                                                                                                                                         <  1:259426/149‑1 (MQ=255)                            gCGAAGGCCATTTCCGGGCCAGTCTGGATCCTGCAACCTACTTGCCGCGCGCGGTTCAGCAGCGGGGTGATCTCGGGTGAGGTGACCACGTCGGCGACCAGGGTGTCTGGCTGCAGGGTAGCcagca                                                                                                                                          <  7:56238/127‑1 (MQ=255)                            gCGAAGGCCATTTCCGGGCCAGTCTGGATCCTGCAACCTACTTGCCGCGCGCGGTTCAGCAGCGGGGTGATCTCGGGTGAGGTGACCACGTCGGCGACCAGGGTGTCTGGCTGCAGGGTAGCcagca                                                                                                                                          >  8:56238/1‑127 (MQ=255)                               aaGGCCATTTCCGGGCCAGTCTGGATCCTGCAACCTACTTGCCGCGCGCGGTTCAGCAGCGGGGTGATCTCGGGTGAGGTGACCACGTCGGCGACCAGGGTGTCTGGCTGCAGGGTAGCCAGCAGGGCGGCGGACAACGGCAGCTCTgc                                                                                                                 <  2:173312/149‑1 (MQ=255)                                    cATTTCCGGGCCAGTCTGGATCCTGCAACCTACTTGCCGCGCGCGGTTCAGCAGCGGGGTGATCTCGGGTGAGGTGACCACGTCGGCGACCAGGGTGTCTGGCTGCAGGGcacccgcgcagagctgccgttgtccgccgccctgctggc                                                                                                            >  2:83420‑M1/1‑110 (MQ=255)                                    cATTTCCGGGCCAGTCTGGATCCTGCAACCTACTTGCCGCGCGCGGTTCAGCAGCGGGGTGATCTCGGGTGAGGTGACCACGTCGGCGACCAGGGTGTCTGGCTGCAGGGTAGCCAGCAGGGCGGCGGACAACGGCAGCTCTGCGCggg                                                                                                            >  3:170599/1‑149 (MQ=255)                                     aTTTCCGGGCCAGTCTGGATCCTGCAACCTACTTGCCGCGCGCGGTTCAGCAGCGGGGTGATCTCGGGTGAGGTGACCACGTCGGCGACCAGGGTGTCTGGCTGCAGGGTAGCCAGCAGGGCGGCGGACAACGGCAGCTCTGCGCGGGt                                                                                                           >  5:302546/1‑149 (MQ=255)                                          cGGGCCAGTCTGGATCCTGCAACCTACTTGCCGCGCGCGGTTCAGCAGCGGGGTGATCTCGGGTGAGGTGACCACGTCGGCGACCAGGGTGTCTGGCTGCAGGGcacccgcgcagagctgccgttgtccgccgccctgctggctaccct                                                                                                      <  5:151655‑M1/149‑46 (MQ=255)                                            ggCCAGTCTGGATCCTGCAACCTACTTGCCGCGCGCGGTTCAGCAGCGGGGTGATCTCGGGTGAGGTGACCACGTCGGCGACCAGGGTGTCTGGCTGCAGGGTAGCCAGCAGGGCGGCGGACAACGGCAGCTCTGCGCGGGTGCCCATg                                                                                                    >  1:273648/1‑149 (MQ=255)                                             gCCAGTCTGGATCCTGCAACCTACTTGCCGCGCGCGGTTCAGCAGCGGGGTGATCTCGGGTGAGGTGACCACGTCGGCGACCAGGGTGTCTGGCTGCAGGGcacccgcgcagagctgccgttgtccgccgccctgctggctaccctgca                                                                                                   <  1:83420‑M1/149‑49 (MQ=255)                                             gCCAGTCTGGATCCTGCAACCTACTTGCCGCGCGCGGTTCAGCAGCGGGGTGATCTCGGGTGAGGTGACCACGTCGGCGACCAGGGTGTCTGGCTGCAGGGTAGCCAGCAGGGCGGCGGACAACGGCAGCTCTGCGCGGGTGCCCATGc                                                                                                   >  5:197509/1‑149 (MQ=255)                                                aGTCTGGATCCTGCAACCTACTTGCCGCGCGCGGTTCAGCAGCGGGGTGATCTCGGGTGAGGTGACCACGTCGGCGACCAGGGTGTCTGGCTGCAGGGTAGCCAGCAGGGCGGCGGACAACGGCAGCTCTGCGCGGGTGCCCATGCCGa                                                                                                <  4:170599/149‑1 (MQ=255)                                                 gTCTGGATCCTGCAACCTACTTGCCGCGCGCGGTTCAGCAGCGGGGTGATCTCGGGTGAGGTGACCACGTCGGCGACCAGGGTGTCTGGCTGCAGGGTAGCCAGCAGGGCGGCGGACAACGGCAGCTCTGCGCGGGTGCCCATGCCGAc                                                                                               >  7:64472/1‑149 (MQ=255)                                                     ggATCCTGCAACCTACTTGCCGCGCGCGGTTCAGCAGCGGGGTGATCTCGGGTGAGGTGACCACGTCGGCGACCAGGGTGTCTGGCTGCAGGGTAGCCAGCAGGGCGGCGGACAACGGCAGCTCTGCGCGGGTGCCCATGCCGACTggg                                                                                           >  8:185065/1‑149 (MQ=255)                                                        tCCTGCAACCTACTTGCCGCGCGCGGTTCAGCAGCGGGGTGATCTCGGGTGAGGTGACCACGTCGGCGACCAGGGTGTCTGGCTGCAGGGTAGCCAGCAGGGCGGCGGACAACGGCAGCTCTGCGCGGGTGCCCATGCCGACTGGGGAc                                                                                        <  8:32590/149‑1 (MQ=255)                                                        tCCTGCAACCTACTTGCCGCGCGCGGTTCAGCAGCGGGGTGATCTCGGGTGAGGTGACCACGTCGGCGACCAGGGTGTCTGGCTGCAGGGTAGCCAGCAGGGCGGCGGACAACGGCAGCTCTGCGCGGGTGCCCATGCCGACTGGGGAc                                                                                        <  3:50544/149‑1 (MQ=255)                                                          cTGCAACCTACTTGCCGCGCGCGGTTCAGCAGCGGGGTGATCTCGGGTGAGGTGACCACGTCGGCGACCAGGGTGTCTGGCTGCAGCGTAGCCAGCAGGGCGGCGGCCAACGGCAGCTCTGCGCGGGTGCCCATGCCGACTGCGGAcgc                                                                                      >  3:226746/1‑149 (MQ=255)                                                           tGCAACCTACTTGCCGCGCGCGGTTCAGCAGCGGGGTGATCTCGGGTGAGGTGACCACGTCGGCGACCAGGGTGTCTGGCTGCAGGGTAGCCAGCAGGGCGGCGGACAACGGCAGCTCTGCGCGGGTGCCCATGCCGACTGGGGAcgcg                                                                                     >  7:8746/1‑149 (MQ=255)                                                                ccTACTTGCCGCGCGCGGTTCAGCAGCGGGGTGATCTCGGGTGAGGTGACCACGTCGGCGACCAGGGTGTCTGGCTGCAGGGTAGCCAGCAGGGCGGCGGACAACGGCAGCTCTGCGCgg                                                                                                             >  5:249098/1‑120 (MQ=255)                                                                ccTACTTGCCGCGCGCGGTTCAGCAGCGGGGTGATCTCGGGTGAGGTGACCACGTCGGCGACCAGGGTGTCTGGCTGCAGGGTAGCCAGCAGGGCGGCGGACAACGGCAGCTCTGCGCgg                                                                                                             <  6:249098/120‑1 (MQ=255)                                                                            gcgcgGTTCAGCAGCGGGGTGATCTCGGGTGAGGTGACCACGTCGGCGACCAGGGTGTCTGGCTGCAGGGTAGCCAGCAGGGCGGCGGACAACGGCAGCTCTGCGCGGGTGCCCATGCCGACTGGGGACGCGTTGGCCACCAGGTCGaa                                                                    <  8:64472/149‑1 (MQ=255)                                                                                              gTGATCTCGGGTGAGGTGACCACGTCGGCGACCAGGGTGTCTGGCTGCAGGGTAGCCAGCAGGGCGGCGGACAACGGCAGCTCTGCGCGGGTGCCCATGCCGACTGGGGACGCGTTGGCCACCAGGTCGAAGTCTTCCAGCCCACTGaa                                                  <  6:108382/149‑1 (MQ=255)                                                                                                  tgtcGGGTGAGGTGACCACGTCGGCGACCAGGGTTTCTGGGTGCAGTGTAGCCTGCAGGGCGGCTGAGAACGGCAGCTCTGCGCGGGTGCCCATGCGGACTGGGGACGCGTTGGCCACCAGGTCGAAGTCTTCCAGCCGACTGAACtgt                                              <  4:226746/147‑1 (MQ=255)                                                                                                      gggTGAGGTGACCACGTCGGCGACCAGGGTGTCTGGCTGCAGGGTAGCCAGCAGGGCGGCGGACAACGGCAGCTCTGCGCGGGTGCCCATGCCGACTGGGGACGCGTTGGCCACCAGGTCGAAGTCTTCCAGCCCACTGAACtgtgt                                            <  8:8746/147‑1 (MQ=255)                                                                                                        gtgaggtgaCCACGTCGGCGACCAGGGTGTCTGGCTGCAGGGTAGCCAGCAGGGCGGCGGACAACGGCAGCTCTGCGCGGGTGCCCATGCCGACTGGGGACGCGTTGGc                                                                                <  4:251846/109‑1 (MQ=255)                                                                                                        gtgaggtgaCCACGTCGGCGACCAGGGTGTCTGGCTGCAGGGTAGCCAGCAGGGCGGCGGACAACGGCAGCTCTGCGCGGGTGCCCATGCCGACTGGGGACGCGTTGGc                                                                                >  3:251846/1‑109 (MQ=255)                                                                                                        gtgaggtgaCCACGTCGGCGACCAGGGTGTCTGGCTGCAGGGTAGCCAGCAGGGCGGCGGACAACGGCAGCTCTGCGCGGGTGCCCATGCCGACTGGGGACGCGTTGGCCACCAGGTCGAAGTCTTCCAGCCCACTGAACtgtgtg                                           <  6:73286/146‑1 (MQ=255)                                                                                                        gtgaggtgaCCACGTCGGCGACCAGGGTGTCTGGCTGCAGGGTAGCCAGCAGGGCGGCGGACAACGGCAGCTCTGCGCGGGTGCCCATGCCGACTGGGGACGCGTTGGCCACCAGGTCGAAGTCTTCCAGCCCACTGAACtgtgtg                                           >  5:73286/1‑146 (MQ=255)                                                                                                            ggtgaCCACGTCGGCGACCAGGGTGTCTGGCTGCAGGGTAGCCAGCAGGGCGGCGGACAACGGCAGCTCTGCGCGGGTGCCCATGCCGACTGGGGACGCGTTGGCCACCAGGTCGAAGTCTTCCAGCCCACTGAACtgtgtg                                           <  2:122844/142‑1 (MQ=255)                                                                                                            ggtgaCCACGTCGGCGACCAGGGTGTCTGGCTGCAGGGTAGCCAGCAGGGCGGCGGACAACGGCAGCTCTGCGCGGGTGCCCATGCCGACTGGGGACGCGTTGGCCACCAGGTCGAAGTCTTCCAGCCCACTGAACtgtgtg                                           >  1:122844/1‑142 (MQ=255)                                                                                                             gtgaCCACGTCGGCGACCAGGGTGTCTGGCTGCAGGGTAGCCAGCAGGGCGGCGGACAACGGCAGCTCTGCGCGGGTGCCCATGCCGACTGGGGACGCGTTGGCCACCAGGTCGAAGTCTTCCAGCCCACTGAACTGTGTGCTGACCg                                    >  5:49699/1‑148 (MQ=255)                                                                                                              tgaCCACGTCGGCGACCAGGGTGTCTGGCTGCAGGGTAGCCAGCAGGGCGGCGGACAACGGCAGCTCTGCGCGGGTGCCCATGCCGACTGGGGACGCGTTGGCCACCAGGTCGAAGTCTTCCAGCCCACTGAACTGTGTGCTGACCGt                                   >  5:313618/1‑148 (MQ=255)                                                                                                                aCCACGTCGGCGACCAGGGTGTCTGGCTGCAGGGTAGCCAGCAGGGCGGCGGACAACGGCAGCTCTGCGCGGGTGCCCATGCCGACTGGGGACGCGTTGGCCACCAGGTCGAAGTCTTCCAGCCCACTGAACTGTGTGCTGACCGTaa                                 <  5:324664/148‑1 (MQ=255)                                                                                                                aCCACGTCGGCGACCAGGGTGTCTGGCTGCAGGGTAGCCAGCAGGGCGGCGGACAACGGCAGCTCTGCGCGGGTGCCCATGCCGACTGGGGACGCGTTGGCCACCAGGTCGAAGTCTTCCAGCCCACTGAACTGTGTGCTGACCGTaa                                 <  6:302546/148‑1 (MQ=255)                                                                                                                      tCGGCGACCAGGGTGTCTGGCTGCAGGGTAGCCAGCAGGGCGGCGGACAACGGCAGCTCTGCGCGGGTGCCCATGCCGACTGGGGACGCGTTGGCCACCAGGTCGAAGTCTTCCAGCCCACTGAACTGTGTGCTGACCGTAAGCCCggg                          <  1:217138/149‑1 (MQ=255)                                                                                                                      tCGGCGACCAGGGTGTCTGGCTGCAGGGTAGCCAGCAGGGCGGCGGACAACGGCAGCTCTGCGCGGGTGCCCATGCCGACTGGGGACGCGTTGGCCACCAGGTCGAAGTCTTCCAGCCCACTGAACTGTGTGCTGACCGTAAGCCCggg                          <  6:197509/149‑1 (MQ=255)                                                                                                                        ggCGACCAGGGTGTCTGGCTGCAGGGTAGCCAGCAGGGCGGCGGACAACGGCAGCTCTGCGCGGGTGCCCATGCCGACTGGGGACGCGTTGGCCACCAGGTCGAAGTCTTCCAGCCCACTGAACTGTGTGCTGACCGTAAGCCCgggg                         >  2:191778/1‑148 (MQ=255)                                                                                                                          cGACCAGGGTGTCTGGCTGCAGGGTAGCCAGCAGGGCGGCGGACAACGGCAGCTCTGCGCGGGTGCCCATGCCGACTGGGGACGCGTTGGCCACCAGGTCGAAGTCTTCCAGCCCACTGAACTGTGTGCTGACCGTAAGCCCGGGGAAg                      <  7:185065/149‑1 (MQ=255)                                                                                                                               aGGGTGTCTGGCTGCAGGGTAGCCAGCAGGGCGGCGGACAACGGCAGCTCTGCGCGGGTGCCCATGCCGACTGGGGACGCGTTGGCCACCAGGTCGAAGTCTTCCAGCCCACTGAACTGTGTGCTGACCGTAAGCCCgggg                         >  4:65218/1‑141 (MQ=255)                                                                                                                               aGGGTGTCTGGCTGCAGGGTAGCCAGCAGGGCGGCGGACAACGGCAGCTCTGCGCGGGTGCCCATGCCGACTGGGGACGCGTTGGCCACCAGGTCGAAGTCTTCCAGCCCACTGAACTGTGTGCTGACCGTAAGCCCgggg                         <  3:65218/141‑1 (MQ=255)                                                                                                                                   tgtCTGGCTGCAGGGTAGCCAGCAGGGCGGCGGACAACGGCAGCTCTGCGCGGGTGCCCATGCCGACTGGGGACGCGTTGGCCACCAGGTCGAAGTCTTCCAGCCCACTGa                                                   >  4:46188/1‑111 (MQ=255)                                                                                                                                   tgtCTGGCTGCAGGGTAGCCAGCAGGGCGGCGGACAACGGCAGCTCTGCGCGGGTGCCCATGCCGACTGGGGACGCGTTGGCCACCAGGTCGAAGTCTTCCAGCCCACTGa                                                   <  3:46188/111‑1 (MQ=255)                                                                                                                                       tGGCTGCAGGGTAGCCAGCAGGGCGGCGGACAACGGCAGCTCTGCGCGGGTGCCCATGCCGACTGGGGACGCGTTGGCCACCAGGTCGAAGTCTTCCAGCCCACTGAACTGTGTGCTGACCGTAAGCCCGGGGAAGCCGTTGCCGAg           >  3:17646/1‑147 (MQ=255)                                                                                                                                         gCTGCAGGGTAGCCAGCAGGGCGGCGGACAACGGCAGCTCTGCGCGGGTGCCCATGCCGACTGGGGACGCGTTGGCCACCAGGTCGAAGTCTTCCAGCCCACTGAACTGTGTGCTGACCGTAAGCCCGGGGAAGCCGTTGCCGAGCa         <  6:313618/147‑1 (MQ=255)                                                                                                                                           tGCAGGGTAGCCAGCAGGGCGGCGGACAACGGCAGCTCTGCGCGGGTGccctgcagccagacaccctggtcgccgacgtggtcacctcacccgagatcaccccgctgctgaaccgcgcgcggcaagtaggttgcaggatccagactggc     <  1:83420‑M2/149‑102 (MQ=255)                                                                                                                                             cAGGGTAGCCAGCAGGGCGGCGGACAACGGCAGCTCTGCGCGGGTGCCCATGCCGACTGGGGACGCGTTGGCCACCAGGTCGAAGTCTTCCAGCCCACTGAACTGTGTGCTGACCGTAAGCCCGGGGAAGCCGTTGCCGAGCAGTTCg    >  3:214546/1‑148 (MQ=255)                                                                                                                                              aGGGTAGCCAGCAGGGCGGCGGACAACGGCAGCTCTGCGCGGGTGccctgcagccagacaccctggtcgccgacgtggtcacctcacccgagatcaccccgctgctgaaccgcgcgcggcaagtaggttgcaggatccagactggcccg  <  5:151655‑M2/149‑105 (MQ=255)                                                                                                                                                 |                                                                                                                                                  ATGAAGGCGCCAAGGTGGCCCAGTTGGGCGAAGGCCATTTCCGGGCCAGTCTGGATCCTGCAACCTACTTGCCGCGCGCGGTTCAGCAGCGGGGTGATCTCGGGTGAGGTGACCACGTCGGCGACCAGGGTGTCTGGCTGCAGGGTAGCCAGCAGGGCGGCGGACAACGGCAGCTCTGCGCGGGTGCCCATGCCGACTGGGGACGCGTTGGCCACCAGGTCGAAGTCTTCCAGCCCACTGAACTGTGTGCTGACCGTAAGCCCGGGGAAGCCGTTGCCGAGCAGTTCGCA  >  NC_002947/2982394‑2982683

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.